Wall clock time and date at job start Mon Mar 30 2020 01:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86804 * 119.99972 * 2 1 4 4 H 1.48503 * 109.46919 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46847 * 119.99850 * 3 2 1 6 6 H 1.48501 * 109.47154 * 239.99880 * 3 2 1 7 7 C 1.40042 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00328 * 4.98764 * 7 2 1 9 9 C 1.46377 * 120.00028 * 184.98556 * 7 2 1 10 10 O 1.21690 * 119.99941 * 4.97696 * 9 7 2 11 11 N 1.34776 * 120.00146 * 184.96973 * 9 7 2 12 12 C 1.46686 * 121.33807 * 354.29206 * 11 9 7 13 13 C 1.50399 * 109.90296 * 224.30340 * 12 11 9 14 14 C 1.38842 * 117.82186 * 169.32014 * 13 12 11 15 15 C 1.37962 * 120.50156 * 179.05009 * 14 13 12 16 16 C 1.38269 * 119.71860 * 0.03391 * 15 14 13 17 17 C 1.37912 * 119.82496 * 0.23196 * 16 15 14 18 18 C 1.37669 * 122.32464 * 348.82087 * 13 12 11 19 19 C 1.50600 * 122.85863 * 1.23483 * 18 13 12 20 20 H 1.09006 * 109.15930 * 100.16080 * 19 18 13 21 21 C 1.50693 * 109.20260 * 219.47614 * 19 18 13 22 22 O 1.20823 * 119.99884 * 95.88133 * 21 19 18 23 23 O 1.34231 * 120.00180 * 275.88131 * 21 19 18 24 24 C 1.47233 * 121.33455 * 174.57054 * 11 9 7 25 25 H 0.96993 * 120.00042 * 174.98990 * 1 2 3 26 26 H 1.09002 * 109.43291 * 344.45716 * 12 11 9 27 27 H 1.08995 * 109.43368 * 104.32142 * 12 11 9 28 28 H 1.07991 * 119.75115 * 359.04153 * 14 13 12 29 29 H 1.08001 * 120.14244 * 180.02562 * 15 14 13 30 30 H 1.07994 * 120.08927 * 180.20903 * 16 15 14 31 31 H 1.08000 * 119.70490 * 179.97438 * 17 16 15 32 32 H 0.96698 * 116.99517 * 179.97438 * 23 21 19 33 33 H 1.09000 * 109.77329 * 235.36499 * 24 11 9 34 34 H 1.08999 * 109.77622 * 356.11430 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 1.2757 2.7465 -0.0006 5 1 3.0944 1.6964 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0069 -1.2128 0.0005 8 1 1.4700 -2.1464 -0.0804 9 6 3.4666 -1.2152 0.1107 10 8 4.0647 -0.1712 0.2927 11 7 4.1480 -2.3737 0.0107 12 6 3.4530 -3.6619 -0.0845 13 6 4.1124 -4.6674 0.8189 14 6 3.4587 -5.8736 1.0323 15 6 4.0229 -6.8433 1.8352 16 6 5.2483 -6.6113 2.4322 17 6 5.8958 -5.4114 2.2253 18 6 5.3284 -4.4313 1.4196 19 6 6.0881 -3.1424 1.2479 20 1 5.9261 -2.5124 2.1226 21 6 7.5585 -3.4467 1.1219 22 8 8.0646 -3.5401 0.0287 23 8 8.3062 -3.6140 2.2240 24 6 5.6201 -2.3974 -0.0013 25 1 -0.4850 -0.8368 -0.0734 26 1 2.4121 -3.5353 0.2135 27 1 3.4940 -4.0210 -1.1127 28 1 2.5013 -6.0540 0.5664 29 1 3.5095 -7.7797 1.9970 30 1 5.6970 -7.3675 3.0591 31 1 6.8527 -5.2320 2.6928 32 1 9.2444 -3.8081 2.0927 33 1 5.9733 -2.9151 -0.8932 34 1 6.0055 -1.3779 0.0102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605290.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:05 Heat of formation + Delta-G solvation = -135.260789 kcal Electronic energy + Delta-G solvation = -21260.525581 eV Core-core repulsion = 17928.520275 eV Total energy + Delta-G solvation = -3332.005306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11706 -40.64059 -39.63889 -37.38102 -36.73472 -35.16582 -34.34705 -32.27988 -30.75988 -28.57003 -26.76631 -25.77525 -23.84239 -22.47838 -22.09718 -20.61989 -19.39881 -19.18277 -18.23449 -17.81263 -17.53757 -16.69258 -16.57386 -16.19891 -16.04979 -15.42914 -15.22330 -14.73206 -14.68565 -14.38885 -14.18806 -14.09194 -13.86129 -13.42615 -13.21685 -12.75174 -12.66363 -12.54875 -12.37369 -12.04585 -11.92999 -11.75489 -11.25113 -11.19302 -10.14118 -9.84546 -9.66448 -9.48162 -9.22998 -7.15914 0.26616 0.36639 1.01687 1.41060 1.53740 1.80454 1.95883 2.15646 2.33892 2.58400 2.76961 3.20486 3.42862 3.52086 3.73886 3.98105 4.05880 4.15027 4.32096 4.39736 4.44690 4.50453 4.60531 4.63126 4.75784 4.96454 5.05166 5.18847 5.42774 5.46224 5.53308 5.53696 5.57097 5.72232 5.96552 6.01996 6.61353 6.87432 6.90020 7.85376 8.10700 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.006432 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.154330 B = 4352.133677 C = 5406.480144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.033 3.967 3 Si 1.156 2.844 4 H -0.306 1.306 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.607 4.607 8 H 0.080 0.920 9 C 0.552 3.448 10 O -0.639 6.639 11 N -0.631 5.631 12 C 0.157 3.843 13 C -0.095 4.095 14 C -0.120 4.120 15 C -0.109 4.109 16 C -0.119 4.119 17 C -0.127 4.127 18 C -0.091 4.091 19 C -0.053 4.053 20 H 0.109 0.891 21 C 0.509 3.491 22 O -0.535 6.535 23 O -0.501 6.501 24 C 0.132 3.868 25 H 0.280 0.720 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.431 0.569 33 H 0.079 0.921 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.116 -15.621 5.120 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.182 4.182 3 Si 0.988 3.012 4 H -0.237 1.237 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.643 4.643 8 H 0.098 0.902 9 C 0.362 3.638 10 O -0.534 6.534 11 N -0.363 5.363 12 C 0.034 3.966 13 C -0.096 4.096 14 C -0.139 4.139 15 C -0.127 4.127 16 C -0.136 4.136 17 C -0.145 4.145 18 C -0.091 4.091 19 C -0.073 4.073 20 H 0.127 0.873 21 C 0.352 3.648 22 O -0.424 6.424 23 O -0.315 6.315 24 C 0.008 3.992 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.097 0.903 28 H 0.160 0.840 29 H 0.175 0.825 30 H 0.173 0.827 31 H 0.159 0.841 32 H 0.294 0.706 33 H 0.097 0.903 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.880 -13.514 5.020 18.061 hybrid contribution 0.545 -1.692 -0.293 1.801 sum 11.425 -15.206 4.727 19.598 Atomic orbital electron populations 1.70659 1.07667 1.32312 1.36382 1.27707 0.95705 1.06521 0.88317 0.82015 0.70835 0.70244 0.78086 1.23650 1.22395 1.22434 1.22284 0.90574 0.96506 1.54935 0.90169 1.18428 0.88709 0.81432 0.75254 1.90121 1.70950 1.31939 1.60365 1.47610 1.04947 1.06468 1.77266 1.20370 0.96792 0.81079 0.98373 1.19935 0.94867 0.96389 0.98362 1.21298 1.00674 0.92292 0.99607 1.21506 0.95645 0.99703 0.95850 1.21441 0.95450 0.96916 0.99814 1.21561 1.01250 0.93809 0.97891 1.19020 0.95299 0.94313 1.00482 1.20131 0.87661 0.97198 1.02298 0.87278 1.22736 0.89079 0.71260 0.81765 1.90702 1.74259 1.48061 1.29410 1.84519 1.28568 1.82181 1.36238 1.21160 0.81524 1.00751 0.95786 0.90921 0.88927 0.90274 0.84034 0.82501 0.82655 0.84143 0.70605 0.90267 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.59 13.65 21.83 0.30 -47.29 16 2 C 0.03 1.87 5.52 85.30 0.47 2.34 16 3 Si 1.16 60.57 25.98 68.60 1.78 62.35 16 4 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 5 H -0.30 -16.13 6.79 99.48 0.68 -15.45 16 6 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 7 C -0.61 -33.62 9.25 24.83 0.23 -33.39 16 8 H 0.08 4.28 6.10 -2.91 -0.02 4.26 16 9 C 0.55 29.49 7.48 86.36 0.65 30.14 16 10 O -0.64 -36.94 11.56 -4.32 -0.05 -36.99 16 11 N -0.63 -27.60 2.94 -829.85 -2.44 -30.04 16 12 C 0.16 5.67 5.98 85.50 0.51 6.18 16 13 C -0.09 -2.93 5.81 -19.95 -0.12 -3.04 16 14 C -0.12 -2.92 9.62 22.35 0.22 -2.71 16 15 C -0.11 -2.10 10.05 22.21 0.22 -1.88 16 16 C -0.12 -2.27 10.05 22.20 0.22 -2.05 16 17 C -0.13 -3.04 9.03 22.37 0.20 -2.83 16 18 C -0.09 -2.73 5.48 -19.85 -0.11 -2.84 16 19 C -0.05 -1.69 2.89 -12.39 -0.04 -1.72 16 20 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 21 C 0.51 13.99 6.54 71.23 0.47 14.45 16 22 O -0.53 -17.35 16.59 21.97 0.36 -16.98 16 23 O -0.50 -9.40 11.91 -51.43 -0.61 -10.01 16 24 C 0.13 5.07 5.48 86.17 0.47 5.55 16 25 H 0.28 15.15 8.72 -92.71 -0.81 14.34 16 26 H 0.09 3.56 5.71 -2.39 -0.01 3.55 16 27 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.14 2.90 8.05 -2.92 -0.02 2.88 16 29 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.14 2.88 6.02 -2.91 -0.02 2.86 16 32 H 0.43 3.73 9.10 -74.06 -0.67 3.05 16 33 H 0.08 2.95 7.41 -2.39 -0.02 2.93 16 34 H 0.08 3.34 7.10 -2.39 -0.02 3.32 16 Total: -1.00 -71.47 287.41 3.15 -68.32 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 0.41 Total: 2.44 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 3.40 Total: 8.21 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -2.14 Total: -77.33 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -0.30 Total: -63.98 kcal Atomic # 14 Polarization: 60.57 SS G_CDS: 1.78 Total: 62.35 kcal Total: -71.47 3.15 -68.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605290.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.942 kcal (2) G-P(sol) polarization free energy of solvation -71.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds