Wall clock time and date at job start Mon Mar 30 2020 02:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33566 * 125.83039 * 2 1 4 4 C 1.34859 * 109.91386 * 180.14650 * 3 2 1 5 5 C 1.43194 * 125.64720 * 179.87809 * 4 3 2 6 6 N 4.69717 * 150.54930 * 359.76634 * 2 1 3 7 7 C 1.36057 * 108.70507 * 359.61837 * 4 3 2 8 8 C 1.37808 * 125.83013 * 179.72570 * 2 1 3 9 9 C 1.47341 * 126.79045 * 359.96565 * 8 2 1 10 10 O 1.21525 * 119.99769 * 0.02562 * 9 8 2 11 11 O 1.34752 * 120.00073 * 180.02562 * 9 8 2 12 12 C 1.45204 * 117.00147 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46749 * 29.99808 * 12 11 9 14 14 C 1.50695 * 109.47388 * 150.00080 * 12 11 9 15 15 H 1.07999 * 120.00302 * 115.41275 * 14 12 11 16 16 C 1.37876 * 120.00043 * 295.41273 * 14 12 11 17 17 N 1.31514 * 119.99889 * 174.10898 * 16 14 12 18 18 Si 1.86801 * 120.00147 * 354.11177 * 16 14 12 19 19 H 1.48504 * 109.46988 * 85.20599 * 18 16 14 20 20 H 1.48494 * 109.47422 * 205.20633 * 18 16 14 21 21 H 1.48500 * 109.47172 * 325.21189 * 18 16 14 22 22 C 1.53002 * 109.46895 * 270.00266 * 12 11 9 23 23 C 1.53000 * 117.49939 * 133.98169 * 22 12 11 24 24 C 1.52999 * 117.49764 * 65.32318 * 22 12 11 25 25 H 1.08992 * 109.47391 * 270.27118 * 1 2 3 26 26 H 1.09000 * 109.46929 * 30.27573 * 1 2 3 27 27 H 1.09000 * 109.46584 * 150.26541 * 1 2 3 28 28 H 1.07999 * 126.69255 * 180.20753 * 7 4 3 29 29 H 0.97003 * 119.99592 * 179.97438 * 17 16 14 30 30 H 1.09000 * 115.55181 * 279.65145 * 22 12 11 31 31 H 1.09004 * 117.49628 * 0.02562 * 23 22 12 32 32 H 1.08997 * 117.49985 * 145.01356 * 23 22 12 33 33 H 1.09005 * 117.49810 * 214.97508 * 24 22 12 34 34 H 1.08999 * 117.50041 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2890 1.0829 0.0000 4 6 3.5858 0.7131 -0.0032 5 6 4.7075 1.6032 -0.0067 6 7 5.5973 2.3095 -0.0094 7 6 3.6521 -0.6459 0.0032 8 6 2.3138 -1.1173 0.0053 9 6 1.8737 -2.5234 0.0128 10 8 0.6878 -2.7889 0.0143 11 8 2.7861 -3.5150 0.0180 12 6 2.2805 -4.8761 0.0246 13 1 1.3198 -4.9093 -0.4893 14 6 3.2591 -5.7790 -0.6810 15 1 3.7652 -6.5601 -0.1331 16 6 3.5085 -5.6081 -2.0262 17 7 4.4455 -6.3174 -2.6166 18 14 2.5157 -4.3689 -3.0101 19 1 3.1297 -3.0235 -2.8751 20 1 2.5052 -4.7668 -4.4407 21 1 1.1228 -4.3309 -2.4966 22 6 2.1025 -5.3470 1.4694 23 6 0.7955 -6.0588 1.8245 24 6 1.0502 -4.6332 2.3204 25 1 -0.3634 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3632 -0.8924 -0.5097 28 1 4.5484 -1.2483 0.0058 29 1 4.6207 -6.1973 -3.5631 30 1 3.0107 -5.6832 1.9696 31 1 0.0627 -6.1921 1.0287 32 1 0.8439 -6.8632 2.5585 33 1 1.2660 -4.5003 3.3806 34 1 0.4851 -3.8279 1.8511 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350301634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:28 Heat of formation + Delta-G solvation = -11.176023 kcal Electronic energy + Delta-G solvation = -20943.463262 eV Core-core repulsion = 17616.838676 eV Total energy + Delta-G solvation = -3326.624586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.01494 -39.58694 -36.86359 -36.71518 -35.14113 -33.54057 -32.77675 -32.23576 -28.81878 -27.76346 -24.20453 -23.08015 -22.16413 -21.77296 -20.98090 -19.50598 -18.82220 -17.14001 -16.88895 -16.86245 -15.70274 -15.59537 -15.32800 -14.53979 -14.03737 -13.88676 -13.76188 -13.66175 -13.34868 -13.18857 -12.96505 -12.78103 -12.61547 -12.19605 -11.97748 -11.63804 -11.35190 -10.95506 -10.88421 -10.32799 -10.14494 -9.97680 -9.78346 -9.52442 -9.47002 -9.09573 -8.81897 -8.70817 -6.39425 -4.46065 0.74699 1.47403 1.71448 2.70938 3.04475 3.16843 3.21655 3.30656 3.39389 3.46127 3.84185 4.22412 4.46526 4.48772 4.77430 5.03914 5.18743 5.27411 5.33500 5.40458 5.48639 5.60952 5.62628 5.90539 5.92119 6.00790 6.14525 6.21883 6.44740 6.56606 6.62007 6.70873 6.92016 7.09543 7.29996 7.53717 8.19151 8.56397 8.68630 9.21553 10.69785 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.006802 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.343082 B = 4115.391848 C = 4879.733177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.108 3.892 3 O -0.148 6.148 4 C 0.011 3.989 5 C 0.299 3.701 6 N -0.386 5.386 7 C -0.058 4.058 8 C -0.221 4.221 9 C 0.522 3.478 10 O -0.522 6.522 11 O -0.343 6.343 12 C 0.205 3.795 13 H 0.054 0.946 14 C -0.507 4.507 15 H 0.090 0.910 16 C 0.091 3.909 17 N -0.869 5.869 18 Si 0.866 3.134 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.257 1.257 22 C -0.140 4.140 23 C -0.170 4.170 24 C -0.200 4.200 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.179 0.821 29 H 0.271 0.729 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 10.682 5.651 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.042 6.042 4 C -0.040 4.040 5 C -0.016 4.016 6 N -0.064 5.064 7 C -0.081 4.081 8 C -0.223 4.223 9 C 0.367 3.633 10 O -0.415 6.415 11 O -0.259 6.259 12 C 0.155 3.845 13 H 0.071 0.929 14 C -0.543 4.543 15 H 0.108 0.892 16 C -0.117 4.117 17 N -0.504 5.504 18 Si 0.692 3.308 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.181 1.181 22 C -0.158 4.158 23 C -0.207 4.207 24 C -0.237 4.237 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.135 0.865 28 H 0.196 0.804 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.319 11.881 5.481 14.530 hybrid contribution -0.571 0.167 -0.587 0.836 sum -6.890 12.048 4.895 14.717 Atomic orbital electron populations 1.20783 0.82509 1.05815 1.05089 1.23491 0.94204 0.82206 0.94857 1.83898 1.15038 1.34439 1.70791 1.16115 0.79552 0.89818 1.18504 1.23415 0.91962 0.92521 0.93693 1.81326 1.09636 1.05872 1.09565 1.22171 0.98905 0.91556 0.95425 1.19935 0.93147 0.93068 1.16188 1.20015 0.84996 0.85514 0.72752 1.90688 1.18112 1.84920 1.47821 1.87106 1.39853 1.18286 1.80649 1.20793 0.97406 0.74971 0.91374 0.92864 1.21002 1.26723 1.13075 0.93510 0.89247 1.25061 0.93931 0.94805 0.97857 1.69906 1.28920 1.39607 1.12016 0.86957 0.82113 0.82389 0.79352 1.19232 1.21073 1.18128 1.22620 0.93005 1.03238 0.96971 1.22801 1.00082 0.94736 1.03062 1.23173 1.04945 0.96448 0.99141 0.88421 0.89799 0.86514 0.80359 0.91858 0.87989 0.89015 0.89481 0.90045 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.89 36.01 0.36 -0.49 16 2 C 0.11 1.40 7.41 -34.46 -0.26 1.14 16 3 O -0.15 -1.84 10.61 6.09 0.06 -1.77 16 4 C 0.01 0.14 7.03 -38.44 -0.27 -0.13 16 5 C 0.30 3.91 15.87 -22.48 -0.36 3.55 16 6 N -0.39 -5.53 18.54 41.84 0.78 -4.75 16 7 C -0.06 -0.83 10.67 -38.97 -0.42 -1.25 16 8 C -0.22 -3.53 6.16 -104.96 -0.65 -4.18 16 9 C 0.52 10.22 6.72 34.43 0.23 10.46 16 10 O -0.52 -10.41 11.82 -19.29 -0.23 -10.64 16 11 O -0.34 -7.63 8.41 -40.63 -0.34 -7.98 16 12 C 0.21 4.79 1.52 -27.88 -0.04 4.75 16 13 H 0.05 1.31 5.58 -51.93 -0.29 1.02 16 14 C -0.51 -13.60 9.32 -34.44 -0.32 -13.92 16 15 H 0.09 2.54 7.99 -52.49 -0.42 2.12 16 16 C 0.09 2.50 5.47 -17.82 -0.10 2.41 16 17 N -0.87 -24.94 13.96 55.43 0.77 -24.17 16 18 Si 0.87 21.02 25.98 -169.99 -4.42 16.60 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.26 -6.20 6.52 56.52 0.37 -5.83 16 22 C -0.14 -2.80 5.29 -90.62 -0.48 -3.28 16 23 C -0.17 -2.94 10.18 -26.69 -0.27 -3.21 16 24 C -0.20 -3.45 9.83 -26.69 -0.26 -3.71 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.12 1.35 6.48 -51.93 -0.34 1.01 16 28 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 31 H 0.09 1.61 8.08 -51.93 -0.42 1.19 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 1.89 5.57 -51.93 -0.29 1.60 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -29.36 306.20 -5.05 -34.41 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -3.46 Total: 1.56 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.83 Total: -7.87 kcal Atomic # 7 Polarization: -30.47 SS G_CDS: 1.55 Total: -28.92 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.51 Total: -20.39 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.42 Total: 16.60 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.36 -5.05 -34.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350301634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.237 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds