Wall clock time and date at job start Mon Mar 30 2020 01:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48493 * 109.47238 * 239.99901 * 3 2 1 5 5 H 1.48500 * 109.46765 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47077 * 119.99616 * 3 2 1 7 7 C 1.38949 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00109 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00037 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00314 * 180.02562 * 10 9 7 13 13 C 1.50704 * 115.55758 * 34.31157 * 12 10 9 14 14 O 1.20824 * 120.00111 * 145.69315 * 13 12 10 15 15 O 1.34233 * 120.00157 * 325.68769 * 13 12 10 16 16 C 1.52995 * 117.49789 * 248.62911 * 12 10 9 17 17 C 1.52997 * 117.50408 * 180.02562 * 12 10 9 18 18 H 1.08991 * 117.52113 * 214.97262 * 17 12 10 19 19 C 1.50702 * 117.49469 * 359.97438 * 17 12 10 20 20 C 1.38234 * 119.99895 * 59.74196 * 19 17 12 21 21 C 1.38240 * 120.00062 * 180.32314 * 20 19 17 22 22 C 1.38234 * 119.99686 * 359.92348 * 21 20 19 23 23 C 1.38234 * 120.00244 * 0.07174 * 22 21 20 24 24 C 1.38230 * 119.99864 * 359.95693 * 23 22 21 25 25 H 0.97000 * 119.99729 * 359.97438 * 1 2 3 26 26 H 0.96997 * 119.99856 * 0.02562 * 9 7 2 27 27 H 0.96695 * 116.99851 * 179.97438 * 15 13 12 28 28 H 1.09004 * 117.50061 * 145.02084 * 16 12 10 29 29 H 1.08996 * 117.52445 * 359.97438 * 16 12 10 30 30 H 1.08001 * 120.00279 * 0.27436 * 20 19 17 31 31 H 1.07997 * 119.99831 * 179.97438 * 21 20 19 32 32 H 1.07999 * 119.99747 * 180.02562 * 22 21 20 33 33 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 34 34 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 6 -0.0536 -4.8645 -0.7680 14 8 -0.4087 -5.8605 -1.3525 15 8 -0.8146 -3.7593 -0.8016 16 6 1.3184 -5.7223 1.2625 17 6 2.0658 -6.1534 -0.0005 18 1 1.6688 -7.0037 -0.5548 19 6 3.5670 -6.0220 0.0001 20 6 4.2025 -5.3605 1.0342 21 6 5.5791 -5.2341 1.0314 22 6 6.3203 -5.7706 -0.0048 23 6 5.6848 -6.4321 -1.0389 24 6 4.3082 -6.5580 -1.0364 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 -1.6377 -3.8083 -1.3067 28 1 0.4292 -6.2889 1.5392 29 1 1.9126 -5.3443 2.0943 30 1 3.6235 -4.9417 1.8441 31 1 6.0755 -4.7169 1.8391 32 1 7.3958 -5.6722 -0.0069 33 1 6.2639 -6.8509 -1.8487 34 1 3.8116 -7.0745 -1.8445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074820.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:35 Heat of formation + Delta-G solvation = -83.611389 kcal Electronic energy + Delta-G solvation = -21302.670603 eV Core-core repulsion = 17972.904983 eV Total energy + Delta-G solvation = -3329.765620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.12424 -40.46827 -39.36372 -37.77617 -36.76509 -35.77975 -33.27207 -31.70816 -31.39552 -27.94370 -26.11087 -24.79607 -23.33286 -23.09024 -21.68332 -20.52923 -20.01676 -19.10251 -18.49802 -17.67408 -16.89484 -16.74307 -16.17740 -15.87946 -15.84462 -15.52708 -15.18424 -14.89185 -14.70475 -14.08398 -13.91182 -13.66773 -13.28433 -12.95996 -12.92224 -12.66295 -12.45218 -12.31942 -12.14370 -11.95919 -11.86492 -11.66456 -11.50852 -11.38332 -10.47573 -9.98989 -9.52364 -8.99762 -8.44576 -5.92175 0.47591 0.75719 0.95806 1.38886 1.41811 1.52342 1.79132 2.04312 2.28637 2.63965 2.97795 3.13970 3.27468 3.51290 3.76118 3.92246 4.07627 4.15913 4.29627 4.36140 4.40445 4.61716 4.69229 4.82834 4.86944 5.05416 5.27738 5.33417 5.41804 5.46002 5.72754 5.79368 5.89270 6.00040 6.32490 6.62546 6.89831 7.11980 7.61330 8.14977 8.71690 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.007195 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.975676 B = 3890.771903 C = 5277.005264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.083 0.917 9 N -0.556 5.556 10 C 0.464 3.536 11 O -0.588 6.588 12 C -0.177 4.177 13 C 0.530 3.470 14 O -0.529 6.529 15 O -0.503 6.503 16 C -0.103 4.103 17 C -0.043 4.043 18 H 0.143 0.857 19 C -0.063 4.063 20 C -0.049 4.049 21 C -0.149 4.149 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.122 4.122 25 H 0.278 0.722 26 H 0.405 0.595 27 H 0.431 0.569 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 -10.802 1.442 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.101 0.899 9 N -0.195 5.195 10 C 0.250 3.750 11 O -0.474 6.474 12 C -0.181 4.181 13 C 0.373 3.627 14 O -0.420 6.420 15 O -0.318 6.318 16 C -0.141 4.141 17 C -0.061 4.061 18 H 0.160 0.840 19 C -0.064 4.064 20 C -0.068 4.068 21 C -0.167 4.167 22 C -0.142 4.142 23 C -0.160 4.160 24 C -0.140 4.140 25 H 0.087 0.913 26 H 0.244 0.756 27 H 0.295 0.705 28 H 0.160 0.840 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.108 -10.838 1.495 11.373 hybrid contribution -0.962 1.245 -0.514 1.655 sum 2.146 -9.593 0.981 9.879 Atomic orbital electron populations 1.69708 1.06811 1.29278 1.49318 1.26056 0.96532 1.02352 0.96176 0.85022 0.77814 0.76753 0.78948 1.19904 1.19493 1.19511 1.19689 0.92797 0.83804 1.50005 0.89948 1.42199 1.10439 1.04134 1.62760 1.19027 0.87549 0.83945 0.84514 1.90591 1.13616 1.86393 1.56814 1.21129 0.94248 0.94972 1.07797 1.21821 0.83740 0.80041 0.77067 1.90650 1.72643 1.35023 1.43671 1.84456 1.37873 1.39144 1.70278 1.23477 1.03509 0.97155 0.89918 1.21257 0.90588 0.93146 1.01148 0.83957 1.18892 0.92172 0.99452 0.95840 1.20775 0.94647 0.93682 0.97649 1.21186 0.94056 1.01295 1.00147 1.21325 1.00526 0.98066 0.94286 1.21244 0.94318 1.01008 0.99423 1.21082 0.94714 1.00634 0.97586 0.91298 0.75608 0.70518 0.84017 0.86435 0.87749 0.85892 0.84426 0.84133 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.78 13.05 21.66 0.28 -48.49 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 3 Si 0.99 42.46 29.55 68.60 2.03 44.49 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.56 -28.75 5.10 -306.97 -1.57 -30.31 16 10 C 0.46 21.97 7.19 87.66 0.63 22.60 16 11 O -0.59 -30.22 11.26 -3.09 -0.03 -30.25 16 12 C -0.18 -6.51 2.57 -53.67 -0.14 -6.65 16 13 C 0.53 18.57 7.86 71.24 0.56 19.13 16 14 O -0.53 -18.81 17.02 21.97 0.37 -18.44 16 15 O -0.50 -16.66 10.51 -51.45 -0.54 -17.20 16 16 C -0.10 -2.94 9.28 30.58 0.28 -2.65 16 17 C -0.04 -1.36 5.55 -11.55 -0.06 -1.43 16 18 H 0.14 4.01 7.67 -2.39 -0.02 3.99 16 19 C -0.06 -2.18 4.38 -19.87 -0.09 -2.27 16 20 C -0.05 -1.77 6.15 22.27 0.14 -1.63 16 21 C -0.15 -4.90 10.05 22.27 0.22 -4.68 16 22 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 23 C -0.14 -4.07 10.05 22.27 0.22 -3.85 16 24 C -0.12 -3.84 9.74 22.27 0.22 -3.62 16 25 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 26 H 0.40 20.24 5.06 -92.71 -0.47 19.77 16 27 H 0.43 9.52 9.10 -74.06 -0.67 8.84 16 28 H 0.14 3.07 8.14 -2.38 -0.02 3.05 16 29 H 0.12 3.32 6.18 -2.39 -0.01 3.30 16 30 H 0.10 3.79 5.78 -2.91 -0.02 3.77 16 31 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -68.51 295.47 4.06 -64.45 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: 0.02 Total: 42.21 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 3.49 Total: -6.46 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -1.28 Total: -78.81 kcal Atomic # 8 Polarization: -65.69 SS G_CDS: -0.20 Total: -65.89 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -68.51 4.06 -64.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074820.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.158 kcal (2) G-P(sol) polarization free energy of solvation -68.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds