Wall clock time and date at job start Mon Mar 30 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47097 * 119.99875 * 2 1 3 5 5 H 1.07998 * 120.00129 * 119.99586 * 4 2 1 6 6 C 1.37880 * 119.99861 * 300.00304 * 4 2 1 7 7 N 1.31510 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47431 * 59.99843 * 8 6 4 10 10 H 1.48503 * 109.46954 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47295 * 299.99446 * 8 6 4 12 12 C 1.50703 * 109.47292 * 239.99892 * 2 1 3 13 13 O 1.21278 * 119.99985 * 240.00503 * 12 2 1 14 14 N 1.34779 * 119.99944 * 60.00215 * 12 2 1 15 15 C 1.46499 * 119.99872 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.46992 * 179.97438 * 15 14 12 17 17 N 1.31130 * 126.54970 * 89.71130 * 16 15 14 18 18 C 1.34495 * 105.61689 * 179.91883 * 17 16 15 19 19 C 1.50697 * 126.28834 * 180.12736 * 18 17 16 20 20 F 1.39890 * 109.47319 * 300.23454 * 19 18 17 21 21 F 1.39900 * 109.47071 * 60.24066 * 19 18 17 22 22 N 1.29951 * 107.42004 * 0.34813 * 18 17 16 23 23 O 1.21293 * 110.25189 * 359.77930 * 22 18 17 24 24 H 1.08992 * 109.47461 * 300.00301 * 1 2 3 25 25 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 26 26 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 27 27 H 0.97002 * 119.99768 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99708 * 359.97438 * 14 12 2 29 29 H 1.09002 * 109.47391 * 59.99686 * 15 14 12 30 30 H 1.09001 * 109.46813 * 299.99742 * 15 14 12 31 31 H 1.09005 * 109.47009 * 180.23204 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0079 9 1 3.8063 -1.1209 4.0082 10 1 1.8268 -0.4198 5.2204 11 1 1.8257 -2.5201 4.0078 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1191 14 7 1.7069 -0.2500 -2.4546 15 6 2.1948 -0.9409 -3.6507 16 6 1.6921 -0.2308 -4.8812 17 7 2.2892 0.7489 -5.5162 18 6 1.4799 1.0606 -6.5441 19 6 1.7231 2.1290 -7.5786 20 9 1.8317 3.3729 -6.9477 21 9 2.9086 1.8502 -8.2672 22 7 0.4473 0.2742 -6.4786 23 8 0.5498 -0.4752 -5.5304 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7094 1.1618 3.4844 28 1 1.1489 0.5385 -2.5436 29 1 1.8311 -1.9685 -3.6506 30 1 3.2848 -0.9413 -3.6508 31 1 0.8907 2.1499 -8.2821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332143042.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:48 Heat of formation + Delta-G solvation = -66.760068 kcal Electronic energy + Delta-G solvation = -20563.806027 eV Core-core repulsion = 16712.834356 eV Total energy + Delta-G solvation = -3850.971670 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.55680 -47.57728 -46.19665 -39.05939 -36.51335 -35.12068 -33.82354 -32.78209 -30.60056 -28.41371 -27.52907 -25.18756 -24.09559 -22.82146 -22.03451 -19.79489 -18.75621 -18.59717 -17.88320 -17.58959 -16.98166 -16.56507 -16.27099 -15.34009 -14.91667 -14.62124 -14.42888 -14.05185 -13.90872 -13.63059 -13.23365 -13.03671 -12.80317 -12.36537 -12.33969 -12.11488 -11.62413 -11.55980 -11.05427 -10.87121 -10.74292 -10.73461 -10.32738 -10.01641 -9.05613 -8.84275 -8.79530 -8.39696 -6.07472 -4.11454 0.47799 1.47111 2.18269 2.40636 3.13378 3.34485 3.37427 3.41977 3.42484 3.51738 3.70133 4.16730 4.32152 4.33063 4.43941 4.86826 5.13738 5.26118 5.36116 5.40088 6.04283 6.53618 6.62065 6.74995 6.85205 7.38817 7.48640 7.67414 7.85003 8.02113 8.27687 8.95562 9.00040 9.54341 11.00068 Molecular weight = 275.09amu Principal moments of inertia in cm(-1) A = 0.036840 B = 0.003408 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.859818 B = 8214.405138 C = 8399.861821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.505 4.505 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.528 3.472 13 O -0.537 6.537 14 N -0.745 5.745 15 C 0.213 3.787 16 C 0.190 3.810 17 N -0.441 5.441 18 C 0.088 3.912 19 C 0.380 3.620 20 F -0.178 7.178 21 F -0.180 7.180 22 N -0.345 5.345 23 O 0.107 5.893 24 H 0.095 0.905 25 H 0.011 0.989 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.401 0.599 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 1.761 -19.018 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.074 0.926 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.318 3.682 13 O -0.411 6.411 14 N -0.404 5.404 15 C 0.087 3.913 16 C -0.031 4.031 17 N -0.174 5.174 18 C -0.186 4.186 19 C 0.325 3.675 20 F -0.159 7.159 21 F -0.161 7.161 22 N -0.046 5.046 23 O 0.040 5.960 24 H 0.113 0.887 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.236 0.764 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.887 1.531 -19.473 19.624 hybrid contribution 0.111 -0.011 0.797 0.805 sum -1.777 1.520 -18.675 18.821 Atomic orbital electron populations 1.21767 0.96327 1.00004 1.01065 1.18907 0.94282 0.97000 0.88695 0.92635 1.21083 1.31365 1.12987 0.88860 0.90685 1.24948 0.95015 0.95028 0.99162 1.69856 1.36877 1.22962 1.23792 0.86481 0.79309 0.79688 0.81521 1.20139 1.21381 1.20147 1.22144 0.78185 0.84229 0.83629 1.90564 1.37577 1.26659 1.86289 1.46376 1.56428 1.33196 1.04358 1.19696 1.00657 0.95080 0.75883 1.29101 0.82978 0.93171 0.97826 1.71979 1.28310 1.11887 1.05267 1.26390 0.90447 1.02246 0.99563 1.19175 0.86982 0.75864 0.85524 1.93096 1.96705 1.42236 1.83855 1.93084 1.50362 1.93468 1.79174 1.74620 1.21031 1.04083 1.04866 1.85360 1.37246 1.44732 1.28701 0.88691 0.96961 0.94751 0.92808 0.76420 0.87595 0.86782 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.87 37.16 0.33 -2.58 16 2 C 0.03 0.76 2.64 -92.92 -0.25 0.52 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.08 2.14 6.75 -52.49 -0.35 1.79 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.53 10.99 7.15 -10.98 -0.08 10.91 16 13 O -0.54 -12.72 15.46 5.56 0.09 -12.63 16 14 N -0.75 -11.55 5.44 -61.47 -0.33 -11.88 16 15 C 0.21 2.63 6.30 -5.19 -0.03 2.59 16 16 C 0.19 2.26 7.88 -13.06 -0.10 2.15 16 17 N -0.44 -5.83 11.55 -9.87 -0.11 -5.95 16 18 C 0.09 1.02 7.65 -156.37 -1.20 -0.18 16 19 C 0.38 3.39 5.86 36.00 0.21 3.60 16 20 F -0.18 -1.90 17.32 2.25 0.04 -1.86 16 21 F -0.18 -1.84 17.32 2.25 0.04 -1.80 16 22 N -0.34 -3.98 12.16 30.90 0.38 -3.61 16 23 O 0.11 1.23 11.31 18.11 0.20 1.43 16 24 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 25 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.40 5.64 7.88 -40.82 -0.32 5.31 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.15 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 290.04 15.07 4.37 4.37 Total: -1.00 -30.97 290.04 -3.86 -34.83 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -2.63 Total: 0.25 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.50 Total: 4.49 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.55 Total: -45.34 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.29 Total: -11.20 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.08 Total: -3.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.97 -3.86 -34.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332143042.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.928 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds