Wall clock time and date at job start Mon Mar 30 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47308 * 270.00150 * 3 2 1 5 5 H 1.48501 * 109.47187 * 30.00438 * 3 2 1 6 6 H 1.48509 * 109.47190 * 150.00059 * 3 2 1 7 7 C 1.37878 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99876 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99730 * 179.97438 * 7 2 1 10 10 H 1.08992 * 109.47568 * 299.99649 * 9 7 2 11 11 O 1.42904 * 109.47205 * 60.00150 * 9 7 2 12 12 C 1.53007 * 109.46863 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47230 * 177.37049 * 12 9 7 14 14 C 1.43444 * 111.00095 * 164.28332 * 13 12 9 15 15 C 1.52285 * 104.90473 * 224.81586 * 14 13 12 16 16 S 1.74914 * 114.46286 * 267.14575 * 15 14 13 17 17 C 1.84973 * 101.42517 * 61.56807 * 16 15 14 18 18 C 1.50609 * 108.94184 * 293.26639 * 17 16 15 19 19 H 1.09004 * 108.03341 * 327.41527 * 18 17 16 20 20 C 1.50704 * 108.03995 * 210.93925 * 18 17 16 21 21 O 1.20828 * 119.99625 * 239.99854 * 20 18 17 22 22 O 1.34228 * 120.00102 * 59.99777 * 20 18 17 23 23 C 1.47214 * 111.00358 * 288.76647 * 13 12 9 24 24 H 0.97004 * 120.00103 * 359.97438 * 1 2 3 25 25 H 0.96704 * 113.99948 * 64.96320 * 11 9 7 26 26 H 1.09003 * 109.46586 * 57.37165 * 12 9 7 27 27 H 1.08995 * 109.47171 * 297.37850 * 12 9 7 28 28 H 1.09002 * 110.34513 * 343.66276 * 14 13 12 29 29 H 1.09005 * 110.34664 * 105.81083 * 14 13 12 30 30 H 1.08998 * 108.47946 * 28.43761 * 15 14 13 31 31 H 1.09001 * 108.48388 * 145.85567 * 15 14 13 32 32 H 1.09003 * 109.56001 * 53.10560 * 17 16 15 33 33 H 1.09001 * 109.56135 * 173.42707 * 17 16 15 34 34 H 0.96696 * 116.99498 * 179.97438 * 22 20 18 35 35 H 1.09011 * 107.84294 * 315.36188 * 23 13 12 36 36 H 1.08995 * 107.84944 * 71.31273 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8746 -0.6799 -0.8911 11 8 3.9884 -0.5205 1.1657 12 6 4.0217 -2.6364 -0.0010 13 7 5.4893 -2.6369 -0.0651 14 6 6.0192 -3.9203 0.2948 15 6 7.1764 -3.6162 1.2368 16 16 8.7343 -3.4869 0.4521 17 6 8.4527 -2.0580 -0.6883 18 6 7.4478 -2.4593 -1.7359 19 1 7.5773 -3.5226 -1.9380 20 6 7.7664 -1.7054 -3.0013 21 8 6.9461 -0.9610 -3.4838 22 8 8.9615 -1.8610 -3.5924 23 6 5.9595 -2.2151 -1.3949 24 1 -0.4850 0.8401 0.0004 25 1 3.7674 -0.9662 1.9949 26 1 3.6200 -3.1638 -0.8663 27 1 3.6977 -3.1363 0.9117 28 1 5.2607 -4.5138 0.8055 29 1 6.3765 -4.4449 -0.5914 30 1 6.9679 -2.6764 1.7481 31 1 7.2306 -4.4075 1.9844 32 1 8.0701 -1.2089 -0.1219 33 1 9.3918 -1.7844 -1.1694 34 1 9.1196 -1.3568 -4.4022 35 1 5.3565 -2.7319 -2.1417 36 1 5.7647 -1.1474 -1.4950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:36 Heat of formation + Delta-G solvation = -124.920695 kcal Electronic energy + Delta-G solvation = -20251.327645 eV Core-core repulsion = 17055.214671 eV Total energy + Delta-G solvation = -3196.112974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66768 -38.53181 -36.33543 -35.74525 -33.66722 -32.22881 -31.29239 -28.42250 -26.55357 -24.81575 -24.30148 -21.99878 -20.64424 -19.50026 -18.35343 -17.66430 -17.22535 -16.26023 -15.84981 -15.65795 -15.06608 -14.83490 -14.49713 -14.35081 -13.91395 -13.64418 -13.43376 -12.87502 -12.73295 -12.56834 -12.35276 -11.95255 -11.70363 -11.48995 -11.26802 -11.09200 -10.90006 -10.83268 -10.50032 -10.37837 -10.01361 -9.78653 -9.06073 -8.60803 -8.30345 -7.97880 -7.75269 -6.12449 -4.23966 1.62522 2.05154 2.41808 2.82732 3.42187 3.50959 3.78240 4.09883 4.29511 4.56037 4.59271 4.94423 4.99955 5.08295 5.21729 5.23627 5.29343 5.32431 5.51995 5.67503 5.74321 5.83865 5.87539 6.03432 6.13533 6.26591 6.31649 6.48779 7.14939 7.25668 7.48651 7.64929 7.70478 8.29066 8.82507 9.08693 9.53178 10.98092 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.006002 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.794839 B = 4664.318354 C = 5446.368964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.085 3.915 3 Si 0.871 3.129 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.216 1.216 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.201 3.799 10 H 0.053 0.947 11 O -0.569 6.569 12 C 0.042 3.958 13 N -0.526 5.526 14 C 0.051 3.949 15 C -0.114 4.114 16 S -0.231 6.231 17 C -0.065 4.065 18 C -0.074 4.074 19 H 0.113 0.887 20 C 0.483 3.517 21 O -0.500 6.500 22 O -0.516 6.516 23 C 0.061 3.939 24 H 0.265 0.735 25 H 0.351 0.649 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.411 0.589 35 H 0.044 0.956 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.499 -7.295 -2.113 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.119 4.119 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.138 1.138 7 C -0.604 4.604 8 H 0.089 0.911 9 C 0.143 3.857 10 H 0.071 0.929 11 O -0.374 6.374 12 C -0.085 4.085 13 N -0.250 5.250 14 C -0.081 4.081 15 C -0.264 4.264 16 S -0.002 6.002 17 C -0.213 4.213 18 C -0.096 4.096 19 H 0.130 0.870 20 C 0.323 3.677 21 O -0.387 6.387 22 O -0.328 6.328 23 C -0.067 4.067 24 H 0.074 0.926 25 H 0.197 0.803 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.270 0.730 35 H 0.062 0.938 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.366 -7.100 -1.785 20.703 hybrid contribution -1.468 0.823 -1.027 1.972 sum 17.897 -6.278 -2.812 19.174 Atomic orbital electron populations 1.69959 1.06802 1.27476 1.48865 1.24963 0.94574 0.99994 0.92378 0.87021 0.83110 0.81762 0.78389 1.21462 1.22288 1.13791 1.21488 0.89886 0.94760 1.54266 0.91149 1.19719 0.93044 0.86852 0.86070 0.92888 1.86711 1.81426 1.53161 1.16123 1.23052 0.83035 1.01526 1.00873 1.61469 1.11222 1.26149 1.26189 1.21839 0.96648 0.91417 0.98161 1.22821 0.95144 1.07069 1.01346 1.86227 1.19375 1.43258 1.51384 1.23302 1.01185 0.99368 0.97396 1.21261 0.96854 1.01513 0.89939 0.86959 1.23297 0.78986 0.79970 0.85489 1.90789 1.48138 1.35702 1.64049 1.84507 1.36844 1.67921 1.43523 1.22244 0.90053 1.04097 0.90285 0.92599 0.80326 0.94311 0.90633 0.90226 0.92714 0.87898 0.88417 0.87899 0.86942 0.73011 0.93810 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 22.24 26.99 -169.99 -4.59 17.66 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.22 -5.38 5.31 56.52 0.30 -5.08 16 7 C -0.57 -15.57 9.37 -34.44 -0.32 -15.89 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 9 C 0.20 4.59 2.32 -27.88 -0.06 4.52 16 10 H 0.05 1.30 6.28 -51.93 -0.33 0.97 16 11 O -0.57 -12.70 10.06 -35.23 -0.35 -13.06 16 12 C 0.04 0.76 4.37 -3.82 -0.02 0.75 16 13 N -0.53 -8.06 3.84 -236.59 -0.91 -8.97 16 14 C 0.05 0.63 5.48 -6.02 -0.03 0.59 16 15 C -0.11 -1.32 5.60 36.79 0.21 -1.11 16 16 S -0.23 -2.60 21.78 -107.50 -2.34 -4.94 16 17 C -0.06 -0.72 5.83 35.96 0.21 -0.51 16 18 C -0.07 -0.89 1.95 -92.11 -0.18 -1.06 16 19 H 0.11 1.22 6.79 -51.93 -0.35 0.87 16 20 C 0.48 5.89 7.44 36.01 0.27 6.16 16 21 O -0.50 -8.00 16.27 -18.75 -0.31 -8.31 16 22 O -0.52 -4.52 12.84 -39.25 -0.50 -5.03 16 23 C 0.06 0.93 3.75 -2.80 -0.01 0.92 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 25 H 0.35 6.90 9.02 45.56 0.41 7.31 16 26 H 0.04 0.73 7.79 -51.93 -0.40 0.32 16 27 H 0.08 1.32 7.63 -51.93 -0.40 0.93 16 28 H 0.08 0.94 7.32 -51.93 -0.38 0.56 16 29 H 0.05 0.64 6.34 -51.93 -0.33 0.31 16 30 H 0.10 1.35 7.81 -48.91 -0.38 0.97 16 31 H 0.10 0.99 8.14 -48.90 -0.40 0.60 16 32 H 0.10 1.26 8.06 -51.93 -0.42 0.84 16 33 H 0.11 1.08 7.28 -51.93 -0.38 0.71 16 34 H 0.41 1.91 9.10 45.56 0.41 2.32 16 35 H 0.04 0.69 7.72 -51.92 -0.40 0.29 16 36 H 0.09 1.67 6.24 -51.93 -0.32 1.35 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -32.94 298.66 -7.09 -40.03 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.32 Total: 8.00 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.04 Total: -3.26 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.14 Total: -35.59 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -1.16 Total: -26.39 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.59 Total: 17.66 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.34 Total: -4.94 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.94 -7.09 -40.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.894 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds