Wall clock time and date at job start Mon Mar 30 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47059 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.01367 * 53.61569 * 15 14 13 17 17 C 1.53886 * 110.02524 * 292.18878 * 15 14 13 18 18 C 1.54156 * 108.70287 * 193.52294 * 17 15 14 19 19 S 1.82912 * 105.08805 * 27.91430 * 18 17 15 20 20 O 1.42104 * 109.35241 * 244.47399 * 19 18 17 21 21 O 1.42096 * 109.47890 * 111.30606 * 19 18 17 22 22 C 1.55041 * 110.03088 * 174.99909 * 15 14 13 23 23 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 26 26 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 27 27 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 28 28 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 29 29 H 1.08996 * 109.47366 * 299.99598 * 14 13 11 30 30 H 1.08992 * 109.47635 * 60.00246 * 14 13 11 31 31 H 1.08991 * 109.64639 * 313.37987 * 17 15 14 32 32 H 1.09006 * 109.64030 * 73.67604 * 17 15 14 33 33 H 1.08995 * 110.32430 * 269.00699 * 18 17 15 34 34 H 1.09008 * 110.31671 * 146.80915 * 18 17 15 35 35 H 1.09004 * 110.79043 * 279.99159 * 22 15 14 36 36 H 1.09003 * 110.79317 * 43.26550 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1349 -1.5865 0.0004 13 7 6.2023 -3.8040 -0.0008 14 6 7.6673 -3.8040 -0.0002 15 6 8.1773 -5.2465 -0.0018 16 1 7.7292 -5.7997 -0.8271 17 6 7.8377 -5.9269 1.3360 18 6 8.6445 -7.2361 1.4436 19 16 10.1513 -6.9500 0.4469 20 8 10.1579 -7.8383 -0.6622 21 8 11.2814 -6.8816 1.3056 22 6 9.7225 -5.2633 -0.1282 23 1 -0.4849 0.8401 0.0004 24 1 3.8746 -0.6809 0.8905 25 1 3.8752 -0.6798 -0.8895 26 1 3.6584 -3.1503 -0.8903 27 1 3.6578 -3.1508 0.8896 28 1 5.7173 -4.6439 -0.0016 29 1 8.0309 -3.2896 -0.8897 30 1 8.0303 -3.2909 0.8902 31 1 8.1012 -5.2652 2.1610 32 1 6.7713 -6.1496 1.3735 33 1 8.0721 -8.0683 1.0340 34 1 8.9097 -7.4330 2.4825 35 1 10.0274 -5.1188 -1.1647 36 1 10.1716 -4.5064 0.5147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001441050739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:54 Heat of formation + Delta-G solvation = -123.841894 kcal Electronic energy + Delta-G solvation = -18844.057337 eV Core-core repulsion = 15647.991143 eV Total energy + Delta-G solvation = -3196.066194 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.59215 -37.72434 -37.42415 -36.41942 -33.98886 -33.52871 -31.43529 -30.77972 -27.69311 -25.76514 -24.31602 -21.45668 -21.12329 -19.74978 -19.25620 -17.41211 -17.37940 -16.97000 -16.17734 -15.93298 -15.61447 -15.42179 -14.82129 -14.65483 -14.20241 -13.99826 -13.49346 -13.26472 -12.72719 -12.60564 -12.59170 -12.51875 -12.43631 -12.30092 -11.90132 -11.47080 -11.42143 -11.12727 -10.99818 -10.79097 -10.21892 -10.09871 -9.82799 -9.33688 -9.21937 -9.03278 -8.54391 -6.06685 -4.05742 -0.41996 2.05165 3.01759 3.05121 3.30835 3.34988 3.41854 3.52017 3.53854 3.82206 4.02052 4.10392 4.30606 4.35723 4.47462 4.66816 4.87340 5.02308 5.16936 5.25414 5.28791 5.32886 5.36186 5.53252 5.69817 6.00703 6.02886 6.45123 6.62935 7.31260 7.38299 7.62615 7.74942 8.44745 8.55443 8.96095 9.56253 11.06119 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.053884 B = 0.002912 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.506701 B = 9611.520507 C = 9858.467238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.510 3.490 12 O -0.539 6.539 13 N -0.745 5.745 14 C 0.133 3.867 15 C -0.102 4.102 16 H 0.104 0.896 17 C -0.115 4.115 18 C -0.591 4.591 19 S 2.389 3.611 20 O -0.937 6.937 21 O -0.940 6.940 22 C -0.583 4.583 23 H 0.264 0.736 24 H 0.023 0.977 25 H 0.019 0.981 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.399 0.601 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.893 -15.793 1.921 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.299 3.701 12 O -0.414 6.414 13 N -0.400 5.400 14 C 0.008 3.992 15 C -0.122 4.122 16 H 0.122 0.878 17 C -0.153 4.153 18 C -0.721 4.721 19 S 2.573 3.427 20 O -0.934 6.934 21 O -0.937 6.937 22 C -0.713 4.713 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.233 0.767 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 19.993 -15.479 1.758 25.346 hybrid contribution -0.569 0.905 0.121 1.076 sum 19.424 -14.575 1.879 24.357 Atomic orbital electron populations 1.69910 1.06311 1.27020 1.50951 1.24981 0.94714 0.99266 0.94299 0.86787 0.80584 0.83366 0.78755 1.20234 1.21428 1.18556 1.21106 0.89261 0.94562 1.51483 0.90942 1.19369 0.96439 0.90183 0.97668 1.21678 0.87805 1.03363 1.03385 1.21569 0.91635 0.82681 0.74226 1.90665 1.70826 1.31460 1.48473 1.46179 1.06194 1.09458 1.78138 1.21178 0.81309 0.93526 1.03196 1.22118 0.92108 0.98871 0.99122 0.87782 1.22054 1.02564 0.92979 0.97710 1.30493 1.19466 1.06399 1.15714 1.09058 0.77849 0.78798 0.76978 1.93633 1.87049 1.61517 1.51238 1.93623 1.46878 1.86425 1.66749 1.30698 1.03752 1.23369 1.13460 0.92679 0.95840 0.96278 0.89553 0.89539 0.76660 0.90845 0.90974 0.89123 0.88444 0.84363 0.84244 0.83982 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.53 -14.74 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.21 5.64 -27.88 -0.16 -2.37 16 11 C 0.51 8.44 7.83 -10.98 -0.09 8.36 16 12 O -0.54 -11.23 15.98 5.56 0.09 -11.14 16 13 N -0.74 -8.06 5.40 -60.30 -0.33 -8.39 16 14 C 0.13 1.18 5.09 -4.04 -0.02 1.16 16 15 C -0.10 -0.53 2.63 -89.08 -0.23 -0.77 16 16 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 17 C -0.11 -0.48 5.52 -25.67 -0.14 -0.62 16 18 C -0.59 -2.15 7.26 37.76 0.27 -1.88 16 19 S 2.39 14.47 6.10 -107.50 -0.66 13.81 16 20 O -0.94 -9.21 18.15 -57.73 -1.05 -10.26 16 21 O -0.94 -9.34 18.15 -57.73 -1.05 -10.39 16 22 C -0.58 -2.63 6.67 38.24 0.26 -2.38 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 25 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 26 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.40 3.05 8.05 -40.82 -0.33 2.72 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.67 8.07 -51.93 -0.42 0.26 16 31 H 0.09 0.37 8.04 -51.93 -0.42 -0.05 16 32 H 0.10 0.35 7.79 -51.93 -0.40 -0.06 16 33 H 0.14 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.14 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.14 0.51 8.10 -51.93 -0.42 0.09 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -39.58 313.10 -8.10 -47.68 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -5.30 Total: -5.01 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -0.63 Total: -11.73 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.45 Total: -35.28 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -2.01 Total: -31.78 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Atomic # 16 Polarization: 14.47 SS G_CDS: -0.66 Total: 13.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -39.58 -8.10 -47.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441050739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.160 kcal (2) G-P(sol) polarization free energy of solvation -39.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds