Wall clock time and date at job start Mon Mar 30 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.47329 * 179.97438 * 15 14 12 17 17 N 1.31130 * 126.55060 * 89.70866 * 16 15 14 18 18 C 1.34493 * 105.61466 * 179.91887 * 17 16 15 19 19 C 1.50701 * 126.28776 * 180.12796 * 18 17 16 20 20 F 1.39898 * 109.47130 * 300.23921 * 19 18 17 21 21 F 1.39899 * 109.46924 * 60.24292 * 19 18 17 22 22 N 1.29949 * 107.42359 * 0.35230 * 18 17 16 23 23 O 1.21294 * 110.25140 * 359.77842 * 22 18 17 24 24 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 25 25 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 26 26 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 27 27 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 29 29 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 30 30 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 31 31 H 1.09005 * 109.46977 * 180.23814 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6937 -0.2297 4.8812 17 7 0.5710 -0.4660 5.5162 18 6 0.5471 0.4010 6.5441 19 6 -0.5414 0.5279 7.5787 20 9 -1.7503 0.8401 6.9477 21 9 -0.6736 -0.6827 8.2673 22 7 1.6326 1.1123 6.4786 23 8 2.3049 0.7659 5.5303 24 1 -0.3633 -1.0239 -0.0882 25 1 -0.3633 0.5883 -0.8426 26 1 -0.3633 0.4355 0.9308 27 1 2.9400 -0.1044 -4.2545 28 1 1.1495 0.5389 2.5435 29 1 1.8327 -1.9681 3.6508 30 1 3.2856 -0.9399 3.6505 31 1 -0.2835 1.3197 8.2821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332143041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:46 Heat of formation + Delta-G solvation = -64.424736 kcal Electronic energy + Delta-G solvation = -20631.010525 eV Core-core repulsion = 16780.140123 eV Total energy + Delta-G solvation = -3850.870403 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.60058 -47.62142 -46.24901 -39.16146 -36.56572 -35.17666 -33.76173 -32.83519 -31.31067 -28.48021 -27.68716 -25.31471 -24.15978 -22.84921 -22.02777 -19.76993 -18.81022 -18.63097 -17.91742 -17.63731 -17.13711 -17.01750 -16.47847 -15.52757 -15.09038 -14.47350 -14.35731 -14.01122 -13.95308 -13.77569 -13.49026 -13.05160 -12.75617 -12.45389 -12.42850 -12.22375 -12.13865 -11.67495 -11.49363 -11.15551 -10.87507 -10.78624 -10.36211 -9.87557 -9.25407 -8.90701 -8.90053 -8.61089 -6.12251 -4.12438 0.42456 1.41801 2.13010 2.35629 3.08160 3.20472 3.26685 3.30284 3.38107 3.42499 3.59975 4.11730 4.27636 4.28172 4.33230 4.81499 5.08814 5.16639 5.32548 5.35018 5.81993 6.08510 6.30279 6.44696 6.53141 6.75625 7.11177 7.43511 7.45021 7.86148 8.45064 8.89782 9.03062 9.46382 11.00734 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.032219 B = 0.003723 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.856658 B = 7519.389357 C = 7673.904685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.057 0.943 4 C -0.498 4.498 5 H 0.087 0.913 6 C 0.073 3.927 7 N -0.892 5.892 8 Si 0.871 3.129 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.265 1.265 12 C 0.526 3.474 13 O -0.520 6.520 14 N -0.747 5.747 15 C 0.212 3.788 16 C 0.189 3.811 17 N -0.441 5.441 18 C 0.088 3.912 19 C 0.380 3.620 20 F -0.178 7.178 21 F -0.179 7.179 22 N -0.345 5.345 23 O 0.107 5.893 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.399 0.601 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 5.615 21.452 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.075 0.925 4 C -0.536 4.536 5 H 0.105 0.895 6 C -0.129 4.129 7 N -0.529 5.529 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.189 1.189 12 C 0.315 3.685 13 O -0.392 6.392 14 N -0.406 5.406 15 C 0.087 3.913 16 C -0.032 4.032 17 N -0.174 5.174 18 C -0.186 4.186 19 C 0.324 3.676 20 F -0.159 7.159 21 F -0.160 7.160 22 N -0.046 5.046 23 O 0.039 5.961 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.234 0.766 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.415 5.286 21.833 22.894 hybrid contribution -0.228 1.302 -0.094 1.325 sum -4.643 6.588 21.739 23.185 Atomic orbital electron populations 1.21973 0.96522 1.01627 0.99178 1.19366 0.94222 0.97040 0.91655 0.92506 1.20729 1.43354 0.96219 0.93281 0.89455 1.25027 0.94517 0.98050 0.95329 1.69877 1.45570 1.35785 1.01681 0.86970 0.79017 0.86617 0.77618 1.20012 1.21180 1.18938 1.21973 0.78770 0.84581 0.83146 1.90619 1.36588 1.25962 1.86043 1.46443 1.56515 1.33235 1.04456 1.19715 1.00776 0.95115 0.75737 1.29108 0.87556 0.88647 0.97848 1.71981 1.17655 1.22488 1.05261 1.26394 0.97797 0.94879 0.99567 1.19178 0.77489 0.85366 0.85517 1.93095 1.46196 1.92774 1.83860 1.93086 1.95820 1.47972 1.79164 1.74625 1.05209 1.19923 1.04836 1.85364 1.41272 1.40724 1.28700 0.92679 0.92520 0.95536 0.92428 0.76639 0.86657 0.87449 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.12 37.16 0.34 -2.22 16 2 C 0.00 -0.02 2.30 -92.92 -0.21 -0.24 16 3 H 0.06 1.20 5.29 -51.93 -0.27 0.92 16 4 C -0.50 -13.68 8.36 -34.44 -0.29 -13.97 16 5 H 0.09 2.73 7.61 -52.49 -0.40 2.33 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 8 Si 0.87 20.17 26.99 -169.99 -4.59 15.58 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.26 -5.63 6.82 56.52 0.39 -5.25 16 12 C 0.53 10.52 7.15 -10.99 -0.08 10.44 16 13 O -0.52 -12.30 15.77 5.55 0.09 -12.21 16 14 N -0.75 -10.86 5.41 -61.48 -0.33 -11.20 16 15 C 0.21 2.49 6.30 -5.19 -0.03 2.46 16 16 C 0.19 2.13 7.88 -13.06 -0.10 2.03 16 17 N -0.44 -5.55 11.55 -9.87 -0.11 -5.66 16 18 C 0.09 0.97 7.65 -156.37 -1.20 -0.22 16 19 C 0.38 3.22 5.86 36.01 0.21 3.43 16 20 F -0.18 -1.81 17.32 2.25 0.04 -1.77 16 21 F -0.18 -1.77 17.32 2.25 0.04 -1.73 16 22 N -0.34 -3.81 12.16 30.90 0.38 -3.43 16 23 O 0.11 1.17 11.31 18.10 0.20 1.37 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.03 0.40 7.43 -51.93 -0.39 0.02 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.40 5.04 7.82 -40.82 -0.32 4.72 16 29 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.15 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 290.07 15.07 4.37 4.37 Total: -1.00 -32.89 290.07 -3.25 -36.14 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.64 Total: 0.85 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.46 Total: 3.65 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.70 Total: -46.25 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.29 Total: -10.84 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.08 Total: -3.50 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.59 Total: 15.58 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.89 -3.25 -36.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332143041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.288 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds