Wall clock time and date at job start Mon Mar 30 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99984 * 2 1 4 4 H 1.48494 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47082 * 300.00277 * 3 2 1 6 6 H 1.48502 * 109.46933 * 59.99981 * 3 2 1 7 7 C 1.37876 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46822 * 299.99622 * 9 7 2 11 11 O 1.42894 * 109.47123 * 59.99690 * 9 7 2 12 12 C 1.53003 * 109.47151 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.46915 * 179.97438 * 12 9 7 14 14 C 1.47896 * 111.00177 * 170.00135 * 13 12 9 15 15 C 1.54335 * 107.10627 * 214.74486 * 14 13 12 16 16 H 1.09008 * 111.63847 * 238.59684 * 15 14 13 17 17 C 1.55127 * 107.61735 * 115.84904 * 15 14 13 18 18 S 1.83674 * 101.78996 * 207.09146 * 17 15 14 19 19 O 1.42103 * 109.61540 * 148.86604 * 18 17 15 20 20 O 1.42101 * 109.61949 * 282.64749 * 18 17 15 21 21 C 1.83197 * 95.29785 * 35.85185 * 18 17 15 22 22 C 1.52994 * 105.45613 * 338.33508 * 21 18 17 23 23 H 1.09010 * 110.17608 * 236.78443 * 22 21 18 24 24 C 1.48629 * 111.00229 * 52.52038 * 13 12 9 25 25 H 0.97005 * 120.00261 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00214 * 60.00198 * 11 9 7 27 27 H 1.08999 * 109.46724 * 59.99901 * 12 9 7 28 28 H 1.09000 * 109.47295 * 300.00161 * 12 9 7 29 29 H 1.09003 * 109.90256 * 334.11439 * 14 13 12 30 30 H 1.09002 * 109.90857 * 95.37281 * 14 13 12 31 31 H 1.09005 * 110.95908 * 325.21734 * 17 15 14 32 32 H 1.08997 * 110.96599 * 88.92629 * 17 15 14 33 33 H 1.08997 * 110.24892 * 97.33307 * 21 18 17 34 34 H 1.08996 * 110.24993 * 219.33758 * 21 18 17 35 35 H 1.08996 * 110.71119 * 277.94864 * 24 13 12 36 36 H 1.09007 * 110.70163 * 41.18206 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 8 0.4299 -2.5751 -1.1665 12 6 2.2454 -3.6621 0.0005 13 7 1.5109 -4.9342 0.0012 14 6 2.4234 -6.0732 -0.2386 15 6 1.6405 -7.1161 -1.0641 16 1 1.5862 -8.0763 -0.5510 17 6 2.3401 -7.2448 -2.4426 18 16 0.9505 -7.7742 -3.5207 19 8 1.1517 -7.2774 -4.8368 20 8 0.6849 -9.1547 -3.3134 21 6 -0.3185 -6.7638 -2.6693 22 6 0.2486 -6.4867 -1.2756 23 1 -0.4438 -6.8394 -0.5110 24 6 0.5130 -4.9737 -1.0996 25 1 -0.4851 0.8401 0.0004 26 1 0.9223 -2.5300 -1.9975 27 1 2.8720 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 3.2971 -5.7375 -0.7971 30 1 2.7320 -6.5080 0.7122 31 1 2.7418 -6.2849 -2.7672 32 1 3.1227 -8.0030 -2.4135 33 1 -0.4773 -5.8279 -3.2049 34 1 -1.2535 -7.3187 -2.5927 35 1 -0.4004 -4.4538 -0.8107 36 1 0.9288 -4.5464 -2.0122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560187038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:24 Heat of formation + Delta-G solvation = -106.280590 kcal Electronic energy + Delta-G solvation = -20278.540736 eV Core-core repulsion = 17083.236057 eV Total energy + Delta-G solvation = -3195.304679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.66525 -37.16197 -36.22223 -36.04995 -33.39508 -32.23435 -31.20836 -28.88842 -26.48995 -26.14699 -23.90337 -21.42833 -20.45093 -19.85306 -18.92853 -17.28377 -16.84736 -16.30994 -15.92214 -15.49354 -14.88021 -14.70318 -14.53514 -14.29757 -13.92203 -13.19188 -13.09774 -12.70638 -12.69557 -12.29291 -12.18942 -12.15117 -11.96057 -11.70942 -11.37192 -11.19281 -11.00396 -10.92870 -10.72031 -10.54848 -10.41647 -10.25197 -10.01178 -9.08984 -8.65248 -8.12732 -7.95448 -6.08376 -4.26762 -0.05338 2.34047 3.22071 3.30901 3.33493 3.44125 3.79360 4.12312 4.30526 4.38728 4.50660 4.61859 4.66289 4.76881 5.04659 5.18760 5.25948 5.40698 5.55942 5.58025 5.69409 5.82030 5.93380 5.99634 6.16416 6.22204 6.27044 6.59207 6.81978 7.30467 7.38647 7.68333 7.82101 8.10515 8.75804 9.23938 9.49578 10.95811 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.036064 B = 0.004456 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.215428 B = 6282.334769 C = 6474.438562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.574 4.574 8 H 0.055 0.945 9 C 0.231 3.769 10 H 0.065 0.935 11 O -0.561 6.561 12 C 0.021 3.979 13 N -0.516 5.516 14 C 0.044 3.956 15 C -0.096 4.096 16 H 0.107 0.893 17 C -0.576 4.576 18 S 2.376 3.624 19 O -0.943 6.943 20 O -0.939 6.939 21 C -0.571 4.571 22 C -0.093 4.093 23 H 0.104 0.896 24 C 0.060 3.940 25 H 0.260 0.740 26 H 0.341 0.659 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 -14.062 -3.513 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.612 4.612 8 H 0.074 0.926 9 C 0.173 3.827 10 H 0.082 0.918 11 O -0.364 6.364 12 C -0.107 4.107 13 N -0.241 5.241 14 C -0.085 4.085 15 C -0.116 4.116 16 H 0.125 0.875 17 C -0.706 4.706 18 S 2.562 3.438 19 O -0.940 6.940 20 O -0.937 6.937 21 C -0.701 4.701 22 C -0.114 4.114 23 H 0.122 0.878 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.185 0.815 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.128 0.872 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.434 -14.669 -3.350 15.115 hybrid contribution 1.543 1.703 -0.427 2.338 sum 2.976 -12.966 -3.777 13.829 Atomic orbital electron populations 1.70075 1.05919 1.26424 1.46885 1.25013 0.94688 0.99136 0.93721 0.86614 0.80192 0.83812 0.77740 1.19748 1.20884 1.20822 1.21622 0.93175 0.91429 1.54974 0.92641 1.19403 0.88128 0.88918 0.86244 0.91762 1.86648 1.38749 1.95680 1.15353 1.23230 0.97572 0.89946 0.99907 1.64874 1.13257 1.02827 1.43093 1.23065 0.94904 0.91617 0.98914 1.22631 0.93928 1.01299 0.93749 0.87522 1.30755 1.16243 1.12698 1.10930 1.09487 0.80653 0.76796 0.76908 1.93607 1.84334 1.81824 1.34248 1.93610 1.83576 1.29381 1.87095 1.30201 1.15824 1.15751 1.08359 1.22110 0.95292 0.99697 0.94280 0.87779 1.23530 0.98662 0.91037 0.93496 0.92978 0.81529 0.91028 0.95651 0.93279 0.90402 0.84531 0.84629 0.83893 0.84636 0.87184 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 12.84 55.43 0.71 -23.76 16 2 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.57 -15.02 8.76 -34.44 -0.30 -15.33 16 8 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.23 5.43 2.91 -27.88 -0.08 5.35 16 10 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 11 O -0.56 -12.82 9.00 -35.23 -0.32 -13.14 16 12 C 0.02 0.40 4.82 -3.83 -0.02 0.39 16 13 N -0.52 -8.33 5.39 -230.37 -1.24 -9.57 16 14 C 0.04 0.55 6.28 -2.58 -0.02 0.54 16 15 C -0.10 -0.97 3.56 -88.16 -0.31 -1.28 16 16 H 0.11 0.90 8.14 -51.92 -0.42 0.47 16 17 C -0.58 -5.10 6.58 38.28 0.25 -4.85 16 18 S 2.38 24.40 6.05 -107.50 -0.65 23.75 16 19 O -0.94 -13.12 18.16 -57.69 -1.05 -14.17 16 20 O -0.94 -12.27 18.16 -57.69 -1.05 -13.32 16 21 C -0.57 -5.32 6.90 37.15 0.26 -5.06 16 22 C -0.09 -1.04 3.38 -89.14 -0.30 -1.34 16 23 H 0.10 1.11 8.14 -51.92 -0.42 0.68 16 24 C 0.06 0.90 3.82 -2.03 -0.01 0.89 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.34 7.01 8.33 45.56 0.38 7.39 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.03 0.47 7.81 -51.93 -0.41 0.06 16 29 H 0.05 0.60 6.72 -51.93 -0.35 0.25 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.14 1.20 7.64 -51.93 -0.40 0.81 16 32 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.14 1.31 7.58 -51.93 -0.39 0.91 16 34 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.11 1.93 6.86 -51.93 -0.36 1.58 16 36 H 0.05 0.71 6.58 -51.92 -0.34 0.36 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -33.63 297.44 -9.12 -42.75 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.36 Total: 6.03 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -0.63 Total: -18.60 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -0.53 Total: -33.33 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -2.41 Total: -40.62 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 24.40 SS G_CDS: -0.65 Total: 23.75 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.63 -9.12 -42.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560187038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.531 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds