Wall clock time and date at job start Mon Mar 30 2020 02:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33566 * 125.83039 * 2 1 4 4 C 1.34859 * 109.91386 * 180.14650 * 3 2 1 5 5 C 1.43194 * 125.64720 * 179.87809 * 4 3 2 6 6 N 4.69717 * 150.54930 * 359.76634 * 2 1 3 7 7 C 1.36057 * 108.70507 * 359.61837 * 4 3 2 8 8 C 1.37808 * 125.83013 * 179.72570 * 2 1 3 9 9 C 1.47341 * 126.79045 * 359.96565 * 8 2 1 10 10 O 1.21525 * 119.99769 * 0.02562 * 9 8 2 11 11 O 1.34752 * 120.00073 * 180.02562 * 9 8 2 12 12 C 1.45204 * 117.00147 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46749 * 29.99808 * 12 11 9 14 14 C 1.50695 * 109.47388 * 150.00080 * 12 11 9 15 15 H 1.07999 * 120.00302 * 115.41275 * 14 12 11 16 16 C 1.37876 * 120.00043 * 295.41273 * 14 12 11 17 17 N 1.31514 * 119.99889 * 174.10898 * 16 14 12 18 18 Si 1.86801 * 120.00147 * 354.11177 * 16 14 12 19 19 H 1.48504 * 109.46988 * 85.20599 * 18 16 14 20 20 H 1.48494 * 109.47422 * 205.20633 * 18 16 14 21 21 H 1.48500 * 109.47172 * 325.21189 * 18 16 14 22 22 C 1.53002 * 109.46895 * 270.00266 * 12 11 9 23 23 C 1.53000 * 117.49939 * 133.98169 * 22 12 11 24 24 C 1.52999 * 117.49764 * 65.32318 * 22 12 11 25 25 H 1.08992 * 109.47391 * 270.27118 * 1 2 3 26 26 H 1.09000 * 109.46929 * 30.27573 * 1 2 3 27 27 H 1.09000 * 109.46584 * 150.26541 * 1 2 3 28 28 H 1.07999 * 126.69255 * 180.20753 * 7 4 3 29 29 H 0.97003 * 119.99592 * 179.97438 * 17 16 14 30 30 H 1.09000 * 115.55181 * 279.65145 * 22 12 11 31 31 H 1.09004 * 117.49628 * 0.02562 * 23 22 12 32 32 H 1.08997 * 117.49985 * 145.01356 * 23 22 12 33 33 H 1.09005 * 117.49810 * 214.97508 * 24 22 12 34 34 H 1.08999 * 117.50041 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2890 1.0829 0.0000 4 6 3.5858 0.7131 -0.0032 5 6 4.7075 1.6032 -0.0067 6 7 5.5973 2.3095 -0.0094 7 6 3.6521 -0.6459 0.0032 8 6 2.3138 -1.1173 0.0053 9 6 1.8737 -2.5234 0.0128 10 8 0.6878 -2.7889 0.0143 11 8 2.7861 -3.5150 0.0180 12 6 2.2805 -4.8761 0.0246 13 1 1.3198 -4.9093 -0.4893 14 6 3.2591 -5.7790 -0.6810 15 1 3.7652 -6.5601 -0.1331 16 6 3.5085 -5.6081 -2.0262 17 7 4.4455 -6.3174 -2.6166 18 14 2.5157 -4.3689 -3.0101 19 1 3.1297 -3.0235 -2.8751 20 1 2.5052 -4.7668 -4.4407 21 1 1.1228 -4.3309 -2.4966 22 6 2.1025 -5.3470 1.4694 23 6 0.7955 -6.0588 1.8245 24 6 1.0502 -4.6332 2.3204 25 1 -0.3634 0.0049 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3632 -0.8924 -0.5097 28 1 4.5484 -1.2483 0.0058 29 1 4.6207 -6.1973 -3.5631 30 1 3.0107 -5.6832 1.9696 31 1 0.0627 -6.1921 1.0287 32 1 0.8439 -6.8632 2.5585 33 1 1.2660 -4.5003 3.3806 34 1 0.4851 -3.8279 1.8511 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350301634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:27 Heat of formation + Delta-G solvation = -27.285888 kcal Electronic energy + Delta-G solvation = -20944.161838 eV Core-core repulsion = 17616.838676 eV Total energy + Delta-G solvation = -3327.323163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.10441 -41.18761 -38.28712 -37.91265 -36.73479 -34.88224 -34.63074 -33.22759 -30.62457 -28.84277 -25.71987 -24.73395 -23.29169 -23.13759 -22.16192 -21.14618 -20.19544 -19.13965 -18.38908 -17.96802 -17.32466 -16.82361 -16.63885 -16.21376 -15.55419 -15.13887 -15.03541 -14.77989 -14.74329 -14.43774 -14.18303 -13.87725 -13.82826 -13.70656 -13.37530 -13.20466 -12.92677 -12.78277 -12.30389 -12.05639 -11.85381 -11.42986 -11.32731 -11.23946 -10.99772 -10.92254 -10.71652 -9.78194 -8.49536 -6.59894 -0.30413 0.23062 0.65271 1.24183 1.26770 1.34378 1.63235 1.85371 1.88310 2.12363 2.21129 2.75593 3.00661 3.05757 3.43864 3.67345 3.91947 3.97224 4.13051 4.20479 4.30748 4.38907 4.56390 4.63639 4.65981 4.81612 4.88849 4.89468 5.04524 5.13935 5.31298 5.36205 5.37159 5.55387 5.86304 6.04495 6.14651 6.51464 6.97425 7.11727 8.63945 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.006802 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.343082 B = 4115.391848 C = 4879.733177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.142 3.858 3 O -0.136 6.136 4 C 0.022 3.978 5 C 0.317 3.683 6 N -0.406 5.406 7 C -0.063 4.063 8 C -0.260 4.260 9 C 0.519 3.481 10 O -0.529 6.529 11 O -0.358 6.358 12 C 0.215 3.785 13 H 0.040 0.960 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.047 3.953 17 N -0.913 5.913 18 Si 0.915 3.085 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.256 1.256 22 C -0.172 4.172 23 C -0.158 4.158 24 C -0.177 4.177 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.179 0.821 29 H 0.275 0.725 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 12.919 6.491 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 O -0.029 6.029 4 C -0.029 4.029 5 C 0.002 3.998 6 N -0.084 5.084 7 C -0.085 4.085 8 C -0.263 4.263 9 C 0.366 3.634 10 O -0.422 6.422 11 O -0.275 6.275 12 C 0.164 3.836 13 H 0.058 0.942 14 C -0.555 4.555 15 H 0.077 0.923 16 C -0.157 4.157 17 N -0.551 5.551 18 Si 0.739 3.261 19 H -0.184 1.184 20 H -0.202 1.202 21 H -0.180 1.180 22 C -0.191 4.191 23 C -0.195 4.195 24 C -0.214 4.214 25 H 0.139 0.861 26 H 0.136 0.864 27 H 0.119 0.881 28 H 0.197 0.803 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.231 14.137 6.328 17.540 hybrid contribution -0.038 -0.476 -0.759 0.897 sum -8.270 13.661 5.569 16.913 Atomic orbital electron populations 1.21010 0.79949 1.06660 1.06796 1.23992 0.95237 0.81139 0.91063 1.83951 1.14698 1.33918 1.70341 1.15857 0.79728 0.89043 1.18231 1.23243 0.91558 0.91960 0.93049 1.81355 1.10150 1.06637 1.10257 1.22190 0.98588 0.92191 0.95554 1.19734 0.94570 0.91721 1.20224 1.20355 0.84540 0.86229 0.72277 1.90678 1.18126 1.85220 1.48212 1.86958 1.40631 1.18322 1.81624 1.20388 0.95147 0.75054 0.93045 0.94196 1.21155 1.26774 1.13735 0.93843 0.92343 1.25716 0.94718 0.96397 0.98822 1.69998 1.30850 1.41721 1.12510 0.86180 0.80766 0.80728 0.78418 1.18390 1.20191 1.18029 1.22486 0.94352 1.06481 0.95734 1.22934 0.97563 0.95821 1.03217 1.23190 1.02225 0.96043 0.99936 0.86054 0.86404 0.88073 0.80319 0.91593 0.88538 0.89499 0.86817 0.87311 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 9.89 71.24 0.70 -0.68 16 2 C 0.14 3.22 7.41 25.59 0.19 3.41 16 3 O -0.14 -2.92 10.61 -1.13 -0.01 -2.93 16 4 C 0.02 0.52 7.03 23.01 0.16 0.68 16 5 C 0.32 7.65 15.87 88.33 1.40 9.06 16 6 N -0.41 -10.99 18.54 19.00 0.35 -10.64 16 7 C -0.06 -1.70 10.67 22.67 0.24 -1.46 16 8 C -0.26 -7.84 6.16 -20.08 -0.12 -7.96 16 9 C 0.52 19.78 6.72 70.22 0.47 20.25 16 10 O -0.53 -20.35 11.82 19.76 0.23 -20.11 16 11 O -0.36 -15.99 8.41 -56.62 -0.48 -16.47 16 12 C 0.22 10.16 1.52 29.85 0.05 10.20 16 13 H 0.04 1.98 5.58 -2.39 -0.01 1.97 16 14 C -0.52 -28.83 9.32 25.60 0.24 -28.60 16 15 H 0.06 3.51 7.99 -2.91 -0.02 3.49 16 16 C 0.05 2.64 5.47 84.65 0.46 3.10 16 17 N -0.91 -54.17 13.96 21.45 0.30 -53.87 16 18 Si 0.92 43.74 25.98 68.60 1.78 45.52 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.26 -12.06 6.52 99.48 0.65 -11.41 16 22 C -0.17 -6.85 5.29 -10.79 -0.06 -6.91 16 23 C -0.16 -5.22 10.18 30.62 0.31 -4.91 16 24 C -0.18 -5.73 9.83 30.62 0.30 -5.43 16 25 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 2.03 6.48 -2.39 -0.02 2.01 16 28 H 0.18 4.75 8.06 -2.91 -0.02 4.72 16 29 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.09 2.94 8.08 -2.39 -0.02 2.93 16 32 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 34 H 0.10 3.30 5.57 -2.39 -0.01 3.29 16 Total: -1.00 -64.84 306.20 7.62 -57.23 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.09 Total: 10.52 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 4.35 Total: -9.24 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: 0.65 Total: -64.51 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.25 Total: -39.51 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.78 Total: 45.52 kcal Total: -64.84 7.62 -57.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350301634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.941 kcal (2) G-P(sol) polarization free energy of solvation -64.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds