Wall clock time and date at job start Mon Mar 30 2020 01:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 115.54616 * 208.77252 * 3 2 1 5 5 C 1.50700 * 109.47352 * 34.33122 * 4 3 2 6 6 O 1.20821 * 119.99927 * 359.97438 * 5 4 3 7 7 O 1.34228 * 120.00180 * 180.02562 * 5 4 3 8 8 C 1.45200 * 117.00208 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47147 * 29.99856 * 8 7 5 10 10 C 1.50706 * 109.46954 * 149.99815 * 8 7 5 11 11 H 1.07995 * 120.00167 * 359.72237 * 10 8 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 8 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47487 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00158 * 14 12 10 17 17 H 1.48508 * 109.46883 * 239.99963 * 14 12 10 18 18 C 1.50697 * 109.46919 * 269.99657 * 8 7 5 19 19 C 1.34523 * 125.78572 * 144.99911 * 18 8 7 20 20 C 1.41385 * 106.83572 * 179.97438 * 19 18 8 21 21 C 1.34508 * 106.84352 * 0.02562 * 20 19 18 22 22 O 1.34300 * 125.79420 * 324.69094 * 18 8 7 23 23 C 1.52989 * 117.52019 * 354.47023 * 3 2 1 24 24 C 1.52994 * 117.49884 * 63.10539 * 3 2 1 25 25 H 1.09002 * 109.47567 * 274.32884 * 4 3 2 26 26 H 1.09002 * 109.47208 * 154.32891 * 4 3 2 27 27 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 28 28 H 1.07994 * 126.58127 * 0.03812 * 19 18 8 29 29 H 1.08000 * 126.57504 * 179.97438 * 20 19 18 30 30 H 1.08008 * 125.78744 * 180.02562 * 21 20 19 31 31 H 1.09005 * 117.50190 * 214.97338 * 23 3 2 32 32 H 1.09001 * 117.49935 * 359.97438 * 23 3 2 33 33 H 1.08995 * 117.50211 * 359.97317 * 24 3 2 34 34 H 1.09002 * 117.49865 * 144.97778 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.2673 1.2110 0.6644 5 6 2.4252 1.6657 1.8285 6 8 1.4024 1.0820 2.0987 7 8 2.8108 2.7198 2.5646 8 6 1.9505 3.1021 3.6701 9 1 1.4411 2.2191 4.0562 10 6 2.7828 3.7203 4.7638 11 1 3.8520 3.8123 4.6423 12 6 2.1799 4.1638 5.9217 13 7 0.8786 4.0468 6.0720 14 14 3.2114 4.9308 7.2771 15 1 4.6380 4.9453 6.8654 16 1 2.7521 6.3216 7.5219 17 1 3.0641 4.1345 8.5220 18 6 0.9297 4.1013 3.1899 19 6 -0.3416 4.1952 3.6194 20 6 -0.9365 5.2621 2.9076 21 6 0.0065 5.7560 2.0854 22 8 1.1366 5.0527 2.2649 23 6 3.3156 -1.3495 0.1307 24 6 3.3148 -0.6129 -1.2103 25 1 3.3537 2.0210 -0.0598 26 1 4.2598 0.9344 1.0202 27 1 0.4545 4.3585 6.8868 28 1 -0.8164 3.5753 4.3655 29 1 -1.9534 5.6127 3.0047 30 1 -0.1216 6.5815 1.4009 31 1 4.2508 -1.3756 0.6901 32 1 2.6911 -2.2387 0.2172 33 1 2.6898 -1.0175 -2.0064 34 1 4.2493 -0.1542 -1.5334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526992003.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:57 Heat of formation + Delta-G solvation = -33.184333 kcal Electronic energy + Delta-G solvation = -20936.614267 eV Core-core repulsion = 17609.035329 eV Total energy + Delta-G solvation = -3327.578938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.21973 -41.46638 -39.33969 -37.40078 -36.50482 -35.32643 -33.57467 -31.93343 -30.63993 -28.58112 -25.36275 -24.29620 -23.30805 -22.55750 -22.16209 -21.13807 -19.23185 -18.60637 -18.47445 -17.72769 -17.15666 -16.90244 -16.47410 -16.18933 -15.83839 -15.08477 -14.78510 -14.75187 -14.28170 -14.01043 -13.72524 -13.55975 -13.55708 -13.34811 -13.16864 -13.00588 -12.83281 -12.78982 -12.24353 -12.19807 -12.01674 -11.65814 -11.39604 -11.26354 -10.88808 -10.84265 -10.56074 -9.15326 -8.24589 -6.54932 1.05902 1.30152 1.39494 1.41182 1.54283 1.71329 1.84617 1.91127 2.07135 2.36335 2.39055 2.89677 3.00011 3.11675 3.52330 3.69270 3.97414 4.12922 4.29794 4.34326 4.53287 4.62005 4.65761 4.67201 4.85551 4.88561 5.11092 5.11622 5.29838 5.32878 5.39004 5.45686 5.66271 5.80267 5.94912 6.45576 6.56055 6.75854 6.91272 7.17862 8.71503 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.005854 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.056342 B = 4781.797419 C = 5610.821090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.266 3.734 3 C -0.083 4.083 4 C -0.058 4.058 5 C 0.435 3.565 6 O -0.547 6.547 7 O -0.353 6.353 8 C 0.304 3.696 9 H 0.036 0.964 10 C -0.551 4.551 11 H 0.081 0.919 12 C 0.020 3.980 13 N -0.895 5.895 14 Si 0.984 3.016 15 H -0.256 1.256 16 H -0.280 1.280 17 H -0.273 1.273 18 C -0.007 4.007 19 C -0.196 4.196 20 C -0.233 4.233 21 C -0.069 4.069 22 O -0.192 6.192 23 C -0.136 4.136 24 C -0.101 4.101 25 H 0.141 0.859 26 H 0.167 0.833 27 H 0.269 0.731 28 H 0.121 0.879 29 H 0.162 0.838 30 H 0.242 0.758 31 H 0.144 0.856 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.621 -4.484 -12.760 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.049 4.049 3 C -0.087 4.087 4 C -0.095 4.095 5 C 0.280 3.720 6 O -0.438 6.438 7 O -0.269 6.269 8 C 0.250 3.750 9 H 0.054 0.946 10 C -0.588 4.588 11 H 0.099 0.901 12 C -0.183 4.183 13 N -0.530 5.530 14 Si 0.807 3.193 15 H -0.179 1.179 16 H -0.205 1.205 17 H -0.198 1.198 18 C -0.057 4.057 19 C -0.216 4.216 20 C -0.252 4.252 21 C -0.136 4.136 22 O -0.089 6.089 23 C -0.174 4.174 24 C -0.139 4.139 25 H 0.159 0.841 26 H 0.184 0.816 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.180 0.820 30 H 0.258 0.742 31 H 0.162 0.838 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.698 -4.549 -12.655 15.495 hybrid contribution -0.677 0.510 1.575 1.789 sum 7.021 -4.039 -11.080 13.725 Atomic orbital electron populations 1.81118 1.14827 1.09669 1.12536 1.28244 0.94402 0.92023 0.90278 1.18411 0.80278 0.99008 1.10975 1.21165 0.99318 0.97360 0.91675 1.24936 0.85191 0.77437 0.84432 1.90655 1.27440 1.56109 1.69563 1.86512 1.52330 1.45842 1.42196 1.18700 0.85521 0.89550 0.81267 0.94634 1.21216 0.94854 1.43592 0.99134 0.90083 1.25909 0.96471 0.95351 1.00558 1.70202 1.10392 1.44826 1.27570 0.85117 0.79042 0.77628 0.77560 1.17939 1.20533 1.19793 1.23437 0.96344 0.93673 0.92252 1.21347 0.94600 1.02715 1.02888 1.22064 1.01982 1.00190 1.00985 1.24673 0.83486 1.00755 1.04661 1.83945 1.37160 1.38267 1.49530 1.23530 1.02069 0.90915 1.00924 1.23485 1.02197 0.98403 0.89802 0.84106 0.81575 0.92165 0.86142 0.82030 0.74196 0.83789 0.88534 0.87291 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -21.33 18.35 20.01 0.37 -20.96 16 2 C 0.27 9.06 12.05 89.44 1.08 10.14 16 3 C -0.08 -1.72 2.26 -53.99 -0.12 -1.84 16 4 C -0.06 -1.24 5.99 29.85 0.18 -1.06 16 5 C 0.43 17.22 7.74 71.24 0.55 17.78 16 6 O -0.55 -26.49 12.78 21.98 0.28 -26.21 16 7 O -0.35 -16.47 9.84 -48.76 -0.48 -16.95 16 8 C 0.30 16.85 2.41 29.10 0.07 16.92 16 9 H 0.04 2.23 7.16 -2.39 -0.02 2.21 16 10 C -0.55 -30.96 8.89 25.60 0.23 -30.73 16 11 H 0.08 4.37 7.81 -2.91 -0.02 4.35 16 12 C 0.02 1.09 5.30 84.66 0.45 1.54 16 13 N -0.89 -51.56 10.48 21.45 0.22 -51.33 16 14 Si 0.98 42.73 29.54 68.60 2.03 44.75 16 15 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 18 C -0.01 -0.36 5.67 24.83 0.14 -0.22 16 19 C -0.20 -10.57 9.04 22.19 0.20 -10.37 16 20 C -0.23 -10.31 10.91 22.19 0.24 -10.07 16 21 C -0.07 -2.81 12.09 66.97 0.81 -2.01 16 22 O -0.19 -9.51 10.63 0.91 0.01 -9.50 16 23 C -0.14 -1.72 9.86 30.59 0.30 -1.42 16 24 C -0.10 -0.92 9.93 30.59 0.30 -0.61 16 25 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.17 2.10 7.90 -2.39 -0.02 2.08 16 27 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.12 6.96 7.49 -2.91 -0.02 6.94 16 29 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16 30 H 0.24 6.64 8.06 -2.91 -0.02 6.62 16 31 H 0.14 1.03 8.05 -2.38 -0.02 1.01 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -84.14 310.47 7.99 -76.15 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.13 Total: 16.01 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.43 Total: -11.97 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: 0.59 Total: -72.29 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.19 Total: -52.66 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -84.14 7.99 -76.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992003.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.968 kcal (2) G-P(sol) polarization free energy of solvation -84.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds