Wall clock time and date at job start Mon Mar 30 2020 01:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46963 * 2 1 4 4 N 1.46502 * 109.47412 * 119.99944 * 2 1 3 5 5 C 1.38820 * 120.00010 * 275.00320 * 4 2 1 6 6 C 1.39803 * 119.58295 * 359.97438 * 5 4 2 7 7 C 1.38598 * 119.48881 * 179.97438 * 6 5 4 8 8 C 1.38393 * 118.67941 * 0.25920 * 7 6 5 9 9 C 1.40547 * 119.14706 * 359.47912 * 8 7 6 10 10 C 1.41324 * 119.78258 * 180.25227 * 9 8 7 11 11 H 1.08001 * 119.99729 * 0.27110 * 10 9 8 12 12 C 1.40017 * 120.00293 * 180.27361 * 10 9 8 13 13 N 1.30750 * 120.00116 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47382 * 89.99712 * 14 12 10 16 16 H 1.48501 * 109.47313 * 210.00151 * 14 12 10 17 17 H 1.48508 * 109.47126 * 329.99826 * 14 12 10 18 18 N 1.31950 * 119.58604 * 179.97438 * 5 4 2 19 19 C 1.50704 * 109.47192 * 240.00081 * 2 1 3 20 20 C 1.33642 * 126.03553 * 99.71718 * 19 2 1 21 21 N 1.31783 * 114.49719 * 179.79300 * 20 19 2 22 22 C 1.29023 * 117.12218 * 0.51069 * 21 20 19 23 23 S 1.70973 * 110.17247 * 359.72166 * 22 21 20 24 24 H 1.08999 * 109.47341 * 299.99536 * 1 2 3 25 25 H 1.09003 * 109.47028 * 60.00398 * 1 2 3 26 26 H 1.09003 * 109.46543 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99993 * 95.00263 * 4 2 1 28 28 H 1.08000 * 120.25538 * 0.02562 * 6 5 4 29 29 H 1.08002 * 120.65587 * 179.97438 * 7 6 5 30 30 H 1.07994 * 120.42073 * 179.74187 * 8 7 6 31 31 H 0.96995 * 120.00538 * 180.02562 * 13 12 10 32 32 H 1.07994 * 122.74929 * 359.96862 * 20 19 2 33 33 H 1.08006 * 124.91761 * 179.75877 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1510 0.0019 2.3920 6 6 1.8164 1.3583 2.4448 7 6 1.9490 2.0477 3.6398 8 6 2.4172 1.3676 4.7505 9 6 2.7316 0.0026 4.6351 10 6 3.2057 -0.7062 5.7620 11 1 3.3211 -0.2000 6.7090 12 6 3.5257 -2.0648 5.6509 13 7 3.3856 -2.6778 4.5045 14 14 4.1530 -3.0015 7.1403 15 1 3.0042 -3.5875 7.8764 16 1 5.0618 -4.0883 6.6949 17 1 4.8919 -2.0735 8.0336 18 7 2.5911 -0.6283 3.4644 19 6 2.0324 -0.7104 -1.2305 20 6 2.4664 -0.1281 -2.3524 21 7 2.8589 -0.9691 -3.2880 22 6 2.7706 -2.2284 -3.0215 23 16 2.1441 -2.4555 -1.4470 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 2.2491 -1.6317 1.1526 28 1 1.4566 1.8648 1.5614 29 1 1.6963 3.0959 3.7018 30 1 2.5353 1.8782 5.6947 31 1 3.6069 -3.6190 4.4275 32 1 2.4959 0.9438 -2.4805 33 1 3.0522 -3.0242 -3.6954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334332675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:41 Heat of formation + Delta-G solvation = 68.097134 kcal Electronic energy + Delta-G solvation = -18145.862846 eV Core-core repulsion = 15297.721424 eV Total energy + Delta-G solvation = -2848.141422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.74930 -40.10347 -37.55552 -35.30593 -33.16189 -32.08917 -30.35526 -29.49984 -27.34716 -26.40829 -23.86091 -23.42230 -21.95710 -21.11724 -19.47469 -18.82198 -18.18528 -16.79869 -16.64059 -16.10799 -16.00047 -15.53387 -15.30364 -14.85997 -14.69746 -14.66638 -14.20138 -13.74735 -13.62843 -13.01609 -12.87545 -12.71881 -12.62198 -12.52852 -12.34430 -12.01812 -11.71350 -11.33882 -10.77016 -10.63812 -10.26961 -9.93772 -9.82904 -9.44156 -8.35236 -8.22343 -6.46912 -0.28226 0.36370 0.79736 1.06586 1.35732 1.41888 1.54624 1.58956 1.81627 2.25414 2.58570 2.93135 3.40346 3.68847 4.03287 4.19091 4.25913 4.38287 4.42160 4.55542 4.66177 4.82783 4.91909 4.98403 5.02061 5.12914 5.17119 5.26990 5.36754 5.72087 5.97468 6.06972 6.22138 6.53113 6.67784 6.80483 6.90716 7.19316 8.34256 8.51630 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.005079 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.140830 B = 5511.410271 C = 6540.622504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.238 3.762 3 H 0.099 0.901 4 N -0.730 5.730 5 C 0.397 3.603 6 C -0.363 4.363 7 C -0.029 4.029 8 C -0.343 4.343 9 C 0.259 3.741 10 C -0.472 4.472 11 H 0.086 0.914 12 C 0.027 3.973 13 N -0.752 5.752 14 Si 0.984 3.016 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.257 1.257 18 N -0.565 5.565 19 C -0.233 4.233 20 C 0.036 3.964 21 N -0.495 5.495 22 C 0.021 3.979 23 S 0.137 5.863 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.389 0.611 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.101 0.899 31 H 0.276 0.724 32 H 0.193 0.807 33 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 -0.645 -11.898 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.131 3.869 3 H 0.117 0.883 4 N -0.366 5.366 5 C 0.157 3.843 6 C -0.389 4.389 7 C -0.053 4.053 8 C -0.366 4.366 9 C 0.133 3.867 10 C -0.504 4.504 11 H 0.104 0.896 12 C -0.195 4.195 13 N -0.374 5.374 14 Si 0.805 3.195 15 H -0.188 1.188 16 H -0.194 1.194 17 H -0.181 1.181 18 N -0.288 5.288 19 C -0.355 4.355 20 C -0.116 4.116 21 N -0.209 5.209 22 C -0.276 4.276 23 S 0.389 5.611 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.223 0.777 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.209 0.791 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.026 -2.289 -12.128 12.708 hybrid contribution 0.217 0.986 0.617 1.184 sum -2.808 -1.303 -11.511 11.920 Atomic orbital electron populations 1.22250 0.93663 1.02441 1.03009 1.19122 0.94126 0.95376 0.78319 0.88308 1.44476 1.74016 1.11818 1.06253 1.18881 0.89617 0.88675 0.87126 1.20982 1.23676 0.94470 0.99729 1.21023 0.93552 0.98682 0.92073 1.21693 1.18791 0.96566 0.99562 1.18652 0.88123 0.89525 0.90449 1.19938 1.38843 0.95411 0.96208 0.89628 1.26926 0.94100 0.98603 0.99826 1.70242 1.30702 1.10432 1.26010 0.85187 0.78773 0.77849 0.77719 1.18820 1.19355 1.18102 1.68152 1.24766 1.37395 0.98454 1.26187 1.10863 0.96787 1.01666 1.22003 0.99424 1.02048 0.88101 1.66402 1.18876 1.02484 1.33090 1.29004 1.02184 0.97423 0.98982 1.84308 1.58319 1.04507 1.13939 0.92358 0.89328 0.92911 0.77692 0.85818 0.85183 0.88068 0.91372 0.79052 0.75152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.38 71.98 0.68 -3.35 16 2 C 0.24 7.03 2.71 44.25 0.12 7.15 16 3 H 0.10 2.85 6.43 -2.38 -0.02 2.83 16 4 N -0.73 -28.79 5.23 -328.00 -1.71 -30.50 16 5 C 0.40 19.13 7.63 133.42 1.02 20.15 16 6 C -0.36 -15.79 8.84 22.73 0.20 -15.59 16 7 C -0.03 -1.29 10.15 22.39 0.23 -1.06 16 8 C -0.34 -17.44 9.83 22.87 0.22 -17.22 16 9 C 0.26 14.80 6.55 40.18 0.26 15.07 16 10 C -0.47 -26.32 9.14 23.46 0.21 -26.10 16 11 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 12 C 0.03 1.41 5.50 85.29 0.47 1.88 16 13 N -0.75 -40.82 11.46 21.84 0.25 -40.57 16 14 Si 0.98 38.79 29.56 68.60 2.03 40.82 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 16 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 17 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 18 N -0.57 -31.81 7.89 -186.59 -1.47 -33.28 16 19 C -0.23 -6.13 5.51 24.64 0.14 -5.99 16 20 C 0.04 0.87 11.24 83.66 0.94 1.81 16 21 N -0.50 -12.26 10.54 -203.75 -2.15 -14.41 16 22 C 0.02 0.43 12.23 130.66 1.60 2.03 16 23 S 0.14 3.22 22.29 -56.49 -1.26 1.97 16 24 H 0.06 1.69 7.65 -2.39 -0.02 1.68 16 25 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.39 15.94 7.87 -92.71 -0.73 15.21 16 28 H 0.12 4.49 6.04 -2.91 -0.02 4.47 16 29 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.28 13.53 8.29 -92.71 -0.77 12.76 16 32 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.23 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -66.63 299.63 2.19 -64.45 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.42 Total: 32.76 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 6.09 Total: -21.23 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -5.08 Total: -118.76 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.26 Total: 1.97 kcal Total: -66.63 2.19 -64.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334332675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.543 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds