Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99759 * 2 1 4 4 H 1.48496 * 109.46887 * 239.99551 * 3 2 1 5 5 H 1.48492 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46809 * 120.00317 * 3 2 1 7 7 C 1.37879 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47015 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.46953 * 180.02562 * 10 9 7 12 12 O 1.42103 * 110.54495 * 68.37343 * 11 10 9 13 13 O 1.42102 * 110.54292 * 291.62390 * 11 10 9 14 14 N 1.65604 * 104.44888 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00177 * 64.99790 * 14 11 10 16 16 H 1.08999 * 115.57731 * 0.76808 * 15 14 11 17 17 C 1.53119 * 117.51115 * 146.53863 * 15 14 11 18 18 C 1.52462 * 59.85873 * 107.44911 * 17 15 14 19 19 C 1.53256 * 128.58268 * 242.40327 * 18 17 15 20 20 C 1.53889 * 86.98099 * 245.00445 * 19 18 17 21 21 O 1.42898 * 113.59010 * 89.64825 * 20 19 18 22 22 C 1.53249 * 128.58891 * 117.59670 * 18 17 15 23 23 H 0.96994 * 119.99975 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47133 * 59.99904 * 9 7 2 25 25 H 1.09000 * 109.46690 * 299.99750 * 9 7 2 26 26 H 1.08997 * 109.47254 * 59.99972 * 10 9 7 27 27 H 1.09000 * 109.47182 * 299.99442 * 10 9 7 28 28 H 0.97004 * 119.99372 * 244.99703 * 14 11 10 29 29 H 1.09000 * 117.51851 * 359.97438 * 17 15 14 30 30 H 1.09006 * 117.51366 * 214.89080 * 17 15 14 31 31 H 1.09002 * 113.64750 * 359.54743 * 19 18 17 32 32 H 1.08999 * 113.64710 * 130.46206 * 19 18 17 33 33 H 1.08993 * 113.59137 * 220.47432 * 20 19 18 34 34 H 0.96699 * 114.00503 * 180.02562 * 21 20 19 35 35 H 1.09004 * 113.64908 * 229.44493 * 22 18 17 36 36 H 1.09004 * 113.64569 * 0.36484 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 16 1.3383 -5.2330 0.0011 12 8 0.6656 -5.4199 -1.2366 13 8 0.6629 -5.4195 1.2373 14 7 2.5204 -6.3927 0.0033 15 6 3.4171 -6.5225 1.1545 16 1 3.2339 -5.8280 1.9743 17 6 3.9078 -7.9277 1.5139 18 6 4.8626 -6.9222 0.8798 19 6 5.5900 -7.0125 -0.4661 20 6 6.9013 -7.0575 0.3379 21 8 7.3104 -8.3804 0.6912 22 6 6.1471 -6.3242 1.4637 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8712 -3.6040 0.8922 27 1 2.8726 -3.6048 -0.8877 28 1 2.6191 -6.9861 -0.7578 29 1 3.5631 -8.7554 0.8941 30 1 4.0475 -8.1574 2.5703 31 1 5.3818 -7.9310 -1.0149 32 1 5.4846 -6.1186 -1.0809 33 1 7.7050 -6.4694 -0.1050 34 1 8.1338 -8.4156 1.1970 35 1 6.1980 -5.2381 1.3868 36 1 6.3847 -6.6898 2.4627 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345370623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = -80.050882 kcal Electronic energy + Delta-G solvation = -19414.398374 eV Core-core repulsion = 16220.231101 eV Total energy + Delta-G solvation = -3194.167273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04934 -36.78006 -36.48109 -35.44045 -33.90622 -33.85760 -31.16946 -30.94797 -26.02441 -25.60155 -22.80252 -22.10149 -21.66941 -19.02082 -18.92505 -17.68176 -17.31835 -16.52578 -16.31218 -15.39466 -15.26008 -14.93232 -14.59733 -14.54988 -13.66710 -13.48635 -13.33916 -12.80892 -12.54495 -12.15639 -11.99790 -11.75238 -11.69641 -11.57473 -11.50145 -11.19150 -11.07735 -10.97580 -10.74469 -10.42924 -10.38473 -10.16344 -10.00581 -9.72278 -9.24734 -8.73306 -8.50895 -6.13123 -4.18892 0.77369 3.05184 3.26055 3.31130 3.32695 3.60681 3.86596 4.20163 4.28224 4.36553 4.43624 4.49676 4.58102 4.79343 4.86870 5.02742 5.14933 5.21981 5.50977 5.55462 5.59459 5.66348 5.68182 5.73835 5.86332 5.90136 6.06034 6.21035 6.47893 7.06500 7.29339 7.35622 7.37047 7.79406 8.16589 8.84219 9.45786 10.97901 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.004765 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.340480 B = 5875.230913 C = 6916.691964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.587 4.587 11 S 2.593 3.407 12 O -0.967 6.967 13 O -0.964 6.964 14 N -1.095 6.095 15 C 0.105 3.895 16 H 0.137 0.863 17 C -0.147 4.147 18 C -0.164 4.164 19 C -0.093 4.093 20 C 0.082 3.918 21 O -0.550 6.550 22 C -0.131 4.131 23 H 0.266 0.734 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.412 0.588 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.378 0.622 35 H 0.096 0.904 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.285 -14.276 2.020 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.720 4.720 11 S 2.691 3.309 12 O -0.957 6.957 13 O -0.954 6.954 14 N -0.848 5.848 15 C -0.004 4.004 16 H 0.154 0.846 17 C -0.186 4.186 18 C -0.167 4.167 19 C -0.130 4.130 20 C 0.023 3.977 21 O -0.355 6.355 22 C -0.168 4.168 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.245 0.755 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.225 0.775 35 H 0.115 0.885 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.565 -14.397 1.841 19.198 hybrid contribution 1.611 1.116 -0.007 1.960 sum 14.176 -13.281 1.834 19.512 Atomic orbital electron populations 1.69945 1.06116 1.27321 1.49450 1.25067 0.94965 0.99516 0.94901 0.86527 0.79492 0.82565 0.78665 1.20107 1.21067 1.20098 1.20956 0.92993 0.89772 1.52297 0.92117 1.18968 0.92713 0.90567 0.98914 1.30445 1.13611 1.17897 1.10086 1.05588 0.74581 0.76578 0.74157 1.93558 1.71556 1.85364 1.45224 1.93551 1.71269 1.84921 1.45695 1.55392 1.51589 1.51650 1.26122 1.21282 0.89169 0.99618 0.90322 0.84565 1.23221 1.00569 0.93327 1.01510 1.22652 0.90854 1.04646 0.98534 1.22527 0.92738 1.02997 0.94754 1.22633 0.95495 0.83621 0.95987 1.86481 1.45726 1.26630 1.76628 1.23242 0.93923 1.00583 0.99089 0.92460 0.94831 0.94810 0.86313 0.86108 0.75468 0.88264 0.87915 0.90579 0.88045 0.91251 0.77473 0.88535 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.98 6.01 37.16 0.22 -10.76 16 11 S 2.59 46.04 5.44 -107.50 -0.58 45.45 16 12 O -0.97 -20.05 18.08 -57.54 -1.04 -21.09 16 13 O -0.96 -20.06 17.80 -57.54 -1.02 -21.09 16 14 N -1.10 -14.40 5.91 -5.08 -0.03 -14.43 16 15 C 0.10 1.24 6.35 -68.15 -0.43 0.81 16 16 H 0.14 1.58 8.10 -51.93 -0.42 1.16 16 17 C -0.15 -1.53 10.46 -26.94 -0.28 -1.81 16 18 C -0.16 -1.66 2.96 -154.80 -0.46 -2.12 16 19 C -0.09 -0.87 7.90 -26.14 -0.21 -1.08 16 20 C 0.08 0.68 5.28 -25.70 -0.14 0.54 16 21 O -0.55 -4.74 13.60 -35.23 -0.48 -5.22 16 22 C -0.13 -1.12 7.93 -26.04 -0.21 -1.32 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 27 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 28 H 0.41 4.68 8.92 -34.47 -0.31 4.38 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.38 1.59 9.12 45.56 0.42 2.00 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 323.16 15.07 4.87 4.87 Total: -1.00 -35.83 323.16 -9.12 -44.96 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.50 Total: 4.39 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -2.05 Total: -28.20 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.71 Total: -40.06 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -2.54 Total: -47.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 46.04 SS G_CDS: -0.58 Total: 45.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.83 -9.12 -44.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345370623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.094 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds