Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99754 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00137 * 180.02562 * 11 10 9 14 14 O 1.45200 * 109.47329 * 180.02562 * 13 11 10 15 15 C 1.34232 * 117.00044 * 179.97438 * 14 13 11 16 16 O 1.20829 * 119.99902 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99932 * 179.97438 * 15 14 13 18 18 F 1.39896 * 110.80574 * 313.63267 * 17 15 14 19 19 C 1.54806 * 110.90571 * 190.00345 * 17 15 14 20 20 C 1.54104 * 104.18761 * 220.92341 * 19 17 15 21 21 O 1.43751 * 107.29170 * 357.97312 * 20 19 17 22 22 C 1.44384 * 106.97698 * 26.51339 * 21 20 19 23 23 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 25 25 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 26 26 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 27 27 H 1.09000 * 109.46978 * 300.00347 * 13 11 10 28 28 H 1.08996 * 109.47197 * 59.99985 * 13 11 10 29 29 H 1.08996 * 110.49204 * 339.59875 * 19 17 15 30 30 H 1.08997 * 110.48903 * 102.24897 * 19 17 15 31 31 H 1.09005 * 109.87717 * 117.39304 * 20 19 17 32 32 H 1.08998 * 109.88528 * 238.39765 * 20 19 17 33 33 H 1.08999 * 110.61648 * 201.44293 * 22 21 20 34 34 H 1.08991 * 110.61806 * 78.43986 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7542 -4.8833 0.0011 12 8 0.5618 -5.1049 0.0011 13 6 2.7335 -6.0286 0.0016 14 8 2.0076 -7.2862 0.0015 15 6 2.7388 -8.4119 0.0015 16 8 3.9455 -8.3485 0.0020 17 6 2.0547 -9.7547 0.0019 18 9 1.0254 -9.7877 0.9488 19 6 3.0731 -10.8933 0.2530 20 6 2.6405 -12.0081 -0.7192 21 8 1.4634 -11.5458 -1.4027 22 6 1.5196 -10.1031 -1.4104 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6243 -2.5567 0.8903 26 1 3.1570 -3.4352 0.0009 27 1 3.3603 -5.9712 -0.8883 28 1 3.3601 -5.9705 0.8916 29 1 4.0845 -10.5582 0.0233 30 1 3.0102 -11.2408 1.2841 31 1 3.4357 -12.2009 -1.4394 32 1 2.4155 -12.9182 -0.1632 33 1 0.5256 -9.6811 -1.5591 34 1 2.2067 -9.7498 -2.1792 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346229358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -234.352407 kcal Electronic energy + Delta-G solvation = -20935.830645 eV Core-core repulsion = 17168.759180 eV Total energy + Delta-G solvation = -3767.071465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.21162 -42.04127 -40.57662 -39.89388 -37.85525 -36.21422 -34.43861 -33.21469 -31.19214 -30.37254 -28.56008 -25.52710 -24.53438 -23.75485 -21.70769 -21.68447 -19.79037 -19.24954 -18.42823 -18.23918 -17.68111 -17.47703 -16.98633 -16.88834 -16.45104 -16.26263 -16.10929 -15.75841 -15.27070 -14.86940 -14.54825 -14.31372 -14.02590 -13.95195 -13.71993 -13.47090 -12.95155 -12.86478 -12.72514 -12.61249 -12.34901 -12.23805 -12.08016 -11.71682 -11.50870 -10.96459 -10.84685 -10.82756 -9.95762 -8.30341 -6.47161 0.55672 0.88208 1.44325 1.45997 1.51316 1.57440 2.21950 2.42060 2.54011 2.80347 3.00442 3.05113 3.32649 3.41875 3.65786 3.84509 3.96320 3.98623 4.00788 4.37620 4.45648 4.65382 4.74953 4.86509 4.90675 5.07677 5.20457 5.39689 5.55484 5.60867 5.80989 6.15681 6.61651 6.74631 7.19144 7.33790 8.81817 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.052725 B = 0.002966 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.930354 B = 9438.651001 C = 9683.696832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.498 3.502 12 O -0.584 6.584 13 C 0.057 3.943 14 O -0.339 6.339 15 C 0.461 3.539 16 O -0.489 6.489 17 C 0.092 3.908 18 F -0.182 7.182 19 C -0.163 4.163 20 C 0.043 3.957 21 O -0.379 6.379 22 C 0.040 3.960 23 H 0.269 0.731 24 H -0.007 1.007 25 H -0.008 1.008 26 H 0.414 0.586 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.370 -21.539 -1.477 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.348 5.348 11 C 0.283 3.717 12 O -0.465 6.465 13 C -0.019 4.019 14 O -0.254 6.254 15 C 0.302 3.698 16 O -0.376 6.376 17 C 0.072 3.928 18 F -0.163 7.163 19 C -0.200 4.200 20 C -0.032 4.032 21 O -0.298 6.298 22 C -0.037 4.037 23 H 0.078 0.922 24 H 0.011 0.989 25 H 0.010 0.990 26 H 0.250 0.750 27 H 0.153 0.847 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.550 -21.652 -1.536 24.134 hybrid contribution 0.261 1.395 0.338 1.459 sum 10.811 -20.257 -1.197 22.992 Atomic orbital electron populations 1.70129 1.08285 1.28655 1.49853 1.26057 0.95758 1.03909 0.93842 0.85150 0.78496 0.76948 0.78592 1.19604 1.21123 1.17842 1.21610 0.94460 0.90330 1.53028 0.89470 1.18639 0.88586 0.83810 0.94611 1.46024 1.11776 1.04615 1.72402 1.20679 0.89283 0.84772 0.76924 1.90710 1.19005 1.85290 1.51446 1.22924 0.92624 0.78484 1.07885 1.86609 1.41277 1.14696 1.82774 1.23772 0.86600 0.86529 0.72914 1.90687 1.14751 1.87459 1.44732 1.22545 0.87546 0.90534 0.92207 1.92974 1.60413 1.96995 1.65893 1.23686 0.99621 0.92236 1.04479 1.23505 0.87990 0.97294 0.94457 1.88968 1.44274 1.18324 1.78220 1.24189 1.05001 0.82829 0.91709 0.92197 0.98907 0.99042 0.74983 0.84690 0.85300 0.85974 0.86804 0.88974 0.86907 0.86296 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.99 41.39 29.54 68.60 2.03 43.41 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.56 -29.33 9.28 25.60 0.24 -29.10 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.17 5.43 85.63 0.46 14.63 16 10 N -0.70 -27.90 5.55 -466.77 -2.59 -30.49 16 11 C 0.50 19.41 7.91 87.66 0.69 20.10 16 12 O -0.58 -29.20 16.50 15.76 0.26 -28.94 16 13 C 0.06 1.53 5.94 71.23 0.42 1.95 16 14 O -0.34 -10.05 9.74 -45.08 -0.44 -10.49 16 15 C 0.46 11.05 7.03 71.24 0.50 11.55 16 16 O -0.49 -11.70 15.21 21.95 0.33 -11.36 16 17 C 0.09 1.87 1.68 -10.24 -0.02 1.85 16 18 F -0.18 -4.69 16.98 44.97 0.76 -3.92 16 19 C -0.16 -2.17 6.31 31.58 0.20 -1.97 16 20 C 0.04 0.49 7.70 72.36 0.56 1.05 16 21 O -0.38 -6.93 11.52 -148.98 -1.72 -8.65 16 22 C 0.04 0.71 6.97 72.67 0.51 1.22 16 23 H 0.27 14.96 8.31 -92.71 -0.77 14.18 16 24 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.41 13.04 8.32 -92.71 -0.77 12.27 16 27 H 0.14 2.74 8.13 -2.39 -0.02 2.72 16 28 H 0.13 2.77 8.13 -2.39 -0.02 2.76 16 29 H 0.12 1.50 6.78 -2.39 -0.02 1.48 16 30 H 0.11 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.11 1.48 8.04 -2.39 -0.02 1.46 16 Total: -1.00 -74.62 307.50 3.32 -71.30 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.37 Total: 12.21 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 4.03 Total: 21.98 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.30 Total: -85.54 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -1.56 Total: -59.45 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.76 Total: -3.92 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -74.62 3.32 -71.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346229358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.050 kcal (2) G-P(sol) polarization free energy of solvation -74.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds