Wall clock time and date at job start Mon Mar 30 2020 01:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99929 * 2 1 4 4 H 1.48507 * 109.47217 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46793 * 120.00016 * 3 2 1 6 6 H 1.48494 * 109.47491 * 240.00320 * 3 2 1 7 7 C 1.37870 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00377 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47215 * 300.00165 * 9 7 2 11 11 O 1.42899 * 109.46836 * 59.99704 * 9 7 2 12 12 C 1.53001 * 109.47600 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47181 * 174.03002 * 12 9 7 14 14 C 1.46463 * 111.00199 * 306.46274 * 13 12 9 15 15 C 1.53257 * 109.86161 * 197.76380 * 14 13 12 16 16 S 1.81898 * 108.50583 * 297.99732 * 15 14 13 17 17 C 1.81904 * 101.91386 * 51.30348 * 16 15 14 18 18 C 1.46470 * 110.99792 * 72.44311 * 13 12 9 19 19 H 1.09003 * 109.40820 * 282.34922 * 18 13 12 20 20 C 1.53002 * 109.40540 * 42.11517 * 18 13 12 21 21 C 1.50707 * 109.46906 * 184.32870 * 20 18 13 22 22 O 1.20825 * 119.99802 * 6.00419 * 21 20 18 23 23 O 1.34227 * 119.99627 * 186.01297 * 21 20 18 24 24 H 0.97002 * 120.00287 * 180.02562 * 1 2 3 25 25 H 0.96702 * 114.00149 * 60.01068 * 11 9 7 26 26 H 1.08997 * 109.46994 * 294.03734 * 12 9 7 27 27 H 1.09002 * 109.47002 * 54.03213 * 12 9 7 28 28 H 1.08996 * 109.40883 * 317.88046 * 14 13 12 29 29 H 1.09002 * 109.40728 * 77.64731 * 14 13 12 30 30 H 1.08994 * 109.63124 * 178.28581 * 15 14 13 31 31 H 1.09004 * 109.79006 * 57.79471 * 15 14 13 32 32 H 1.08996 * 109.63431 * 188.98957 * 17 16 15 33 33 H 1.09000 * 109.63396 * 68.39986 * 17 16 15 34 34 H 1.08997 * 109.46728 * 304.32235 * 20 18 13 35 35 H 1.08991 * 109.47383 * 64.32551 * 20 18 13 36 36 H 0.96700 * 116.99804 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4291 -2.5745 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5165 -4.9293 0.1435 14 6 0.6404 -4.9006 1.3169 15 6 0.2412 -6.3288 1.7037 16 16 -0.6874 -7.0628 0.3225 17 6 0.4221 -6.7496 -1.0845 18 6 0.7964 -5.2635 -1.0874 19 1 -0.1103 -4.6619 -1.1513 20 6 1.6881 -4.9662 -2.2947 21 6 0.9124 -5.2085 -3.5638 22 8 -0.2649 -5.4751 -3.5107 23 8 1.5294 -5.1283 -4.7532 24 1 -0.4851 -0.8400 0.0004 25 1 0.9208 -2.5291 -1.9984 26 1 2.7996 -3.6662 -0.9391 27 1 2.9402 -3.5460 0.8312 28 1 1.1657 -4.4333 2.1498 29 1 -0.2554 -4.3241 1.0860 30 1 -0.3857 -6.3051 2.5950 31 1 1.1347 -6.9214 1.9001 32 1 -0.0866 -7.0009 -2.0151 33 1 1.3234 -7.3540 -0.9818 34 1 2.0118 -3.9260 -2.2597 35 1 2.5604 -5.6192 -2.2717 36 1 0.9906 -5.2921 -5.5392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:38 Heat of formation + Delta-G solvation = -159.094625 kcal Electronic energy + Delta-G solvation = -20786.034188 eV Core-core repulsion = 17588.439321 eV Total energy + Delta-G solvation = -3197.594867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63711 -40.17673 -37.38466 -36.98244 -34.41137 -33.99891 -32.21192 -29.58186 -28.89804 -25.75770 -24.71651 -23.59429 -22.54068 -20.54266 -19.47828 -19.15636 -18.11385 -17.94446 -17.05876 -16.84708 -16.37068 -16.18550 -15.78856 -15.69193 -15.06835 -14.82217 -14.70399 -14.27382 -13.91631 -13.79395 -13.57624 -13.22495 -12.96658 -12.79142 -12.61860 -12.46102 -12.39858 -11.97427 -11.86058 -11.80477 -11.55407 -11.40924 -10.73114 -10.63709 -10.41974 -9.19491 -8.73195 -8.55195 -6.46208 0.77935 1.18282 1.50990 1.53509 1.59959 1.78764 1.99810 2.55808 2.88091 3.16918 3.58292 3.66083 3.80633 3.93134 4.12128 4.15628 4.21652 4.33875 4.39219 4.44924 4.49523 4.57956 4.67648 4.72149 4.86079 5.03671 5.09572 5.36108 5.61074 5.68417 5.95594 6.02567 6.16199 6.56188 6.99227 7.07536 7.49660 8.76729 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.017999 B = 0.006802 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.248436 B = 4115.652314 C = 5132.830198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.112 2.888 4 H -0.293 1.293 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.655 4.655 8 H 0.058 0.942 9 C 0.181 3.819 10 H 0.022 0.978 11 O -0.585 6.585 12 C 0.039 3.961 13 N -0.528 5.528 14 C 0.057 3.943 15 C -0.058 4.058 16 S -0.311 6.311 17 C -0.060 4.060 18 C 0.101 3.899 19 H 0.051 0.949 20 C -0.111 4.111 21 C 0.489 3.511 22 O -0.543 6.543 23 O -0.509 6.509 24 H 0.266 0.734 25 H 0.354 0.646 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.020 0.980 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.812 -12.704 -3.736 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.934 3.066 4 H -0.219 1.219 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.694 4.694 8 H 0.077 0.923 9 C 0.123 3.877 10 H 0.040 0.960 11 O -0.391 6.391 12 C -0.089 4.089 13 N -0.252 5.252 14 C -0.072 4.072 15 C -0.206 4.206 16 S -0.084 6.084 17 C -0.209 4.209 18 C -0.009 4.009 19 H 0.069 0.931 20 C -0.150 4.150 21 C 0.332 3.668 22 O -0.433 6.433 23 O -0.322 6.322 24 H 0.076 0.924 25 H 0.201 0.799 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.038 0.962 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 5.380 -12.073 -2.806 13.512 hybrid contribution 0.284 -0.252 -0.904 0.981 sum 5.664 -12.325 -3.710 14.062 Atomic orbital electron populations 1.70797 1.08233 1.31121 1.45765 1.27216 0.96393 1.06547 0.91861 0.83014 0.74111 0.71444 0.78039 1.21856 1.19501 1.19209 1.22833 0.94950 0.93625 1.57952 0.92349 1.20130 0.89229 0.93820 0.84510 0.96018 1.86568 1.39965 1.96315 1.16287 1.22906 0.96219 0.86106 1.03625 1.61660 1.28482 1.32638 1.02372 1.22143 0.95549 0.95671 0.93864 1.23520 1.02875 0.96930 0.97256 1.86915 1.36061 1.78340 1.07121 1.23641 1.01086 0.98069 0.98061 1.21441 0.96096 0.94627 0.88766 0.93119 1.21669 0.99674 1.06401 0.87294 1.23370 0.85799 0.71612 0.86031 1.90729 1.18724 1.45773 1.88104 1.84490 1.47561 1.83011 1.17171 0.92400 0.79897 0.88709 0.90118 0.89289 0.96151 0.86270 0.87425 0.87559 0.87766 0.86607 0.84499 0.71078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.18 13.53 21.44 0.29 -55.89 16 2 C -0.02 -0.99 5.40 84.65 0.46 -0.53 16 3 Si 1.11 48.06 29.90 68.60 2.05 50.11 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.66 -33.87 8.76 25.60 0.22 -33.65 16 8 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.18 8.37 2.09 29.85 0.06 8.43 16 10 H 0.02 1.16 6.25 -2.39 -0.01 1.14 16 11 O -0.59 -27.71 9.09 -148.98 -1.35 -29.07 16 12 C 0.04 1.36 4.71 86.30 0.41 1.77 16 13 N -0.53 -16.50 4.50 -872.20 -3.93 -20.43 16 14 C 0.06 1.85 4.19 86.47 0.36 2.22 16 15 C -0.06 -1.51 6.69 72.07 0.48 -1.03 16 16 S -0.31 -9.52 22.40 -56.49 -1.27 -10.79 16 17 C -0.06 -1.71 5.71 72.07 0.41 -1.29 16 18 C 0.10 3.15 0.86 45.08 0.04 3.19 16 19 H 0.05 2.08 6.01 -2.39 -0.01 2.06 16 20 C -0.11 -2.86 4.12 29.85 0.12 -2.74 16 21 C 0.49 12.82 7.92 71.24 0.56 13.38 16 22 O -0.54 -18.09 14.91 21.97 0.33 -17.76 16 23 O -0.51 -9.87 13.42 -51.39 -0.69 -10.56 16 24 H 0.27 16.78 6.47 -92.71 -0.60 16.18 16 25 H 0.35 15.13 7.01 -74.06 -0.52 14.61 16 26 H 0.09 2.97 5.29 -2.39 -0.01 2.96 16 27 H 0.08 2.80 8.14 -2.39 -0.02 2.79 16 28 H 0.09 2.77 7.96 -2.39 -0.02 2.75 16 29 H 0.02 0.81 6.97 -2.39 -0.02 0.79 16 30 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.11 3.18 6.06 -2.39 -0.01 3.16 16 33 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.12 3.19 3.85 -2.39 -0.01 3.19 16 35 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.43 4.69 9.10 -74.06 -0.67 4.01 16 Total: -1.00 -68.83 292.96 -1.33 -70.16 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.11 Total: 34.48 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 3.13 Total: -10.27 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -3.64 Total: -76.31 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -1.72 Total: -57.39 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.05 Total: 50.11 kcal Atomic # 16 Polarization: -9.52 SS G_CDS: -1.27 Total: -10.79 kcal Total: -68.83 -1.33 -70.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.931 kcal (2) G-P(sol) polarization free energy of solvation -68.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds