Wall clock time and date at job start Mon Mar 30 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47059 * 180.02562 * 14 13 11 16 16 H 1.08997 * 110.01367 * 53.61569 * 15 14 13 17 17 C 1.53886 * 110.02524 * 292.18878 * 15 14 13 18 18 C 1.54156 * 108.70287 * 193.52294 * 17 15 14 19 19 S 1.82912 * 105.08805 * 27.91430 * 18 17 15 20 20 O 1.42104 * 109.35241 * 244.47399 * 19 18 17 21 21 O 1.42096 * 109.47890 * 111.30606 * 19 18 17 22 22 C 1.55041 * 110.03088 * 174.99909 * 15 14 13 23 23 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 25 25 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 26 26 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 27 27 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 28 28 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 29 29 H 1.08996 * 109.47366 * 299.99598 * 14 13 11 30 30 H 1.08992 * 109.47635 * 60.00246 * 14 13 11 31 31 H 1.08991 * 109.64639 * 313.37987 * 17 15 14 32 32 H 1.09006 * 109.64030 * 73.67604 * 17 15 14 33 33 H 1.08995 * 110.32430 * 269.00699 * 18 17 15 34 34 H 1.09008 * 110.31671 * 146.80915 * 18 17 15 35 35 H 1.09004 * 110.79043 * 279.99159 * 22 15 14 36 36 H 1.09003 * 110.79317 * 43.26550 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 8 6.1349 -1.5865 0.0004 13 7 6.2023 -3.8040 -0.0008 14 6 7.6673 -3.8040 -0.0002 15 6 8.1773 -5.2465 -0.0018 16 1 7.7292 -5.7997 -0.8271 17 6 7.8377 -5.9269 1.3360 18 6 8.6445 -7.2361 1.4436 19 16 10.1513 -6.9500 0.4469 20 8 10.1579 -7.8383 -0.6622 21 8 11.2814 -6.8816 1.3056 22 6 9.7225 -5.2633 -0.1282 23 1 -0.4849 0.8401 0.0004 24 1 3.8746 -0.6809 0.8905 25 1 3.8752 -0.6798 -0.8895 26 1 3.6584 -3.1503 -0.8903 27 1 3.6578 -3.1508 0.8896 28 1 5.7173 -4.6439 -0.0016 29 1 8.0309 -3.2896 -0.8897 30 1 8.0303 -3.2909 0.8902 31 1 8.1012 -5.2652 2.1610 32 1 6.7713 -6.1496 1.3735 33 1 8.0721 -8.0683 1.0340 34 1 8.9097 -7.4330 2.4825 35 1 10.0274 -5.1188 -1.1647 36 1 10.1716 -4.5064 0.5147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001441050739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:54 Heat of formation + Delta-G solvation = -156.294258 kcal Electronic energy + Delta-G solvation = -18845.464577 eV Core-core repulsion = 15647.991143 eV Total energy + Delta-G solvation = -3197.473434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75347 -38.39489 -38.03784 -37.03105 -35.53775 -34.91576 -33.28185 -31.33149 -28.83866 -27.06597 -24.91432 -23.08889 -21.71528 -21.06450 -19.76673 -19.18953 -17.89471 -17.77213 -17.41487 -16.72132 -16.51654 -16.46781 -16.19779 -15.45473 -15.21576 -14.80862 -14.67302 -14.53840 -14.32858 -13.69313 -13.37816 -13.22539 -13.11196 -13.04352 -12.88931 -12.78070 -12.47216 -12.08739 -11.94914 -11.77626 -11.74997 -11.66267 -11.37957 -11.24144 -10.77109 -10.71951 -10.03657 -8.30578 -6.33202 -0.87300 1.34151 1.36458 1.50860 1.62643 1.73425 2.26925 2.35822 2.71766 3.05514 3.07823 3.36354 3.60559 3.67421 3.94350 4.04163 4.10965 4.23805 4.42501 4.44559 4.54206 4.72278 4.79289 4.83316 4.91120 5.02894 5.10987 5.16029 5.36196 5.47925 5.52019 5.63408 6.24794 6.63311 6.74046 7.32398 7.36238 8.85082 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.053884 B = 0.002912 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.506701 B = 9611.520507 C = 9858.467238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.003 3.997 10 C -0.118 4.118 11 C 0.514 3.486 12 O -0.588 6.588 13 N -0.718 5.718 14 C 0.129 3.871 15 C -0.097 4.097 16 H 0.122 0.878 17 C -0.120 4.120 18 C -0.567 4.567 19 S 2.392 3.608 20 O -0.981 6.981 21 O -0.986 6.986 22 C -0.573 4.573 23 H 0.267 0.733 24 H 0.010 0.990 25 H 0.007 0.993 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.418 0.582 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.577 -16.573 2.225 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.566 4.566 8 H 0.069 0.931 9 C -0.035 4.035 10 C -0.158 4.158 11 C 0.303 3.697 12 O -0.468 6.468 13 N -0.372 5.372 14 C 0.004 3.996 15 C -0.117 4.117 16 H 0.140 0.860 17 C -0.159 4.159 18 C -0.700 4.700 19 S 2.581 3.419 20 O -0.978 6.978 21 O -0.983 6.983 22 C -0.704 4.704 23 H 0.076 0.924 24 H 0.028 0.972 25 H 0.026 0.974 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.256 0.744 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.174 0.826 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 20.722 -16.344 2.050 26.471 hybrid contribution -0.840 1.078 0.040 1.367 sum 19.881 -15.266 2.090 25.153 Atomic orbital electron populations 1.70025 1.07815 1.28061 1.52642 1.25819 0.95474 1.02887 0.94372 0.85829 0.79261 0.79537 0.79073 1.19492 1.20542 1.18443 1.21463 0.91379 0.93663 1.50093 0.93071 1.19231 0.93798 0.94136 0.96314 1.21503 0.89484 0.99632 1.05180 1.21138 0.90917 0.83454 0.74232 1.90653 1.71384 1.33485 1.51259 1.45867 1.07275 1.08567 1.75538 1.21323 0.79552 0.95888 1.02794 1.22112 0.92219 0.96735 1.00657 0.86001 1.22162 1.03518 0.93049 0.97123 1.30324 1.16915 1.06942 1.15782 1.08718 0.78174 0.78794 0.76176 1.93575 1.87951 1.63259 1.52996 1.93562 1.50033 1.87140 1.67547 1.30613 1.03428 1.21961 1.14409 0.92432 0.97201 0.97442 0.87904 0.87708 0.74390 0.91651 0.91211 0.88648 0.86877 0.82582 0.82777 0.82922 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.39 13.96 21.45 0.30 -58.10 16 2 C 0.01 0.70 5.47 84.66 0.46 1.17 16 3 Si 0.94 45.96 27.47 68.60 1.88 47.85 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 7 C -0.53 -29.64 9.66 25.60 0.25 -29.39 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 9 C 0.00 0.15 3.33 29.85 0.10 0.25 16 10 C -0.12 -4.05 5.64 29.85 0.17 -3.88 16 11 C 0.51 15.95 7.83 87.66 0.69 16.64 16 12 O -0.59 -23.89 15.98 -3.02 -0.05 -23.94 16 13 N -0.72 -13.27 5.40 -463.07 -2.50 -15.77 16 14 C 0.13 1.92 5.09 86.38 0.44 2.36 16 15 C -0.10 -0.68 2.63 -9.79 -0.03 -0.71 16 16 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 17 C -0.12 -0.54 5.52 31.28 0.17 -0.37 16 18 C -0.57 -2.25 7.26 72.37 0.53 -1.73 16 19 S 2.39 25.87 6.10 -56.49 -0.34 25.52 16 20 O -0.98 -18.62 18.15 -127.47 -2.31 -20.93 16 21 O -0.99 -19.30 18.15 -127.47 -2.31 -21.61 16 22 C -0.57 -3.86 6.67 72.68 0.48 -3.38 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.01 0.48 7.16 -2.39 -0.02 0.47 16 25 H 0.01 0.36 7.53 -2.38 -0.02 0.34 16 26 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 27 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.42 4.62 8.05 -92.71 -0.75 3.88 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.13 8.07 -2.39 -0.02 1.11 16 31 H 0.09 0.41 8.04 -2.39 -0.02 0.39 16 32 H 0.11 0.25 7.79 -2.38 -0.02 0.23 16 33 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.15 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.15 0.77 8.10 -2.39 -0.02 0.75 16 Total: -1.00 -86.89 313.10 -1.80 -88.69 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: 0.28 Total: -2.66 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.26 Total: -19.04 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.20 Total: -73.86 kcal Atomic # 8 Polarization: -61.81 SS G_CDS: -4.67 Total: -66.48 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.85 kcal Atomic # 16 Polarization: 25.87 SS G_CDS: -0.34 Total: 25.52 kcal Total: -86.89 -1.80 -88.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441050739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.609 kcal (2) G-P(sol) polarization free energy of solvation -86.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds