Wall clock time and date at job start Mon Mar 30 2020 01:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86796 * 120.00383 * 2 1 4 4 H 1.48493 * 109.47042 * 270.00302 * 3 2 1 5 5 H 1.48505 * 109.47047 * 30.00063 * 3 2 1 6 6 H 1.48501 * 109.47326 * 149.99960 * 3 2 1 7 7 C 1.40049 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00077 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99726 * 7.95047 * 9 7 2 11 11 N 1.34780 * 120.00225 * 187.95714 * 9 7 2 12 12 C 1.46680 * 121.33390 * 5.07123 * 11 9 7 13 13 C 1.50804 * 109.67474 * 135.56514 * 12 11 9 14 14 C 1.38833 * 117.80593 * 191.52733 * 13 12 11 15 15 C 1.37964 * 120.50211 * 180.49823 * 14 13 12 16 16 C 1.38264 * 119.71900 * 0.07358 * 15 14 13 17 17 C 1.37902 * 119.82708 * 359.73478 * 16 15 14 18 18 C 1.37673 * 122.34603 * 11.60968 * 13 12 11 19 19 C 1.50596 * 122.85692 * 358.47065 * 18 13 12 20 20 C 1.47226 * 121.33171 * 185.05630 * 11 9 7 21 21 H 1.09002 * 109.76621 * 124.61851 * 20 11 9 22 22 C 1.50697 * 109.77374 * 3.83161 * 20 11 9 23 23 O 1.20827 * 119.99860 * 286.17482 * 22 20 11 24 24 O 1.34223 * 120.00308 * 106.17987 * 22 20 11 25 25 H 0.96998 * 120.00021 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.43322 * 15.50456 * 12 11 9 27 27 H 1.08997 * 109.43586 * 255.63266 * 12 11 9 28 28 H 1.07994 * 119.74998 * 0.47556 * 14 13 12 29 29 H 1.08002 * 120.13614 * 180.02562 * 15 14 13 30 30 H 1.08000 * 120.08566 * 179.70935 * 16 15 14 31 31 H 1.08002 * 119.71031 * 179.97438 * 17 16 15 32 32 H 1.09005 * 109.19720 * 140.55162 * 19 18 13 33 33 H 1.09005 * 109.20057 * 259.88299 * 19 18 13 34 34 H 0.96700 * 117.00269 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4882 2.0463 -1.4000 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0668 -2.4855 -0.1459 11 7 1.9392 -3.6422 0.1605 12 6 3.3775 -3.6651 0.4475 13 6 3.6609 -4.6624 1.5426 14 6 4.9240 -4.6501 2.1187 15 6 5.2466 -5.5449 3.1180 16 6 4.3049 -6.4616 3.5474 17 6 3.0487 -6.4721 2.9787 18 6 2.7188 -5.5679 1.9762 19 6 1.3196 -5.6199 1.4217 20 6 1.2500 -4.9390 0.0558 21 1 1.7443 -5.5599 -0.6914 22 6 -0.1897 -4.7213 -0.3326 23 8 -0.9754 -4.2898 0.4776 24 8 -0.5993 -5.0068 -1.5785 25 1 -0.4850 0.8400 0.0004 26 1 3.6993 -2.6740 0.7672 27 1 3.9224 -3.9499 -0.4525 28 1 5.6597 -3.9349 1.7818 29 1 6.2309 -5.5298 3.5623 30 1 4.5526 -7.1679 4.3260 31 1 2.3146 -7.1893 3.3153 32 1 1.0131 -6.6609 1.3194 33 1 0.6425 -5.1129 2.1092 34 1 -1.5320 -4.8510 -1.7806 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:37 Heat of formation + Delta-G solvation = -89.012340 kcal Electronic energy + Delta-G solvation = -21562.467649 eV Core-core repulsion = 18232.467827 eV Total energy + Delta-G solvation = -3329.999822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23014 -38.96240 -37.26998 -35.14426 -34.83205 -32.66638 -32.54359 -30.76950 -29.52794 -26.46791 -24.92622 -24.56594 -22.02006 -21.17548 -20.63515 -18.59604 -17.46051 -16.68180 -16.40098 -15.82371 -15.47076 -15.02164 -14.71038 -14.51970 -14.21052 -13.91792 -13.53636 -13.20407 -12.87995 -12.57374 -12.38541 -12.16900 -11.87184 -11.62768 -11.32403 -11.10523 -11.05023 -10.82558 -10.75720 -10.52693 -10.38259 -10.21565 -9.43166 -8.94617 -8.58754 -8.32196 -7.61814 -7.48651 -6.28633 -4.76049 1.55354 1.56929 3.07777 3.12064 3.17816 3.20310 3.75718 3.94372 4.01006 4.36505 4.47453 4.97203 5.03052 5.13570 5.21250 5.31226 5.44731 5.62222 5.68000 5.78388 5.78972 6.02789 6.11694 6.16508 6.18908 6.28138 6.44511 6.64266 6.66126 6.86263 7.19348 7.26594 7.34257 7.47033 7.90058 8.17352 8.87770 8.94777 9.20248 10.41090 10.61948 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.007636 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.050462 B = 3666.139528 C = 5072.817749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.552 3.448 10 O -0.541 6.541 11 N -0.632 5.632 12 C 0.163 3.837 13 C -0.083 4.083 14 C -0.115 4.115 15 C -0.126 4.126 16 C -0.128 4.128 17 C -0.121 4.121 18 C -0.062 4.062 19 C -0.086 4.086 20 C 0.165 3.835 21 H 0.083 0.917 22 C 0.496 3.504 23 O -0.487 6.487 24 O -0.529 6.529 25 H 0.271 0.729 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -10.519 2.497 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.092 0.908 9 C 0.359 3.641 10 O -0.423 6.423 11 N -0.374 5.374 12 C 0.039 3.961 13 C -0.084 4.084 14 C -0.134 4.134 15 C -0.144 4.144 16 C -0.146 4.146 17 C -0.139 4.139 18 C -0.062 4.062 19 C -0.124 4.124 20 C 0.059 3.941 21 H 0.101 0.899 22 C 0.337 3.663 23 O -0.372 6.372 24 O -0.341 6.341 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 7.745 -10.318 2.736 13.188 hybrid contribution -0.010 0.902 -0.005 0.902 sum 7.735 -9.415 2.731 12.487 Atomic orbital electron populations 1.70002 1.07082 1.27629 1.34237 1.25738 0.94673 1.00413 0.92545 0.86331 0.80137 0.81191 0.78932 1.19605 1.20386 1.18767 1.20859 0.93560 0.88658 1.54396 0.90763 1.18462 0.87126 0.81927 0.76555 1.90717 1.13842 1.83174 1.54544 1.48444 1.07757 1.03231 1.77932 1.20338 0.82857 0.98738 0.94136 1.20206 0.93536 0.96599 0.98102 1.21048 0.96026 0.99292 0.96992 1.20997 0.99283 0.96281 0.97840 1.20957 0.93836 0.99442 1.00328 1.21109 0.96810 0.99156 0.96837 1.19406 0.94817 0.95319 0.96676 1.20760 0.94446 1.00654 0.96567 1.20170 0.88537 0.88972 0.96451 0.89917 1.22253 0.90669 0.73694 0.79696 1.90671 1.55943 1.38348 1.52207 1.84407 1.34460 1.81306 1.33928 0.91854 0.87397 0.91850 0.85890 0.86355 0.86483 0.86390 0.90355 0.88726 0.74071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.65 11.86 55.55 0.66 -22.00 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.76 29.56 -169.99 -5.02 14.73 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.54 -14.75 8.69 -35.63 -0.31 -15.06 16 8 H 0.07 1.82 6.11 -52.49 -0.32 1.50 16 9 C 0.55 15.50 7.53 -12.98 -0.10 15.40 16 10 O -0.54 -17.08 10.65 -20.05 -0.21 -17.29 16 11 N -0.63 -14.30 2.93 -169.81 -0.50 -14.80 16 12 C 0.16 2.98 5.97 -5.05 -0.03 2.95 16 13 C -0.08 -1.37 5.82 -104.56 -0.61 -1.97 16 14 C -0.12 -1.58 9.62 -39.46 -0.38 -1.96 16 15 C -0.13 -1.53 10.05 -39.67 -0.40 -1.93 16 16 C -0.13 -1.55 10.04 -39.69 -0.40 -1.95 16 17 C -0.12 -1.65 9.59 -39.43 -0.38 -2.03 16 18 C -0.06 -1.00 5.76 -104.60 -0.60 -1.61 16 19 C -0.09 -1.49 5.15 -28.05 -0.14 -1.64 16 20 C 0.16 3.29 3.34 -68.80 -0.23 3.06 16 21 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 22 C 0.50 11.14 5.18 36.00 0.19 11.33 16 23 O -0.49 -12.81 14.77 -26.99 -0.40 -13.20 16 24 O -0.53 -10.25 13.42 -39.59 -0.53 -10.78 16 25 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 26 H 0.11 2.04 5.84 -51.93 -0.30 1.74 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.12 1.43 8.05 -52.49 -0.42 1.01 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.36 8.05 -52.49 -0.42 0.94 16 32 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.09 1.89 7.49 -51.93 -0.39 1.50 16 34 H 0.40 6.27 9.10 45.56 0.41 6.69 16 LS Contribution 290.22 15.07 4.37 4.37 Total: -1.00 -36.22 290.22 -7.81 -44.03 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -2.69 Total: 8.07 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -3.49 Total: 6.87 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.16 Total: -36.80 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.14 Total: -41.28 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.22 -7.81 -44.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.979 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds