Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47313 * 240.00655 * 3 2 1 5 5 H 1.48506 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47112 * 120.00233 * 3 2 1 7 7 C 1.37871 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47139 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47069 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99955 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99853 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99950 * 179.97438 * 12 11 10 15 15 C 1.52577 * 109.19430 * 58.77467 * 14 12 11 16 16 C 1.53036 * 109.99385 * 190.16422 * 15 14 12 17 17 S 1.81667 * 109.07712 * 296.49981 * 16 15 14 18 18 O 1.42099 * 108.66349 * 168.57891 * 17 16 15 19 19 O 1.42099 * 108.66329 * 299.82153 * 17 16 15 20 20 C 1.81664 * 101.31039 * 54.24906 * 17 16 15 21 21 C 1.52588 * 109.23952 * 180.02562 * 14 12 11 22 22 H 0.97001 * 120.00735 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47661 * 59.99835 * 9 7 2 24 24 H 1.08998 * 109.47076 * 299.99365 * 9 7 2 25 25 H 1.08994 * 109.47108 * 59.99338 * 10 9 7 26 26 H 1.08998 * 109.46488 * 299.99566 * 10 9 7 27 27 H 0.97004 * 120.00390 * 359.97438 * 11 10 9 28 28 H 1.08999 * 109.24077 * 299.44629 * 14 12 11 29 29 H 1.09002 * 109.30212 * 70.05475 * 15 14 12 30 30 H 1.09000 * 109.46132 * 310.37482 * 15 14 12 31 31 H 1.09002 * 109.55147 * 176.59390 * 16 15 14 32 32 H 1.09003 * 109.54767 * 56.40206 * 16 15 14 33 33 H 1.09002 * 109.55358 * 65.55729 * 20 17 16 34 34 H 1.08999 * 109.55462 * 185.74896 * 20 17 16 35 35 H 1.08998 * 109.38394 * 49.59972 * 21 14 12 36 36 H 1.09004 * 109.30132 * 289.85697 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5130 -4.9307 -0.0020 12 6 2.1869 -6.0980 -0.0024 13 8 3.3997 -6.0979 -0.0019 14 6 1.4335 -7.4031 -0.0023 15 6 0.5353 -7.4638 -1.2342 16 6 -0.4199 -8.6547 -1.1271 17 16 0.5471 -10.1925 -1.1162 18 8 -0.3099 -11.2660 -0.7526 19 8 1.2872 -10.2729 -2.3266 20 6 1.6992 -9.8791 0.2530 21 6 2.4297 -8.5588 -0.0022 22 1 -0.4851 0.8400 0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6242 -2.5575 0.8880 25 1 2.8714 -3.6046 0.8889 26 1 2.8726 -3.6038 -0.8910 27 1 0.5429 -4.9308 -0.0020 28 1 0.8160 -7.4614 0.8940 29 1 1.1531 -7.5746 -2.1254 30 1 -0.0421 -6.5424 -1.3085 31 1 -1.0980 -8.6563 -1.9806 32 1 -0.9952 -8.5789 -0.2044 33 1 1.1444 -9.8136 1.1889 34 1 2.4228 -10.6920 0.3142 35 1 3.1706 -8.3977 0.7808 36 1 2.9297 -8.6036 -0.9698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521782437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -158.037869 kcal Electronic energy + Delta-G solvation = -19267.109455 eV Core-core repulsion = 16069.560413 eV Total energy + Delta-G solvation = -3197.549043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11355 -38.18903 -37.39409 -37.02588 -36.55408 -34.83262 -32.80302 -31.65601 -29.24929 -26.62300 -24.53259 -23.42993 -22.56437 -21.01330 -19.77153 -18.62721 -18.29259 -17.72066 -17.26991 -16.75728 -16.71987 -16.47063 -16.29280 -15.32672 -15.15442 -14.94657 -14.45858 -14.30425 -14.03971 -13.75113 -13.30587 -13.20155 -13.16702 -13.03152 -12.92236 -12.79212 -12.55350 -12.37832 -12.21772 -12.04637 -11.67317 -11.63681 -11.46072 -10.94087 -10.75665 -10.59508 -9.99933 -8.24008 -6.34009 -0.88017 1.42471 1.43817 1.51834 1.62691 1.79546 2.20743 2.44049 2.77051 3.03083 3.11095 3.43997 3.57570 3.69460 3.73208 4.06201 4.12101 4.23486 4.37582 4.50709 4.54576 4.62938 4.71351 4.87627 4.90149 4.94506 5.09808 5.18880 5.31444 5.50572 5.60204 5.79709 6.17259 6.63972 6.79301 7.29184 7.35433 8.87288 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.046127 B = 0.003209 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.880028 B = 8722.272576 C = 9055.330170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.715 5.715 12 C 0.511 3.489 13 O -0.587 6.587 14 C -0.122 4.122 15 C -0.111 4.111 16 C -0.582 4.582 17 S 2.417 3.583 18 O -0.981 6.981 19 O -0.984 6.984 20 C -0.584 4.584 21 C -0.097 4.097 22 H 0.266 0.734 23 H 0.010 0.990 24 H 0.011 0.989 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.413 0.587 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -19.010 1.421 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.366 5.366 12 C 0.298 3.702 13 O -0.467 6.467 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.714 4.714 17 S 2.604 3.396 18 O -0.979 6.979 19 O -0.981 6.981 20 C -0.715 4.715 21 C -0.135 4.135 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.249 0.751 28 H 0.168 0.832 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.172 0.828 32 H 0.191 0.809 33 H 0.187 0.813 34 H 0.168 0.832 35 H 0.111 0.889 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.208 -19.661 0.851 19.803 hybrid contribution 0.090 1.750 0.361 1.789 sum -2.118 -17.911 1.212 18.077 Atomic orbital electron populations 1.70029 1.07425 1.28036 1.50948 1.25815 0.95766 1.02920 0.94454 0.85558 0.78365 0.78416 0.79073 1.19480 1.20643 1.19402 1.21460 0.93566 0.92116 1.51603 0.92464 1.19130 0.94231 0.91631 0.96489 1.21213 0.95064 0.82479 0.99771 1.46152 1.11240 1.05492 1.73740 1.21050 0.87784 0.86217 0.75124 1.90681 1.16042 1.88296 1.51724 1.21612 0.98081 0.91212 1.03341 1.21342 0.96620 0.99764 0.97232 1.30080 1.11951 1.14380 1.14963 1.07807 0.77269 0.77640 0.76903 1.93551 1.66800 1.52673 1.84842 1.93542 1.72584 1.87101 1.44862 1.30097 1.15800 1.05859 1.19736 1.21072 0.97873 0.89406 1.05188 0.92546 0.97161 0.97100 0.93562 0.93722 0.75054 0.83233 0.90088 0.87481 0.82797 0.80939 0.81291 0.83218 0.88900 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.69 13.29 21.44 0.28 -52.41 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -29.75 9.11 25.60 0.23 -29.52 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.02 1.08 5.09 29.85 0.15 1.23 16 10 C 0.14 5.55 5.61 86.38 0.48 6.03 16 11 N -0.72 -21.24 5.36 -463.06 -2.48 -23.72 16 12 C 0.51 14.19 7.14 87.66 0.63 14.82 16 13 O -0.59 -21.67 15.77 -3.03 -0.05 -21.71 16 14 C -0.12 -1.91 2.27 -11.82 -0.03 -1.93 16 15 C -0.11 -1.46 5.00 30.47 0.15 -1.31 16 16 C -0.58 -4.71 6.34 71.99 0.46 -4.26 16 17 S 2.42 33.93 5.30 -56.49 -0.30 33.63 16 18 O -0.98 -20.30 18.10 -127.38 -2.31 -22.60 16 19 O -0.98 -23.07 17.97 -127.38 -2.29 -25.36 16 20 C -0.58 -5.45 6.35 71.99 0.46 -5.00 16 21 C -0.10 -1.53 4.47 30.47 0.14 -1.40 16 22 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 23 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.41 9.77 7.70 -92.71 -0.71 9.05 16 28 H 0.15 1.16 8.09 -2.39 -0.02 1.14 16 29 H 0.08 1.30 8.03 -2.39 -0.02 1.28 16 30 H 0.11 1.27 7.18 -2.39 -0.02 1.25 16 31 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.17 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.17 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.66 7.72 -2.39 -0.02 1.64 16 36 H 0.07 1.45 8.02 -2.38 -0.02 1.43 16 Total: -1.00 -79.71 311.44 -1.61 -81.32 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.36 Total: 6.57 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 3.13 Total: -20.34 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -2.20 Total: -76.13 kcal Atomic # 8 Polarization: -65.04 SS G_CDS: -4.64 Total: -69.68 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 33.93 SS G_CDS: -0.30 Total: 33.63 kcal Total: -79.71 -1.61 -81.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521782437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.718 kcal (2) G-P(sol) polarization free energy of solvation -79.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds