Wall clock time and date at job start Mon Mar 30 2020 01:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48497 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47003 * 300.00382 * 3 2 1 6 6 H 1.48500 * 109.46787 * 60.00231 * 3 2 1 7 7 C 1.38798 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99946 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.72922 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 13 11 10 15 15 C 1.53786 * 113.61109 * 254.13469 * 14 13 11 16 16 C 1.53948 * 87.01916 * 220.05087 * 15 14 13 17 17 C 1.53008 * 113.53721 * 270.81425 * 16 15 14 18 18 O 1.42900 * 109.46911 * 277.49525 * 17 16 15 19 19 C 1.53001 * 113.74642 * 139.94718 * 16 15 14 20 20 O 1.42898 * 109.47097 * 82.39925 * 19 16 15 21 21 C 1.53778 * 113.61069 * 156.53341 * 14 13 11 22 22 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46816 * 60.00508 * 10 9 7 24 24 H 1.08993 * 109.47387 * 300.00147 * 10 9 7 25 25 H 0.97005 * 119.99846 * 359.72750 * 13 11 10 26 26 H 1.08998 * 112.85336 * 25.32968 * 14 13 11 27 27 H 1.09005 * 113.61382 * 334.57254 * 15 14 13 28 28 H 1.09000 * 113.61125 * 105.47172 * 15 14 13 29 29 H 1.08993 * 109.46985 * 37.49583 * 17 16 15 30 30 H 1.09000 * 109.46925 * 157.49728 * 17 16 15 31 31 H 0.96701 * 113.99836 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.47522 * 202.40578 * 19 16 15 33 33 H 1.09009 * 109.46739 * 322.40052 * 19 16 15 34 34 H 0.96708 * 113.99505 * 180.02562 * 20 19 16 35 35 H 1.09001 * 113.61193 * 254.52393 * 21 14 13 36 36 H 1.08999 * 113.61777 * 25.34109 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8917 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7911 -5.5023 0.0045 13 7 2.8441 -6.3432 -0.0022 14 6 2.3303 -7.7151 0.0042 15 6 2.4809 -8.4229 1.3611 16 6 2.8622 -9.6866 0.5690 17 6 1.6614 -10.5559 0.1902 18 8 1.3099 -11.3904 1.2957 19 6 4.0011 -10.4896 1.2007 20 8 3.4773 -11.3289 2.2318 21 6 3.3223 -8.7469 -0.5580 22 1 -0.4850 0.8401 0.0004 23 1 3.1251 -3.7318 0.8875 24 1 3.1238 -3.7310 -0.8924 25 1 3.8009 -6.1836 -0.0068 26 1 1.3298 -7.7945 -0.4210 27 1 3.2933 -8.0285 1.9716 28 1 1.5443 -8.5170 1.9107 29 1 0.8164 -9.9167 -0.0656 30 1 1.9191 -11.1779 -0.6670 31 1 0.5548 -11.9703 1.1263 32 1 4.4782 -11.1053 0.4383 33 1 4.7351 -9.8055 1.6269 34 1 4.1453 -11.8679 2.6774 35 1 3.0641 -9.1023 -1.5556 36 1 4.3651 -8.4407 -0.4746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586224263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:06 Heat of formation + Delta-G solvation = -116.866950 kcal Electronic energy + Delta-G solvation = -18842.640327 eV Core-core repulsion = 15646.876590 eV Total energy + Delta-G solvation = -3195.763738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52383 -38.60374 -36.32294 -36.09745 -33.30347 -32.42443 -29.64830 -27.78343 -26.17762 -25.98900 -25.47985 -22.10039 -20.37187 -18.78245 -17.84728 -17.64572 -17.03986 -16.45063 -16.25214 -15.51147 -15.09998 -14.80770 -14.76100 -14.20422 -13.97380 -13.69553 -13.11787 -12.87763 -12.66948 -12.62588 -12.35504 -11.85554 -11.71218 -11.26797 -11.06974 -11.01634 -10.79916 -10.74664 -10.57696 -9.99745 -9.91088 -9.79241 -9.36596 -9.07426 -8.82912 -8.22589 -6.49491 -6.21510 -3.91900 3.04709 3.07461 3.21715 3.28548 3.33334 3.67830 3.74550 4.06884 4.20555 4.25625 4.65908 4.69920 4.86297 4.93623 5.10424 5.13742 5.15849 5.19385 5.28929 5.38972 5.45162 5.50815 5.57657 5.72854 5.88464 5.91500 6.01200 6.13547 6.15986 6.67594 7.55722 7.60096 7.60622 7.72673 8.35674 8.62433 9.23919 10.85990 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.050521 B = 0.003018 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.091521 B = 9274.795698 C = 9510.958628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.728 5.728 14 C 0.126 3.874 15 C -0.133 4.133 16 C -0.081 4.081 17 C 0.102 3.898 18 O -0.541 6.541 19 C 0.099 3.901 20 O -0.540 6.540 21 C -0.131 4.131 22 H 0.268 0.732 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.398 0.602 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.367 0.633 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.365 0.635 35 H 0.079 0.921 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.976 -22.022 -0.158 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.381 5.381 14 C 0.020 3.980 15 C -0.172 4.172 16 C -0.082 4.082 17 C 0.024 3.976 18 O -0.344 6.344 19 C 0.021 3.979 20 O -0.343 6.343 21 C -0.169 4.169 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.232 0.768 26 H 0.132 0.868 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.213 0.787 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.210 0.790 35 H 0.098 0.902 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.741 -21.621 -0.077 22.965 hybrid contribution 2.591 0.863 -0.183 2.737 sum 10.332 -20.758 -0.259 23.188 Atomic orbital electron populations 1.70033 1.05949 1.27335 1.46960 1.25002 0.95037 0.99053 0.94559 0.86108 0.79565 0.81865 0.77891 1.19628 1.20580 1.20565 1.22909 0.94934 0.91655 1.58808 0.90890 1.85408 1.04969 0.96347 1.96707 1.23539 1.06565 0.95451 1.04907 1.20356 0.86610 0.86360 0.74794 1.90696 1.15406 1.85592 1.47439 1.45981 1.09712 1.05106 1.77351 1.22427 0.98838 0.80115 0.96613 1.23532 1.02942 0.93682 0.97076 1.21712 0.95457 0.93721 0.97263 1.21772 0.95137 0.92121 0.88584 1.86766 1.53108 1.56285 1.38248 1.21930 0.93870 0.92292 0.89830 1.86817 1.36998 1.58720 1.51783 1.23368 1.00298 0.95162 0.98066 0.92242 0.89217 0.89228 0.76778 0.86788 0.89671 0.90445 0.93385 0.93971 0.78749 0.94257 0.93945 0.79046 0.90234 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 11 C 0.53 9.98 7.85 -10.98 -0.09 9.89 16 12 O -0.52 -11.84 15.48 5.56 0.09 -11.75 16 13 N -0.73 -9.69 5.36 -53.02 -0.28 -9.97 16 14 C 0.13 1.49 3.86 -67.12 -0.26 1.23 16 15 C -0.13 -1.55 7.01 -25.83 -0.18 -1.73 16 16 C -0.08 -0.76 1.08 -153.60 -0.17 -0.93 16 17 C 0.10 0.96 6.39 37.16 0.24 1.20 16 18 O -0.54 -5.68 11.11 -58.79 -0.65 -6.33 16 19 C 0.10 0.85 6.52 37.16 0.24 1.09 16 20 O -0.54 -5.38 11.11 -58.79 -0.65 -6.04 16 21 C -0.13 -1.08 6.98 -25.92 -0.18 -1.27 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 24 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 25 H 0.40 4.04 8.71 -40.82 -0.36 3.68 16 26 H 0.11 1.57 7.02 -51.93 -0.36 1.20 16 27 H 0.08 0.95 7.98 -51.93 -0.41 0.54 16 28 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 29 H 0.05 0.46 7.34 -51.93 -0.38 0.08 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.37 2.32 9.12 45.56 0.42 2.73 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.04 0.32 7.96 -51.92 -0.41 -0.09 16 34 H 0.36 2.05 9.12 45.56 0.42 2.47 16 35 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -37.07 318.77 -6.77 -43.84 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.59 Total: 4.84 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 0.03 Total: -6.42 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.45 Total: -35.50 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -1.22 Total: -24.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -37.07 -6.77 -43.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586224263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.025 kcal (2) G-P(sol) polarization free energy of solvation -37.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds