Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47181 * 11.70042 * 3 2 1 5 5 C 1.37100 * 119.99357 * 264.38799 * 4 3 2 6 6 H 1.08001 * 119.99510 * 196.16544 * 5 4 3 7 7 C 1.38942 * 120.00519 * 16.16572 * 5 4 3 8 8 N 1.31411 * 119.99932 * 20.86895 * 7 5 4 9 9 Si 1.86806 * 120.00001 * 200.87216 * 7 5 4 10 10 H 1.48498 * 109.47179 * 84.94239 * 9 7 5 11 11 H 1.48503 * 109.46894 * 204.93837 * 9 7 5 12 12 H 1.48494 * 109.47123 * 324.94071 * 9 7 5 13 13 C 1.34770 * 120.00341 * 84.38368 * 4 3 2 14 14 O 1.21289 * 120.00269 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99976 * 0.28091 * 13 4 3 16 16 C 1.50695 * 109.47413 * 179.72179 * 15 13 4 17 17 C 1.38245 * 119.92840 * 269.72729 * 16 15 13 18 18 C 1.38242 * 120.14910 * 179.72549 * 17 16 15 19 19 C 1.38562 * 119.99730 * 0.53973 * 18 17 16 20 20 O 1.35997 * 120.07202 * 179.70434 * 19 18 17 21 21 C 1.39155 * 119.85559 * 359.73388 * 19 18 17 22 22 O 1.35991 * 120.07565 * 180.02562 * 21 19 18 23 23 C 1.38247 * 119.92563 * 89.99367 * 16 15 13 24 24 H 4.40643 * 5.51379 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47225 * 251.69659 * 3 2 1 26 26 H 1.09002 * 109.46795 * 131.69587 * 3 2 1 27 27 H 0.96998 * 119.99799 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.46701 * 299.71869 * 15 13 4 29 29 H 1.08998 * 109.47181 * 59.71554 * 15 13 4 30 30 H 1.08007 * 119.92826 * 359.97202 * 17 16 15 31 31 H 1.08002 * 120.00281 * 180.25330 * 18 17 16 32 32 H 0.96696 * 113.99920 * 270.02485 * 20 19 18 33 33 H 0.96700 * 113.99926 * 269.98113 * 22 21 19 34 34 H 1.08001 * 120.00283 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3516 -0.2801 5 6 3.4733 -2.1860 0.7539 6 1 4.0691 -3.0666 0.5642 7 6 3.0497 -1.8987 2.0456 8 7 2.0213 -1.1036 2.2383 9 14 3.9422 -2.6426 3.5084 10 1 5.1131 -1.7979 3.8557 11 1 3.0188 -2.7102 4.6695 12 1 4.4040 -4.0109 3.1628 13 6 3.2521 -1.7755 -1.5540 14 8 3.6574 -2.8949 -1.7859 15 6 2.8861 -0.8562 -2.6907 16 6 3.1124 -1.5637 -4.0019 17 6 4.3387 -1.4704 -4.6333 18 6 4.5531 -2.1222 -5.8334 19 6 3.5341 -2.8620 -6.4117 20 8 3.7414 -3.4989 -7.5952 21 6 2.2979 -2.9512 -5.7790 22 8 1.2948 -3.6764 -6.3422 23 6 2.0914 -2.3000 -4.5734 24 1 -1.0498 -0.0004 0.0001 25 1 3.0092 0.3236 0.9757 26 1 3.0090 0.6844 -0.7674 27 1 1.7254 -0.9033 3.1400 28 1 1.8365 -0.5742 -2.6064 29 1 3.5072 0.0386 -2.6487 30 1 5.1324 -0.8903 -4.1860 31 1 5.5133 -2.0511 -6.3226 32 1 3.5270 -2.9646 -8.3722 33 1 0.7299 -3.1681 -6.9402 34 1 1.1331 -2.3681 -4.0801 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567960416.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = -23.631292 kcal Electronic energy + Delta-G solvation = -20541.004858 eV Core-core repulsion = 17213.840171 eV Total energy + Delta-G solvation = -3327.164687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09700 -38.68678 -36.85171 -36.59374 -35.08847 -32.29834 -31.40075 -31.16034 -29.77387 -27.10295 -26.27508 -24.32161 -22.66070 -21.67206 -19.21067 -18.59950 -17.92624 -17.40846 -16.64788 -16.20141 -16.06339 -15.76071 -14.74894 -14.58898 -14.35294 -14.10445 -13.75612 -13.47310 -12.81379 -12.63477 -12.34219 -12.26738 -11.96869 -11.61241 -11.47543 -11.24876 -11.07417 -10.98097 -10.49697 -10.32039 -10.07569 -9.40370 -9.30991 -8.91830 -8.67890 -8.52233 -8.15357 -7.89005 -6.34608 -3.86569 1.31757 1.43588 3.15156 3.25288 3.29574 3.61680 3.71582 3.88617 4.01113 4.15926 4.19757 4.20860 4.93627 4.99338 5.05317 5.14147 5.43081 5.47904 5.55257 5.72047 5.78846 5.89912 6.05256 6.10886 6.28076 6.38288 6.45108 6.73967 6.79005 6.89127 7.00135 7.44314 7.55770 7.86845 8.02914 8.41421 8.76540 9.12684 9.34150 9.89195 10.66286 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.025954 B = 0.004580 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.586063 B = 6111.412977 C = 6547.036174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.113 4.113 3 C 0.230 3.770 4 N -0.442 5.442 5 C -0.313 4.313 6 H 0.105 0.895 7 C 0.031 3.969 8 N -0.865 5.865 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.453 3.547 14 O -0.574 6.574 15 C -0.100 4.100 16 C -0.033 4.033 17 C -0.099 4.099 18 C -0.129 4.129 19 C 0.066 3.934 20 O -0.489 6.489 21 C 0.079 3.921 22 O -0.488 6.488 23 C -0.116 4.116 24 H 0.199 0.801 25 H 0.113 0.887 26 H 0.062 0.938 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.379 0.621 33 H 0.381 0.619 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 6.595 -13.339 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.115 4.115 3 C 0.106 3.894 4 N -0.160 5.160 5 C -0.440 4.440 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.503 5.503 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.241 3.759 14 O -0.457 6.457 15 C -0.141 4.141 16 C -0.033 4.033 17 C -0.118 4.118 18 C -0.148 4.148 19 C 0.021 3.979 20 O -0.298 6.298 21 C 0.034 3.966 22 O -0.297 6.297 23 C -0.135 4.135 24 H 0.216 0.784 25 H 0.131 0.869 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.234 0.766 33 H 0.235 0.765 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.229 5.157 -12.567 13.585 hybrid contribution -0.469 0.397 0.426 0.747 sum -0.240 5.554 -12.140 13.353 Atomic orbital electron populations 1.24287 0.95399 1.02453 1.05958 1.23223 0.94390 0.98050 0.95814 1.18325 0.84223 0.84656 1.02153 1.43722 1.56148 1.11595 1.04574 1.19686 1.31085 1.08302 0.84970 0.87766 1.25271 0.95252 0.97727 0.99075 1.70077 1.20981 1.36873 1.22417 0.86005 0.79111 0.79703 0.80306 1.20266 1.21117 1.19479 1.19850 0.84721 0.87990 0.83359 1.90571 1.50435 1.21012 1.83667 1.20704 1.03504 0.98580 0.91262 1.19367 0.93165 0.96302 0.94486 1.20914 0.96541 0.99763 0.94542 1.21217 0.98860 0.97444 0.97268 1.18711 0.93127 0.97258 0.88830 1.84942 1.88993 1.42183 1.13695 1.18697 0.87813 0.95719 0.94336 1.84951 1.42982 1.37526 1.64214 1.21205 1.00576 0.96560 0.95116 0.78391 0.86898 0.92046 0.92129 0.89019 0.89154 0.85416 0.85261 0.76627 0.76479 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.26 19.25 29.55 0.57 -4.69 16 2 C -0.11 -2.45 10.97 -37.12 -0.41 -2.86 16 3 C 0.23 4.89 4.91 -6.83 -0.03 4.86 16 4 N -0.44 -10.91 2.60 -117.93 -0.31 -11.21 16 5 C -0.31 -8.55 9.35 -14.94 -0.14 -8.69 16 6 H 0.10 3.03 7.36 -52.49 -0.39 2.64 16 7 C 0.03 0.79 4.90 -17.47 -0.09 0.70 16 8 N -0.87 -22.41 9.39 55.50 0.52 -21.88 16 9 Si 0.92 20.44 29.60 -169.99 -5.03 15.41 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.45 10.75 7.56 -10.99 -0.08 10.67 16 14 O -0.57 -15.93 15.67 5.55 0.09 -15.85 16 15 C -0.10 -1.78 4.43 -29.04 -0.13 -1.90 16 16 C -0.03 -0.55 4.37 -104.62 -0.46 -1.01 16 17 C -0.10 -1.51 9.69 -39.58 -0.38 -1.90 16 18 C -0.13 -1.82 9.98 -39.46 -0.39 -2.21 16 19 C 0.07 0.96 6.72 -39.12 -0.26 0.70 16 20 O -0.49 -6.28 13.29 -34.23 -0.45 -6.73 16 21 C 0.08 1.24 6.72 -39.12 -0.26 0.98 16 22 O -0.49 -6.84 13.29 -34.21 -0.45 -7.30 16 23 C -0.12 -1.94 9.63 -39.46 -0.38 -2.32 16 24 H 0.20 3.23 7.80 -54.10 -0.42 2.81 16 25 H 0.11 2.55 6.34 -51.93 -0.33 2.23 16 26 H 0.06 1.05 6.67 -51.93 -0.35 0.71 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.09 1.54 7.48 -51.93 -0.39 1.16 16 29 H 0.09 1.33 7.35 -51.93 -0.38 0.95 16 30 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.38 2.63 9.06 45.56 0.41 3.05 16 33 H 0.38 3.03 9.06 45.56 0.41 3.44 16 34 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -35.12 307.26 -5.29 -40.41 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -1.83 Total: 10.21 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.45 Total: -7.68 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.21 Total: -33.10 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.82 Total: -29.87 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.12 -5.29 -40.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567960416.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.779 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds