Wall clock time and date at job start Mon Mar 30 2020 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47181 * 257.51238 * 3 2 1 5 5 C 1.36871 * 119.99845 * 264.07953 * 4 3 2 6 6 H 1.08005 * 119.99961 * 198.10528 * 5 4 3 7 7 C 1.39030 * 120.00301 * 18.10760 * 5 4 3 8 8 N 1.31379 * 119.99922 * 21.06976 * 7 5 4 9 9 Si 1.86795 * 120.00032 * 201.06812 * 7 5 4 10 10 H 1.48495 * 109.47412 * 59.99760 * 9 7 5 11 11 H 1.48500 * 109.47363 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47048 * 299.99791 * 9 7 5 13 13 C 1.34781 * 119.99644 * 84.07721 * 4 3 2 14 14 O 1.21679 * 120.00262 * 359.97438 * 13 4 3 15 15 C 1.46983 * 119.99355 * 180.02562 * 13 4 3 16 16 C 1.39388 * 120.71074 * 269.99699 * 15 13 4 17 17 C 1.50699 * 120.65319 * 0.02562 * 16 15 13 18 18 C 1.39819 * 118.70065 * 180.02562 * 16 15 13 19 19 C 1.35386 * 120.09695 * 0.02562 * 18 16 15 20 20 C 1.50706 * 119.24258 * 179.97438 * 19 18 16 21 21 O 1.33836 * 121.51297 * 359.97438 * 19 18 16 22 22 C 1.34389 * 121.33514 * 359.97438 * 21 19 18 23 23 O 1.21776 * 120.11188 * 179.97438 * 22 21 19 24 24 H 4.40646 * 5.51418 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47121 * 137.51136 * 3 2 1 26 26 H 1.08997 * 109.46624 * 17.50890 * 3 2 1 27 27 H 0.96995 * 119.99920 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46789 * 270.02279 * 17 16 15 29 29 H 1.09002 * 109.47070 * 30.01251 * 17 16 15 30 30 H 1.08999 * 109.47674 * 150.02063 * 17 16 15 31 31 H 1.07993 * 119.95102 * 179.72209 * 18 16 15 32 32 H 1.08994 * 109.47383 * 89.99626 * 20 19 18 33 33 H 1.08995 * 109.47005 * 210.00211 * 20 19 18 34 34 H 1.09000 * 109.46935 * 329.99651 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.2995 1.3485 5 6 3.4771 1.5815 1.6837 6 1 4.0985 1.7660 2.5476 7 6 3.0254 2.6463 0.9122 8 7 1.9717 2.4986 0.1416 9 14 3.9167 4.2868 0.9714 10 1 5.3246 4.1012 0.5373 11 1 3.2416 5.2499 0.0648 12 1 3.8920 4.8138 2.3595 13 6 3.2458 -0.6879 2.2590 14 8 2.9405 -1.8275 1.9612 15 6 3.7351 -0.3879 3.6122 16 6 5.0962 -0.4485 3.9067 17 6 6.0964 -0.8225 2.8434 18 6 5.5153 -0.1553 5.2080 19 6 4.6070 0.1789 6.1547 20 6 5.0800 0.4906 7.5512 21 8 3.2988 0.2390 5.8788 22 6 2.8310 -0.0301 4.6480 23 8 1.6360 0.0309 4.4217 24 1 -1.0500 0.0002 -0.0001 25 1 3.0091 0.7586 -0.6941 26 1 3.0098 -0.9792 -0.3092 27 1 1.6567 3.2413 -0.3969 28 1 6.2380 -1.9033 2.8420 29 1 5.7272 -0.5032 1.8688 30 1 7.0475 -0.3318 3.0504 31 1 6.5645 -0.2004 5.4595 32 1 5.2932 1.5563 7.6333 33 1 4.3038 0.2192 8.2667 34 1 5.9850 -0.0784 7.7638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340729694.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:21 Heat of formation + Delta-G solvation = -31.280493 kcal Electronic energy + Delta-G solvation = -21561.969518 eV Core-core repulsion = 18234.473136 eV Total energy + Delta-G solvation = -3327.496382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.03160 -40.57726 -38.95723 -37.19036 -36.67186 -33.89685 -33.67591 -33.13473 -30.15643 -28.96199 -28.01122 -26.58481 -25.07917 -22.93265 -21.82355 -20.16061 -19.34753 -19.05436 -18.21525 -17.77208 -17.53178 -16.97032 -16.34346 -16.02861 -15.69793 -14.96334 -14.80924 -14.64864 -14.37423 -14.25229 -14.04776 -13.90621 -13.60750 -13.46377 -13.22168 -13.17132 -12.79575 -12.65868 -12.60338 -12.20358 -11.43329 -11.33911 -11.25463 -11.23789 -10.68246 -10.56736 -9.92703 -9.21845 -8.31361 -5.95581 -0.63240 0.60907 1.15463 1.40943 1.43694 1.54684 1.78041 2.02982 2.20023 2.28948 2.36389 3.01527 3.09332 3.33761 3.41430 3.85322 3.90252 4.05318 4.24188 4.47603 4.52552 4.67858 4.70498 4.73152 4.80523 4.87800 4.95786 5.16466 5.20760 5.32052 5.35228 5.39891 5.68859 6.13453 6.31353 6.45530 7.02756 7.07931 7.42814 7.84824 8.68315 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.007996 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.135438 B = 3500.894780 C = 4123.070575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.148 4.148 3 C 0.243 3.757 4 N -0.428 5.428 5 C -0.358 4.358 6 H 0.099 0.901 7 C -0.005 4.005 8 N -0.875 5.875 9 Si 0.990 3.010 10 H -0.251 1.251 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.518 3.482 14 O -0.635 6.635 15 C -0.297 4.297 16 C 0.076 3.924 17 C -0.126 4.126 18 C -0.243 4.243 19 C 0.137 3.863 20 C -0.105 4.105 21 O -0.270 6.270 22 C 0.506 3.494 23 O -0.531 6.531 24 H 0.233 0.767 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.272 0.728 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.125 0.875 31 H 0.214 0.786 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.562 0.152 10.918 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.149 4.149 3 C 0.121 3.879 4 N -0.143 5.143 5 C -0.485 4.485 6 H 0.117 0.883 7 C -0.209 4.209 8 N -0.511 5.511 9 Si 0.812 3.188 10 H -0.175 1.175 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.308 3.692 14 O -0.524 6.524 15 C -0.301 4.301 16 C 0.074 3.926 17 C -0.182 4.182 18 C -0.261 4.261 19 C 0.090 3.910 20 C -0.160 4.160 21 O -0.179 6.179 22 C 0.361 3.639 23 O -0.425 6.425 24 H 0.249 0.751 25 H 0.123 0.877 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.231 0.769 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.615 -0.168 10.628 17.273 hybrid contribution -0.930 0.758 -0.596 1.339 sum 12.685 0.590 10.033 16.184 Atomic orbital electron populations 1.25119 0.96483 1.05631 1.00596 1.23599 0.95402 0.96112 0.99784 1.18085 0.84383 0.99685 0.85755 1.43783 1.53977 1.07636 1.08920 1.19689 1.31813 0.81455 1.15554 0.88308 1.26269 0.95132 1.03065 0.96455 1.70248 1.19787 1.34018 1.27050 0.85055 0.79118 0.76305 0.78277 1.17545 1.20881 1.19728 1.17541 0.82612 0.84740 0.84335 1.90590 1.57676 1.23235 1.80887 1.20874 0.95676 1.18296 0.95284 1.21256 0.91320 0.83266 0.96761 1.21115 0.98002 1.03616 0.95437 1.21403 1.03595 1.10681 0.90398 1.23805 0.77990 0.89359 0.99869 1.21305 1.03932 1.05854 0.84948 1.83355 1.27872 1.71875 1.34841 1.19097 0.88349 0.76602 0.79839 1.90938 1.18045 1.54431 1.79092 0.75052 0.87734 0.91098 0.91837 0.88183 0.92790 0.85672 0.76909 0.86571 0.89193 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -13.31 19.25 74.32 1.43 -11.88 16 2 C -0.15 -8.21 11.51 31.13 0.36 -7.85 16 3 C 0.24 12.99 5.06 84.58 0.43 13.42 16 4 N -0.43 -23.62 2.59 -649.62 -1.69 -25.31 16 5 C -0.36 -19.15 9.13 84.10 0.77 -18.38 16 6 H 0.10 5.04 6.75 -2.91 -0.02 5.02 16 7 C -0.01 -0.27 4.87 84.95 0.41 0.14 16 8 N -0.88 -48.11 9.47 21.68 0.21 -47.90 16 9 Si 0.99 39.86 29.60 68.60 2.03 41.89 16 10 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 11 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 13 C 0.52 28.62 5.17 86.53 0.45 29.07 16 14 O -0.63 -38.51 16.79 -4.28 -0.07 -38.59 16 15 C -0.30 -13.81 3.90 -19.76 -0.08 -13.89 16 16 C 0.08 2.46 5.83 -19.20 -0.11 2.34 16 17 C -0.13 -3.34 9.68 71.24 0.69 -2.65 16 18 C -0.24 -5.14 9.28 21.99 0.20 -4.94 16 19 C 0.14 3.16 6.95 25.03 0.17 3.33 16 20 C -0.11 -0.99 10.18 71.24 0.73 -0.27 16 21 O -0.27 -9.90 9.79 24.65 0.24 -9.66 16 22 C 0.51 24.73 7.98 68.77 0.55 25.28 16 23 O -0.53 -31.71 17.43 18.96 0.33 -31.38 16 24 H 0.23 9.59 7.80 -4.42 -0.03 9.56 16 25 H 0.10 5.46 6.47 -2.39 -0.02 5.44 16 26 H 0.07 3.61 7.61 -2.39 -0.02 3.59 16 27 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.05 1.84 7.17 -2.39 -0.02 1.82 16 30 H 0.12 2.08 8.10 -2.39 -0.02 2.06 16 31 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.14 0.26 8.06 -2.39 -0.02 0.24 16 Total: -1.00 -87.74 308.53 8.17 -79.56 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 1.13 Total: 17.66 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 6.00 Total: 13.72 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.48 Total: -73.21 kcal Atomic # 8 Polarization: -80.13 SS G_CDS: 0.50 Total: -79.63 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -87.74 8.17 -79.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340729694.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.280 kcal (2) G-P(sol) polarization free energy of solvation -87.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds