Wall clock time and date at job start Mon Mar 30 2020 01:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99979 * 2 1 4 4 H 1.48494 * 109.47266 * 269.99964 * 3 2 1 5 5 H 1.48508 * 109.46735 * 29.99478 * 3 2 1 6 6 H 1.48498 * 109.47292 * 149.99493 * 3 2 1 7 7 C 1.37878 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00092 * 173.00383 * 7 2 1 9 9 C 1.50692 * 119.99845 * 353.01229 * 7 2 1 10 10 C 1.53000 * 115.55265 * 84.78158 * 9 7 2 11 11 S 1.81404 * 109.47268 * 39.91629 * 10 9 7 12 12 O 1.42103 * 110.53924 * 62.30514 * 11 10 9 13 13 O 1.42097 * 110.53802 * 285.56034 * 11 10 9 14 14 N 1.65596 * 104.44911 * 173.93390 * 11 10 9 15 15 C 1.47138 * 120.87229 * 269.71536 * 14 11 10 16 16 C 1.53392 * 108.21803 * 230.85021 * 15 14 11 17 17 C 1.53147 * 108.94367 * 308.17260 * 16 15 14 18 18 O 1.42941 * 109.51235 * 59.06281 * 17 16 15 19 19 C 1.43106 * 113.95966 * 297.52563 * 18 17 16 20 20 C 1.53001 * 117.51818 * 230.48310 * 9 7 2 21 21 C 1.52994 * 60.00246 * 107.48155 * 20 9 7 22 22 H 0.97001 * 120.00448 * 5.04046 * 1 2 3 23 23 H 1.08996 * 109.47248 * 279.91426 * 10 9 7 24 24 H 1.09002 * 109.47259 * 159.91873 * 10 9 7 25 25 H 1.08996 * 109.71908 * 350.53445 * 15 14 11 26 26 H 1.09001 * 109.71185 * 111.17088 * 15 14 11 27 27 H 1.09004 * 109.55699 * 188.33603 * 16 15 14 28 28 H 1.09001 * 109.64538 * 68.06556 * 16 15 14 29 29 H 1.08995 * 109.46215 * 299.05069 * 17 16 15 30 30 H 1.08995 * 109.45665 * 179.06803 * 17 16 15 31 31 H 1.08992 * 109.60498 * 295.86890 * 19 18 17 32 32 H 1.09001 * 109.59462 * 175.38180 * 19 18 17 33 33 H 1.09003 * 117.49897 * 214.96946 * 20 9 7 34 34 H 1.09000 * 117.49676 * 359.97438 * 20 9 7 35 35 H 1.08998 * 117.50094 * 252.51716 * 21 20 9 36 36 H 1.08998 * 117.50387 * 107.49419 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0786 -1.1975 -0.1134 9 6 1.2596 -2.4942 0.1599 10 6 0.6802 -3.0848 -1.1271 11 16 1.8649 -2.8604 -2.4824 12 8 3.0722 -3.5587 -2.2099 13 8 1.8827 -1.5054 -2.9097 14 7 1.1966 -3.6816 -3.7556 15 6 1.5039 -5.1025 -3.9825 16 6 1.9335 -5.2727 -5.4452 17 6 0.8749 -4.6373 -6.3514 18 8 0.7390 -3.2516 -6.0280 19 6 0.2853 -3.0083 -4.6927 20 6 1.7654 -3.4732 1.2213 21 6 0.4656 -2.6997 1.4515 22 1 -0.4851 0.8368 -0.0738 23 1 -0.2526 -2.5770 -1.3722 24 1 0.4882 -4.1483 -0.9846 25 1 2.3139 -5.4135 -3.3228 26 1 0.6175 -5.7061 -3.7870 27 1 2.0238 -6.3337 -5.6779 28 1 2.8932 -4.7811 -5.6048 29 1 -0.0803 -5.1405 -6.2021 30 1 1.1802 -4.7389 -7.3928 31 1 -0.7226 -3.4046 -4.5710 32 1 0.2855 -1.9361 -4.4963 33 1 1.6853 -4.5381 1.0027 34 1 2.6375 -3.1771 1.8042 35 1 0.4824 -1.8946 2.1860 36 1 -0.4696 -3.2556 1.3844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475282680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:09 Heat of formation + Delta-G solvation = -87.387671 kcal Electronic energy + Delta-G solvation = -20736.490896 eV Core-core repulsion = 17542.005476 eV Total energy + Delta-G solvation = -3194.485420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.08280 -36.74479 -36.22996 -34.96827 -34.32790 -32.08224 -31.97044 -28.20163 -25.66110 -25.54067 -24.99398 -21.24373 -21.16651 -19.56237 -18.41696 -17.26834 -16.69629 -16.27533 -15.49512 -15.21966 -15.11852 -14.71072 -14.50217 -14.28951 -13.78231 -13.60183 -13.08370 -13.00310 -12.22368 -11.84372 -11.69163 -11.45202 -11.17304 -11.13658 -11.02544 -10.95078 -10.88810 -10.69466 -10.52091 -10.37730 -10.13945 -9.89197 -9.66208 -9.04586 -8.85807 -8.54334 -8.12846 -6.16893 -4.31679 1.08128 3.32818 3.38129 3.41095 3.43803 3.88698 4.39951 4.69890 4.74079 4.83617 4.89561 5.05588 5.13016 5.14210 5.27455 5.38013 5.40829 5.53542 5.64038 5.73205 5.81371 5.93340 6.11293 6.19597 6.29318 6.34113 6.59178 6.66990 6.72831 6.94045 7.10976 7.16331 7.37628 7.77972 8.17227 8.77215 9.45764 10.90680 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.007101 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.063470 B = 3942.033743 C = 4480.411252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.098 3.902 3 Si 0.890 3.110 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.050 3.950 10 C -0.557 4.557 11 S 2.623 3.377 12 O -0.970 6.970 13 O -0.936 6.936 14 N -1.035 6.035 15 C 0.112 3.888 16 C -0.167 4.167 17 C 0.061 3.939 18 O -0.386 6.386 19 C 0.288 3.712 20 C -0.204 4.204 21 C -0.144 4.144 22 H 0.265 0.735 23 H 0.127 0.873 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 -10.473 -8.294 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.109 4.109 3 Si 0.716 3.284 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.047 3.953 10 C -0.690 4.690 11 S 2.721 3.279 12 O -0.960 6.960 13 O -0.927 6.927 14 N -0.878 5.878 15 C -0.013 4.013 16 C -0.206 4.206 17 C -0.016 4.016 18 O -0.301 6.301 19 C 0.126 3.874 20 C -0.241 4.241 21 C -0.183 4.183 22 H 0.075 0.925 23 H 0.145 0.855 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.664 -9.727 -8.490 13.018 hybrid contribution -0.433 0.300 0.437 0.684 sum -2.096 -9.427 -8.053 12.575 Atomic orbital electron populations 1.69945 1.06199 1.27525 1.46455 1.24894 0.94728 0.99311 0.92010 0.86598 0.80121 0.82690 0.78981 1.19511 1.20962 1.19418 1.20591 0.93684 0.88773 1.55092 0.91278 1.18184 0.98804 0.94051 0.84233 1.30008 1.16418 1.06286 1.16282 1.04802 0.75603 0.73452 0.74038 1.93457 1.42350 1.74997 1.85245 1.93528 1.86199 1.33267 1.79657 1.59076 1.63514 1.20669 1.44525 1.21444 1.01182 0.81374 0.97332 1.22470 1.00715 1.01674 0.95764 1.22501 0.97660 0.82370 0.99047 1.88044 1.87694 1.24447 1.29913 1.22628 0.89883 0.99019 0.75912 1.23126 0.98724 0.95549 1.06731 1.22533 0.92399 1.01110 1.02236 0.92512 0.85453 0.88620 0.88393 0.91708 0.90044 0.90350 0.93118 0.88936 0.92265 0.85578 0.91271 0.89650 0.89595 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.90 12.96 55.43 0.72 -23.18 16 2 C 0.10 2.70 5.39 -17.82 -0.10 2.60 16 3 Si 0.89 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.96 6.89 -34.44 -0.24 -15.20 16 8 H 0.07 1.95 7.82 -52.48 -0.41 1.54 16 9 C 0.05 1.20 1.64 -155.66 -0.26 0.95 16 10 C -0.56 -11.63 6.29 37.16 0.23 -11.40 16 11 S 2.62 56.01 4.64 -107.50 -0.50 55.51 16 12 O -0.97 -22.46 16.60 -57.54 -0.96 -23.41 16 13 O -0.94 -23.43 15.73 -57.54 -0.91 -24.33 16 14 N -1.03 -17.08 3.33 -118.36 -0.39 -17.47 16 15 C 0.11 1.48 6.55 -3.49 -0.02 1.46 16 16 C -0.17 -1.89 6.32 -26.45 -0.17 -2.06 16 17 C 0.06 0.68 6.79 37.23 0.25 0.94 16 18 O -0.39 -5.81 10.86 -35.23 -0.38 -6.19 16 19 C 0.29 4.38 7.43 60.14 0.45 4.83 16 20 C -0.20 -4.41 9.88 -26.73 -0.26 -4.67 16 21 C -0.14 -3.26 9.50 -26.73 -0.25 -3.51 16 22 H 0.27 6.97 8.32 -40.82 -0.34 6.63 16 23 H 0.13 2.67 8.14 -51.93 -0.42 2.25 16 24 H 0.10 1.65 7.95 -51.92 -0.41 1.24 16 25 H 0.10 1.35 6.87 -51.93 -0.36 0.99 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.13 2.08 6.87 -51.93 -0.36 1.72 16 33 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 34 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -32.88 308.99 -8.47 -41.34 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.32 Total: 2.33 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -0.36 Total: -26.07 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.32 Total: -40.65 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -2.24 Total: -53.94 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 56.01 SS G_CDS: -0.50 Total: 55.51 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.88 -8.47 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475282680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.043 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds