Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47313 * 240.00655 * 3 2 1 5 5 H 1.48506 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47112 * 120.00233 * 3 2 1 7 7 C 1.37871 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47139 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47069 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99955 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99853 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99950 * 179.97438 * 12 11 10 15 15 C 1.52577 * 109.19430 * 58.77467 * 14 12 11 16 16 C 1.53036 * 109.99385 * 190.16422 * 15 14 12 17 17 S 1.81667 * 109.07712 * 296.49981 * 16 15 14 18 18 O 1.42099 * 108.66349 * 168.57891 * 17 16 15 19 19 O 1.42099 * 108.66329 * 299.82153 * 17 16 15 20 20 C 1.81664 * 101.31039 * 54.24906 * 17 16 15 21 21 C 1.52588 * 109.23952 * 180.02562 * 14 12 11 22 22 H 0.97001 * 120.00735 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47661 * 59.99835 * 9 7 2 24 24 H 1.08998 * 109.47076 * 299.99365 * 9 7 2 25 25 H 1.08994 * 109.47108 * 59.99338 * 10 9 7 26 26 H 1.08998 * 109.46488 * 299.99566 * 10 9 7 27 27 H 0.97004 * 120.00390 * 359.97438 * 11 10 9 28 28 H 1.08999 * 109.24077 * 299.44629 * 14 12 11 29 29 H 1.09002 * 109.30212 * 70.05475 * 15 14 12 30 30 H 1.09000 * 109.46132 * 310.37482 * 15 14 12 31 31 H 1.09002 * 109.55147 * 176.59390 * 16 15 14 32 32 H 1.09003 * 109.54767 * 56.40206 * 16 15 14 33 33 H 1.09002 * 109.55358 * 65.55729 * 20 17 16 34 34 H 1.08999 * 109.55462 * 185.74896 * 20 17 16 35 35 H 1.08998 * 109.38394 * 49.59972 * 21 14 12 36 36 H 1.09004 * 109.30132 * 289.85697 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5130 -4.9307 -0.0020 12 6 2.1869 -6.0980 -0.0024 13 8 3.3997 -6.0979 -0.0019 14 6 1.4335 -7.4031 -0.0023 15 6 0.5353 -7.4638 -1.2342 16 6 -0.4199 -8.6547 -1.1271 17 16 0.5471 -10.1925 -1.1162 18 8 -0.3099 -11.2660 -0.7526 19 8 1.2872 -10.2729 -2.3266 20 6 1.6992 -9.8791 0.2530 21 6 2.4297 -8.5588 -0.0022 22 1 -0.4851 0.8400 0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6242 -2.5575 0.8880 25 1 2.8714 -3.6046 0.8889 26 1 2.8726 -3.6038 -0.8910 27 1 0.5429 -4.9308 -0.0020 28 1 0.8160 -7.4614 0.8940 29 1 1.1531 -7.5746 -2.1254 30 1 -0.0421 -6.5424 -1.3085 31 1 -1.0980 -8.6563 -1.9806 32 1 -0.9952 -8.5789 -0.2044 33 1 1.1444 -9.8136 1.1889 34 1 2.4228 -10.6920 0.3142 35 1 3.1706 -8.3977 0.7808 36 1 2.9297 -8.6036 -0.9698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521782437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -129.431900 kcal Electronic energy + Delta-G solvation = -19265.869007 eV Core-core repulsion = 16069.560413 eV Total energy + Delta-G solvation = -3196.308595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99354 -37.41118 -36.54079 -36.29003 -35.01976 -32.97884 -32.14712 -30.05176 -28.29938 -24.86352 -23.90234 -22.24615 -21.02418 -19.94541 -19.14303 -17.48420 -16.97123 -16.65037 -16.41751 -15.99697 -15.45567 -15.11733 -14.58718 -14.41619 -14.25569 -13.80115 -13.47082 -13.41753 -12.79882 -12.46893 -12.40983 -12.32547 -12.27410 -12.14972 -11.75543 -11.36930 -11.29081 -11.06963 -11.00680 -10.71336 -10.40944 -10.33934 -9.90530 -9.54983 -9.28386 -8.65222 -8.44288 -6.15390 -4.18679 -0.28873 2.34659 2.76305 3.27191 3.28746 3.31484 3.34436 3.38367 3.73048 4.09253 4.20303 4.28549 4.35932 4.48780 4.56301 4.78084 4.90297 5.02907 5.18474 5.21839 5.27080 5.44768 5.54853 5.73776 5.88339 6.23344 6.24988 6.63832 6.77175 7.42645 7.52719 7.81540 7.85542 8.19848 8.47601 8.86957 9.46666 10.96079 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.046127 B = 0.003209 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.880028 B = 8722.272576 C = 9055.330170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.720 5.720 12 C 0.513 3.487 13 O -0.544 6.544 14 C -0.131 4.131 15 C -0.106 4.106 16 C -0.601 4.601 17 S 2.414 3.586 18 O -0.947 6.947 19 O -0.935 6.935 20 C -0.601 4.601 21 C -0.093 4.093 22 H 0.263 0.737 23 H 0.022 0.978 24 H 0.022 0.978 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.398 0.602 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.028 -18.739 0.456 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.369 5.369 12 C 0.298 3.702 13 O -0.422 6.422 14 C -0.152 4.152 15 C -0.145 4.145 16 C -0.730 4.730 17 S 2.596 3.404 18 O -0.944 6.944 19 O -0.932 6.932 20 C -0.730 4.730 21 C -0.131 4.131 22 H 0.073 0.927 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.232 0.768 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.118 0.882 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.385 -19.338 -0.094 19.388 hybrid contribution -0.176 1.646 0.640 1.775 sum -1.561 -17.692 0.545 17.769 Atomic orbital electron populations 1.69932 1.06104 1.27079 1.50171 1.24988 0.94897 0.99438 0.94882 0.86565 0.79526 0.82587 0.78817 1.20068 1.21217 1.20097 1.21003 0.93226 0.90378 1.51671 0.92280 1.19321 0.94176 0.91129 0.97832 1.21770 0.96106 0.81381 1.00954 1.46358 1.10585 1.06584 1.73415 1.20132 0.88047 0.85083 0.76984 1.90697 1.13798 1.87592 1.50074 1.21541 0.98037 0.94826 1.00800 1.21311 0.96432 0.98341 0.98398 1.30223 1.12608 1.17994 1.12181 1.08158 0.77512 0.77282 0.77430 1.93593 1.65935 1.50357 1.84497 1.93602 1.71440 1.86061 1.42097 1.30233 1.16122 1.07186 1.19478 1.21092 0.97742 0.88127 1.06181 0.92733 0.95924 0.95968 0.92445 0.92367 0.76816 0.87399 0.88845 0.88455 0.84297 0.84561 0.84785 0.84464 0.88186 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.39 5.61 -4.04 -0.02 2.36 16 11 N -0.72 -11.06 5.36 -60.29 -0.32 -11.38 16 12 C 0.51 7.43 7.14 -10.98 -0.08 7.35 16 13 O -0.54 -10.03 15.77 5.56 0.09 -9.94 16 14 C -0.13 -1.20 2.27 -92.20 -0.21 -1.41 16 15 C -0.11 -0.84 5.00 -26.93 -0.13 -0.98 16 16 C -0.60 -3.49 6.34 37.18 0.24 -3.25 16 17 S 2.41 19.03 5.30 -107.50 -0.57 18.46 16 18 O -0.95 -10.52 18.10 -57.82 -1.05 -11.57 16 19 O -0.93 -10.97 17.97 -57.82 -1.04 -12.01 16 20 C -0.60 -3.67 6.35 37.17 0.24 -3.44 16 21 C -0.09 -0.82 4.47 -26.93 -0.12 -0.94 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.40 5.08 7.70 -40.82 -0.31 4.77 16 28 H 0.11 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 30 H 0.10 0.73 7.18 -51.93 -0.37 0.35 16 31 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.14 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.97 7.72 -51.93 -0.40 0.57 16 36 H 0.09 0.89 8.02 -51.93 -0.42 0.47 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -36.11 311.44 -8.39 -44.51 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.27 Total: -0.90 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.65 Total: -13.03 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.41 Total: -36.12 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -2.00 Total: -33.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 19.03 SS G_CDS: -0.57 Total: 18.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.11 -8.39 -44.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521782437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.924 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds