Wall clock time and date at job start Mon Mar 30 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47308 * 270.00150 * 3 2 1 5 5 H 1.48501 * 109.47187 * 30.00438 * 3 2 1 6 6 H 1.48509 * 109.47190 * 150.00059 * 3 2 1 7 7 C 1.37878 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99876 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99730 * 179.97438 * 7 2 1 10 10 H 1.08992 * 109.47568 * 299.99649 * 9 7 2 11 11 O 1.42904 * 109.47205 * 60.00150 * 9 7 2 12 12 C 1.53007 * 109.46863 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47230 * 177.37049 * 12 9 7 14 14 C 1.43444 * 111.00095 * 164.28332 * 13 12 9 15 15 C 1.52285 * 104.90473 * 224.81586 * 14 13 12 16 16 S 1.74914 * 114.46286 * 267.14575 * 15 14 13 17 17 C 1.84973 * 101.42517 * 61.56807 * 16 15 14 18 18 C 1.50609 * 108.94184 * 293.26639 * 17 16 15 19 19 H 1.09004 * 108.03341 * 327.41527 * 18 17 16 20 20 C 1.50704 * 108.03995 * 210.93925 * 18 17 16 21 21 O 1.20828 * 119.99625 * 239.99854 * 20 18 17 22 22 O 1.34228 * 120.00102 * 59.99777 * 20 18 17 23 23 C 1.47214 * 111.00358 * 288.76647 * 13 12 9 24 24 H 0.97004 * 120.00103 * 359.97438 * 1 2 3 25 25 H 0.96704 * 113.99948 * 64.96320 * 11 9 7 26 26 H 1.09003 * 109.46586 * 57.37165 * 12 9 7 27 27 H 1.08995 * 109.47171 * 297.37850 * 12 9 7 28 28 H 1.09002 * 110.34513 * 343.66276 * 14 13 12 29 29 H 1.09005 * 110.34664 * 105.81083 * 14 13 12 30 30 H 1.08998 * 108.47946 * 28.43761 * 15 14 13 31 31 H 1.09001 * 108.48388 * 145.85567 * 15 14 13 32 32 H 1.09003 * 109.56001 * 53.10560 * 17 16 15 33 33 H 1.09001 * 109.56135 * 173.42707 * 17 16 15 34 34 H 0.96696 * 116.99498 * 179.97438 * 22 20 18 35 35 H 1.09011 * 107.84294 * 315.36188 * 23 13 12 36 36 H 1.08995 * 107.84944 * 71.31273 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8746 -0.6799 -0.8911 11 8 3.9884 -0.5205 1.1657 12 6 4.0217 -2.6364 -0.0010 13 7 5.4893 -2.6369 -0.0651 14 6 6.0192 -3.9203 0.2948 15 6 7.1764 -3.6162 1.2368 16 16 8.7343 -3.4869 0.4521 17 6 8.4527 -2.0580 -0.6883 18 6 7.4478 -2.4593 -1.7359 19 1 7.5773 -3.5226 -1.9380 20 6 7.7664 -1.7054 -3.0013 21 8 6.9461 -0.9610 -3.4838 22 8 8.9615 -1.8610 -3.5924 23 6 5.9595 -2.2151 -1.3949 24 1 -0.4850 0.8401 0.0004 25 1 3.7674 -0.9662 1.9949 26 1 3.6200 -3.1638 -0.8663 27 1 3.6977 -3.1363 0.9117 28 1 5.2607 -4.5138 0.8055 29 1 6.3765 -4.4449 -0.5914 30 1 6.9679 -2.6764 1.7481 31 1 7.2306 -4.4075 1.9844 32 1 8.0701 -1.2089 -0.1219 33 1 9.3918 -1.7844 -1.1694 34 1 9.1196 -1.3568 -4.4022 35 1 5.3565 -2.7319 -2.1417 36 1 5.7647 -1.1474 -1.4950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:36 Heat of formation + Delta-G solvation = -151.403498 kcal Electronic energy + Delta-G solvation = -20252.476025 eV Core-core repulsion = 17055.214671 eV Total energy + Delta-G solvation = -3197.261355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.64882 -39.78543 -37.51093 -37.16916 -34.72819 -34.41455 -32.50150 -30.08543 -27.85257 -26.15731 -25.54891 -23.11036 -22.29995 -20.62441 -19.47545 -19.21615 -18.45636 -17.28511 -16.95056 -16.83240 -16.66738 -16.58287 -15.80765 -15.52987 -15.44716 -15.04982 -14.63756 -14.37870 -14.04287 -13.67121 -13.51775 -13.35155 -13.07447 -12.93757 -12.63014 -12.55874 -12.36632 -12.21139 -12.08825 -11.69291 -11.46256 -11.08350 -10.83903 -10.77955 -10.13669 -9.29308 -8.63927 -8.37314 -6.50633 0.73613 1.11280 1.36855 1.41707 1.51770 1.72405 1.94914 2.41969 2.90594 3.01978 3.26270 3.61595 3.97389 4.00006 4.04747 4.13267 4.30648 4.33766 4.36010 4.42197 4.48288 4.62844 4.73648 4.77148 4.88098 4.94473 5.13802 5.44587 5.46430 5.52418 5.95951 6.08261 6.24991 6.61795 6.90421 7.22873 7.39924 8.76781 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.020142 B = 0.006002 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.794839 B = 4664.318354 C = 5446.368964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.032 3.968 3 Si 0.932 3.068 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.205 1.205 7 C -0.564 4.564 8 H 0.041 0.959 9 C 0.209 3.791 10 H 0.037 0.963 11 O -0.572 6.572 12 C 0.055 3.945 13 N -0.526 5.526 14 C 0.051 3.949 15 C -0.111 4.111 16 S -0.220 6.220 17 C -0.062 4.062 18 C -0.066 4.066 19 H 0.131 0.869 20 C 0.494 3.506 21 O -0.545 6.545 22 O -0.501 6.501 23 C 0.065 3.935 24 H 0.266 0.734 25 H 0.365 0.635 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.431 0.569 35 H 0.034 0.966 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.233 -8.044 -1.789 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.168 4.168 3 Si 0.757 3.243 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.127 1.127 7 C -0.602 4.602 8 H 0.059 0.941 9 C 0.151 3.849 10 H 0.055 0.945 11 O -0.379 6.379 12 C -0.072 4.072 13 N -0.250 5.250 14 C -0.080 4.080 15 C -0.260 4.260 16 S 0.009 5.991 17 C -0.210 4.210 18 C -0.088 4.088 19 H 0.148 0.852 20 C 0.335 3.665 21 O -0.435 6.435 22 O -0.314 6.314 23 C -0.063 4.063 24 H 0.075 0.925 25 H 0.213 0.787 26 H 0.049 0.951 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.294 0.706 35 H 0.052 0.948 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.151 -7.873 -1.458 23.553 hybrid contribution -2.268 0.973 -1.146 2.721 sum 19.883 -6.900 -2.604 21.207 Atomic orbital electron populations 1.70072 1.08330 1.28282 1.51146 1.25763 0.95174 1.03339 0.92539 0.86078 0.82185 0.78031 0.77966 1.22017 1.22181 1.12662 1.21870 0.92478 0.93335 1.52509 0.94089 1.19447 0.90064 0.89628 0.85771 0.94489 1.86632 1.81021 1.53608 1.16593 1.22707 0.85205 0.98180 1.01106 1.61358 1.09046 1.28285 1.26316 1.21941 0.97148 0.89985 0.98910 1.22724 0.94976 1.06958 1.01382 1.86235 1.18862 1.42858 1.51138 1.23290 1.01586 0.98998 0.97081 1.21131 0.94789 1.02518 0.90313 0.85151 1.23236 0.79185 0.78891 0.85215 1.90789 1.49728 1.37720 1.65291 1.84453 1.34701 1.67821 1.44471 1.22148 0.92451 1.01828 0.89907 0.92506 0.78731 0.95125 0.89557 0.89292 0.91544 0.89395 0.86577 0.89185 0.85078 0.70616 0.94796 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 2 C 0.03 1.85 5.47 84.65 0.46 2.32 16 3 Si 0.93 46.61 26.99 68.60 1.85 48.47 16 4 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.20 -9.79 5.31 99.48 0.53 -9.26 16 7 C -0.56 -31.50 9.37 25.60 0.24 -31.26 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 9 C 0.21 9.53 2.32 29.85 0.07 9.60 16 10 H 0.04 1.83 6.28 -2.39 -0.02 1.82 16 11 O -0.57 -24.82 10.06 -148.98 -1.50 -26.32 16 12 C 0.06 2.00 4.37 86.31 0.38 2.37 16 13 N -0.53 -15.42 3.84 -902.42 -3.47 -18.89 16 14 C 0.05 1.13 5.48 86.71 0.48 1.60 16 15 C -0.11 -2.24 5.60 71.75 0.40 -1.84 16 16 S -0.22 -4.27 21.78 -56.49 -1.23 -5.50 16 17 C -0.06 -1.21 5.83 71.21 0.41 -0.80 16 18 C -0.07 -1.45 1.95 -11.76 -0.02 -1.47 16 19 H 0.13 2.43 6.79 -2.39 -0.02 2.41 16 20 C 0.49 11.20 7.44 71.24 0.53 11.73 16 21 O -0.55 -17.25 16.27 21.96 0.36 -16.90 16 22 O -0.50 -7.31 12.84 -51.39 -0.66 -7.97 16 23 C 0.06 1.93 3.75 86.80 0.33 2.25 16 24 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.37 13.75 9.02 -74.05 -0.67 13.08 16 26 H 0.03 1.15 7.79 -2.39 -0.02 1.13 16 27 H 0.09 2.91 7.63 -2.39 -0.02 2.89 16 28 H 0.09 1.86 7.32 -2.39 -0.02 1.84 16 29 H 0.07 1.36 6.34 -2.38 -0.02 1.34 16 30 H 0.09 2.10 7.81 -4.31 -0.03 2.07 16 31 H 0.12 1.96 8.14 -4.31 -0.04 1.93 16 32 H 0.09 2.05 8.06 -2.39 -0.02 2.03 16 33 H 0.13 2.10 7.28 -2.39 -0.02 2.08 16 34 H 0.43 2.76 9.10 -74.06 -0.67 2.08 16 35 H 0.03 1.06 7.72 -2.38 -0.02 1.04 16 36 H 0.06 2.16 6.24 -2.39 -0.01 2.15 16 Total: -1.00 -71.57 298.66 -1.51 -73.07 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -0.43 Total: 18.06 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 3.27 Total: -5.49 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -3.17 Total: -77.41 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -1.80 Total: -51.19 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.85 Total: 48.47 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -1.23 Total: -5.50 kcal Total: -71.57 -1.51 -73.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.329 kcal (2) G-P(sol) polarization free energy of solvation -71.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds