Wall clock time and date at job start Mon Mar 30 2020 01:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46529 * 2 1 4 4 N 1.46502 * 109.46859 * 240.00993 * 2 1 3 5 5 C 1.38821 * 120.00153 * 84.72564 * 4 2 1 6 6 C 1.39787 * 119.58728 * 0.26717 * 5 4 2 7 7 C 1.38594 * 119.49447 * 179.97438 * 6 5 4 8 8 C 1.38389 * 118.68137 * 0.02562 * 7 6 5 9 9 C 1.40555 * 119.14744 * 359.97438 * 8 7 6 10 10 C 1.41318 * 119.78834 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99473 * 353.78340 * 10 9 8 12 12 C 1.40021 * 120.00202 * 173.77960 * 10 9 8 13 13 N 1.30739 * 120.00272 * 6.34752 * 12 10 9 14 14 Si 1.86804 * 119.99979 * 186.35174 * 12 10 9 15 15 H 1.48493 * 109.47383 * 94.98247 * 14 12 10 16 16 H 1.48496 * 109.47041 * 214.98400 * 14 12 10 17 17 H 1.48500 * 109.46800 * 334.98368 * 14 12 10 18 18 N 1.31960 * 119.58223 * 180.02562 * 5 4 2 19 19 C 1.50693 * 109.47131 * 120.00435 * 2 1 3 20 20 C 1.33636 * 126.04156 * 260.00077 * 19 2 1 21 21 N 1.31783 * 114.50556 * 180.02562 * 20 19 2 22 22 C 1.29023 * 117.11960 * 359.97438 * 21 20 19 23 23 S 1.70979 * 110.16931 * 359.72966 * 22 21 20 24 24 H 1.08998 * 109.46850 * 59.99547 * 1 2 3 25 25 H 1.09000 * 109.46399 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46695 * 299.99273 * 1 2 3 27 27 H 0.97005 * 119.99272 * 264.99342 * 4 2 1 28 28 H 1.08002 * 120.25814 * 359.96145 * 6 5 4 29 29 H 1.08003 * 120.66214 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.42803 * 179.97438 * 8 7 6 31 31 H 0.96998 * 120.00330 * 180.02562 * 13 12 10 32 32 H 1.08009 * 122.74460 * 359.97438 * 20 19 2 33 33 H 1.08006 * 124.91324 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1963 5 6 2.1455 0.0009 -2.3934 6 6 1.8105 1.3570 -2.4463 7 6 1.9387 2.0454 -3.6423 8 6 2.3974 1.3631 -4.7555 9 6 2.7180 -0.0004 -4.6387 10 6 3.1882 -0.7101 -5.7667 11 1 3.2052 -0.2338 -6.7357 12 6 3.6319 -2.0309 -5.6279 13 7 3.4967 -2.6492 -4.4839 14 14 4.4172 -2.9096 -7.0773 15 1 5.8940 -2.7788 -6.9944 16 1 4.0450 -4.3468 -7.0455 17 1 3.9367 -2.3017 -8.3441 18 7 2.5857 -0.6293 -3.4660 19 6 2.0324 -0.7105 1.2303 20 6 2.4714 -0.1284 2.3503 21 7 2.8591 -0.9695 3.2877 22 6 2.7712 -2.2288 3.0210 23 16 2.1373 -2.4556 1.4493 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 2.2491 -1.6316 -1.1528 28 1 1.4543 1.8644 -1.5619 29 1 1.6857 3.0935 -3.7044 30 1 2.5077 1.8718 -5.7018 31 1 3.8044 -3.5640 -4.3876 32 1 2.5063 0.9438 2.4764 33 1 3.0524 -3.0245 3.6950 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334332680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:45 Heat of formation + Delta-G solvation = 86.104688 kcal Electronic energy + Delta-G solvation = -18144.094541 eV Core-core repulsion = 15296.733985 eV Total energy + Delta-G solvation = -2847.360556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68648 -38.38708 -36.07034 -33.47270 -31.62312 -30.28634 -29.01632 -28.01663 -25.62122 -25.23947 -22.50844 -21.62255 -20.31637 -20.05774 -18.07201 -17.24786 -16.67544 -15.29259 -15.07311 -14.62077 -14.57677 -14.26524 -13.93812 -13.61893 -13.30025 -13.15283 -12.69985 -12.14361 -11.94735 -11.84976 -11.51770 -11.26903 -11.06996 -10.99261 -10.62499 -10.41812 -9.94226 -9.69417 -9.55048 -9.25784 -9.02170 -8.87617 -7.95050 -7.53909 -6.59866 -6.36011 -4.49188 0.70066 1.34584 1.77005 2.81160 2.85612 3.10625 3.14043 3.20849 3.27691 3.97273 4.05276 4.33465 4.77662 4.82443 5.20583 5.34194 5.43164 5.59380 5.85063 6.00306 6.04254 6.11506 6.13847 6.37161 6.56814 6.80688 6.86426 6.90034 7.22301 7.55341 7.65659 7.76800 7.88024 8.12668 8.30952 8.59911 8.77568 9.07720 10.21197 10.37606 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.005089 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.776760 B = 5500.537680 C = 6536.553068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.238 3.762 3 H 0.097 0.903 4 N -0.733 5.733 5 C 0.413 3.587 6 C -0.368 4.368 7 C -0.031 4.031 8 C -0.315 4.315 9 C 0.292 3.708 10 C -0.434 4.434 11 H 0.084 0.916 12 C 0.072 3.928 13 N -0.715 5.715 14 Si 0.905 3.095 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.262 1.262 18 N -0.531 5.531 19 C -0.210 4.210 20 C 0.030 3.970 21 N -0.471 5.471 22 C 0.002 3.998 23 S 0.144 5.856 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.394 0.606 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.270 0.730 32 H 0.176 0.824 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 -0.681 10.695 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.128 3.872 3 H 0.115 0.885 4 N -0.371 5.371 5 C 0.173 3.827 6 C -0.394 4.394 7 C -0.056 4.056 8 C -0.338 4.338 9 C 0.166 3.834 10 C -0.466 4.466 11 H 0.102 0.898 12 C -0.153 4.153 13 N -0.337 5.337 14 Si 0.729 3.271 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.185 1.185 18 N -0.252 5.252 19 C -0.332 4.332 20 C -0.121 4.121 21 N -0.184 5.184 22 C -0.295 4.295 23 S 0.396 5.604 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.193 0.807 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.864 -2.342 10.888 11.499 hybrid contribution 0.333 1.002 -0.407 1.132 sum -2.531 -1.340 10.480 10.865 Atomic orbital electron populations 1.22338 0.94951 1.02485 1.02428 1.18990 0.93247 0.95542 0.79389 0.88531 1.44287 1.74662 1.12077 1.06054 1.18447 0.90076 0.87569 0.86588 1.20608 1.25216 0.94966 0.98601 1.20597 0.95113 0.96986 0.92856 1.21546 1.17248 0.96887 0.98093 1.18196 0.87225 0.88183 0.89821 1.19595 1.35773 0.96553 0.94694 0.89829 1.26044 0.95024 0.97751 0.96519 1.70144 1.29825 1.10216 1.23514 0.86362 0.79900 0.78751 0.82064 1.19571 1.20224 1.18542 1.68194 1.23279 1.36063 0.97645 1.26394 1.08777 0.96100 1.01942 1.21703 1.00804 1.01091 0.88531 1.66321 1.17698 1.01720 1.32670 1.28362 1.04552 0.97153 0.99443 1.84229 1.57820 1.05120 1.13244 0.90821 0.92496 0.92206 0.77066 0.89011 0.88877 0.88673 0.91911 0.80735 0.78655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.38 37.16 0.35 -1.90 16 2 C 0.24 3.66 2.71 -69.08 -0.19 3.47 16 3 H 0.10 1.49 6.43 -51.93 -0.33 1.15 16 4 N -0.73 -14.47 5.23 -55.03 -0.29 -14.75 16 5 C 0.41 9.86 7.62 -155.33 -1.18 8.68 16 6 C -0.37 -8.20 8.83 -38.87 -0.34 -8.55 16 7 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 8 C -0.31 -7.87 9.83 -38.65 -0.38 -8.25 16 9 C 0.29 8.08 6.54 -85.00 -0.56 7.52 16 10 C -0.43 -11.70 9.13 -37.74 -0.34 -12.04 16 11 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 12 C 0.07 1.83 5.49 -17.35 -0.10 1.73 16 13 N -0.72 -18.90 11.48 55.55 0.64 -18.26 16 14 Si 0.90 18.65 29.56 -169.99 -5.03 13.62 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 18 N -0.53 -14.51 7.91 -10.33 -0.08 -14.59 16 19 C -0.21 -2.92 5.51 -35.92 -0.20 -3.12 16 20 C 0.03 0.40 11.24 -19.19 -0.22 0.18 16 21 N -0.47 -6.39 10.54 -15.75 -0.17 -6.55 16 22 C 0.00 0.03 12.23 51.58 0.63 0.66 16 23 S 0.14 1.79 22.30 -107.50 -2.40 -0.61 16 24 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.39 7.94 7.88 -40.82 -0.32 7.62 16 28 H 0.09 1.78 6.04 -52.49 -0.32 1.46 16 29 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 31 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 32 H 0.18 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.20 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 299.66 15.07 4.52 4.52 Total: -1.00 -30.15 299.66 -9.18 -39.34 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -3.45 Total: 10.01 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.93 Total: -12.72 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.10 Total: -54.16 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.40 Total: -0.61 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.15 -9.18 -39.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334332680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.440 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds