Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99929 * 2 1 4 4 H 1.48507 * 109.47217 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46793 * 120.00016 * 3 2 1 6 6 H 1.48494 * 109.47491 * 240.00320 * 3 2 1 7 7 C 1.37870 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00377 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47215 * 300.00165 * 9 7 2 11 11 O 1.42899 * 109.46836 * 59.99704 * 9 7 2 12 12 C 1.53001 * 109.47600 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47181 * 174.03002 * 12 9 7 14 14 C 1.46463 * 111.00199 * 306.46274 * 13 12 9 15 15 C 1.53257 * 109.86161 * 197.76380 * 14 13 12 16 16 S 1.81898 * 108.50583 * 297.99732 * 15 14 13 17 17 C 1.81904 * 101.91386 * 51.30348 * 16 15 14 18 18 C 1.46470 * 110.99792 * 72.44311 * 13 12 9 19 19 H 1.09003 * 109.40820 * 282.34922 * 18 13 12 20 20 C 1.53002 * 109.40540 * 42.11517 * 18 13 12 21 21 C 1.50707 * 109.46906 * 184.32870 * 20 18 13 22 22 O 1.20825 * 119.99802 * 6.00419 * 21 20 18 23 23 O 1.34227 * 119.99627 * 186.01297 * 21 20 18 24 24 H 0.97002 * 120.00287 * 180.02562 * 1 2 3 25 25 H 0.96702 * 114.00149 * 60.01068 * 11 9 7 26 26 H 1.08997 * 109.46994 * 294.03734 * 12 9 7 27 27 H 1.09002 * 109.47002 * 54.03213 * 12 9 7 28 28 H 1.08996 * 109.40883 * 317.88046 * 14 13 12 29 29 H 1.09002 * 109.40728 * 77.64731 * 14 13 12 30 30 H 1.08994 * 109.63124 * 178.28581 * 15 14 13 31 31 H 1.09004 * 109.79006 * 57.79471 * 15 14 13 32 32 H 1.08996 * 109.63431 * 188.98957 * 17 16 15 33 33 H 1.09000 * 109.63396 * 68.39986 * 17 16 15 34 34 H 1.08997 * 109.46728 * 304.32235 * 20 18 13 35 35 H 1.08991 * 109.47383 * 64.32551 * 20 18 13 36 36 H 0.96700 * 116.99804 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4291 -2.5745 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5165 -4.9293 0.1435 14 6 0.6404 -4.9006 1.3169 15 6 0.2412 -6.3288 1.7037 16 16 -0.6874 -7.0628 0.3225 17 6 0.4221 -6.7496 -1.0845 18 6 0.7964 -5.2635 -1.0874 19 1 -0.1103 -4.6619 -1.1513 20 6 1.6881 -4.9662 -2.2947 21 6 0.9124 -5.2085 -3.5638 22 8 -0.2649 -5.4751 -3.5107 23 8 1.5294 -5.1283 -4.7532 24 1 -0.4851 -0.8400 0.0004 25 1 0.9208 -2.5291 -1.9984 26 1 2.7996 -3.6662 -0.9391 27 1 2.9402 -3.5460 0.8312 28 1 1.1657 -4.4333 2.1498 29 1 -0.2554 -4.3241 1.0860 30 1 -0.3857 -6.3051 2.5950 31 1 1.1347 -6.9214 1.9001 32 1 -0.0866 -7.0009 -2.0151 33 1 1.3234 -7.3540 -0.9818 34 1 2.0118 -3.9260 -2.2597 35 1 2.5604 -5.6192 -2.2717 36 1 0.9906 -5.2921 -5.5392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -134.646433 kcal Electronic energy + Delta-G solvation = -20784.974035 eV Core-core repulsion = 17588.439321 eV Total energy + Delta-G solvation = -3196.534714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46561 -38.80159 -36.15863 -35.42263 -32.92356 -32.19213 -30.76503 -28.41191 -27.20103 -23.97518 -23.46525 -22.03868 -21.23848 -19.18874 -18.09380 -17.50008 -16.84766 -16.76967 -15.71621 -15.37963 -14.87614 -14.82836 -14.45234 -13.87175 -13.72137 -13.42722 -13.17195 -12.72984 -12.63620 -12.37191 -12.22679 -11.97946 -11.58296 -11.36604 -11.29230 -10.91898 -10.82869 -10.48072 -10.36261 -10.18037 -10.08093 -9.81902 -9.49091 -8.60335 -8.52418 -7.62659 -7.42737 -6.43206 -4.30054 1.97264 2.27474 2.69081 3.02505 3.36255 3.36621 3.56310 4.17855 4.44162 4.82206 4.85344 5.07740 5.21633 5.31091 5.34449 5.42097 5.46736 5.53233 5.60318 5.73680 5.85727 5.92637 5.96635 6.08483 6.22520 6.41667 6.55078 6.56366 7.12504 7.24152 7.44538 7.88020 7.94473 8.23474 8.75204 8.87146 9.56033 10.95104 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.006802 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.248436 B = 4115.652314 C = 5132.830198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.036 3.964 3 Si 1.065 2.935 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.653 4.653 8 H 0.051 0.949 9 C 0.179 3.821 10 H 0.055 0.945 11 O -0.576 6.576 12 C 0.025 3.975 13 N -0.545 5.545 14 C 0.057 3.943 15 C -0.073 4.073 16 S -0.276 6.276 17 C -0.072 4.072 18 C 0.096 3.904 19 H 0.095 0.905 20 C -0.115 4.115 21 C 0.481 3.519 22 O -0.507 6.507 23 O -0.519 6.519 24 H 0.284 0.716 25 H 0.347 0.653 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -11.865 -3.311 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.174 4.174 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.691 4.691 8 H 0.069 0.931 9 C 0.121 3.879 10 H 0.072 0.928 11 O -0.382 6.382 12 C -0.101 4.101 13 N -0.270 5.270 14 C -0.073 4.073 15 C -0.222 4.222 16 S -0.049 6.049 17 C -0.221 4.221 18 C -0.014 4.014 19 H 0.112 0.888 20 C -0.154 4.154 21 C 0.323 3.677 22 O -0.395 6.395 23 O -0.331 6.331 24 H 0.096 0.904 25 H 0.193 0.807 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.124 0.876 36 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.941 -11.207 -2.354 11.823 hybrid contribution 1.041 -0.480 -0.992 1.516 sum 3.982 -11.687 -3.346 12.792 Atomic orbital electron populations 1.70652 1.06941 1.32286 1.42297 1.25788 0.96461 1.02541 0.92609 0.83616 0.74984 0.75528 0.76548 1.20744 1.21416 1.21390 1.22377 0.94382 0.92423 1.59952 0.93098 1.20239 0.89234 0.92784 0.85657 0.92754 1.86581 1.39525 1.96216 1.15852 1.23111 0.97371 0.87231 1.02426 1.61567 1.28774 1.34430 1.02185 1.22153 0.97078 0.94348 0.93672 1.23534 1.02105 0.98849 0.97704 1.86766 1.34309 1.78311 1.05498 1.23705 1.00683 0.98906 0.98807 1.21587 0.97376 0.94431 0.87963 0.88761 1.21739 0.99239 1.06263 0.88138 1.23464 0.86506 0.72503 0.85265 1.90726 1.17257 1.43959 1.87535 1.84546 1.47623 1.83758 1.17169 0.90426 0.80747 0.90681 0.90453 0.89746 0.92409 0.87917 0.89469 0.87074 0.90004 0.85849 0.87597 0.73423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.53 55.43 0.75 -25.57 16 2 C 0.04 0.98 5.40 -17.82 -0.10 0.88 16 3 Si 1.07 24.16 29.90 -169.99 -5.08 19.07 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.65 -17.00 8.76 -34.44 -0.30 -17.30 16 8 H 0.05 1.30 7.74 -52.48 -0.41 0.89 16 9 C 0.18 4.08 2.09 -27.88 -0.06 4.02 16 10 H 0.05 1.37 6.25 -51.93 -0.32 1.05 16 11 O -0.58 -13.30 9.09 -35.23 -0.32 -13.62 16 12 C 0.03 0.46 4.71 -3.83 -0.02 0.45 16 13 N -0.55 -8.86 4.50 -227.03 -1.02 -9.88 16 14 C 0.06 0.93 4.19 -3.93 -0.02 0.91 16 15 C -0.07 -1.02 6.69 37.29 0.25 -0.77 16 16 S -0.28 -4.31 22.40 -107.50 -2.41 -6.72 16 17 C -0.07 -1.08 5.71 37.29 0.21 -0.86 16 18 C 0.10 1.54 0.86 -67.81 -0.06 1.48 16 19 H 0.09 1.88 6.01 -51.93 -0.31 1.57 16 20 C -0.11 -1.59 4.12 -27.88 -0.11 -1.70 16 21 C 0.48 6.67 7.92 36.01 0.29 6.96 16 22 O -0.51 -8.54 14.91 -18.75 -0.28 -8.81 16 23 O -0.52 -5.69 13.42 -39.25 -0.53 -6.22 16 24 H 0.28 8.58 6.47 -40.82 -0.26 8.32 16 25 H 0.35 7.33 7.01 45.56 0.32 7.65 16 26 H 0.08 1.27 5.29 -51.93 -0.27 1.00 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.33 7.96 -51.93 -0.41 0.92 16 29 H 0.06 1.10 6.97 -51.93 -0.36 0.74 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.11 1.71 6.06 -51.93 -0.31 1.39 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.12 1.82 3.85 -51.93 -0.20 1.62 16 35 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.41 2.73 9.10 45.56 0.41 3.15 16 LS Contribution 292.96 15.07 4.41 4.41 Total: -1.00 -31.26 292.96 -7.44 -38.70 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -3.05 Total: 14.58 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 0.08 Total: -5.94 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.27 Total: -35.45 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.13 Total: -28.65 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.08 Total: 19.07 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -2.41 Total: -6.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.26 -7.44 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.950 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds