Wall clock time and date at job start Mon Mar 30 2020 01:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48499 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47372 * 300.00448 * 3 2 1 6 6 H 1.48501 * 109.46790 * 60.00173 * 3 2 1 7 7 C 1.38796 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00279 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99921 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47241 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47321 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47309 * 179.97438 * 12 11 10 14 14 C 1.48536 * 110.99521 * 69.87619 * 13 12 11 15 15 C 1.54942 * 103.22418 * 159.72350 * 14 13 12 16 16 H 1.08990 * 110.72581 * 80.94382 * 15 14 13 17 17 O 1.42900 * 110.72116 * 204.22764 * 15 14 13 18 18 C 1.54591 * 102.91948 * 322.58184 * 15 14 13 19 19 C 1.47900 * 110.99996 * 187.27152 * 13 12 11 20 20 H 1.08998 * 109.91806 * 333.51013 * 19 13 12 21 21 C 1.50701 * 109.91638 * 94.80709 * 19 13 12 22 22 O 1.20823 * 120.00126 * 359.97438 * 21 19 13 23 23 O 1.34229 * 119.99565 * 179.97438 * 21 19 13 24 24 H 0.97001 * 120.00057 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46997 * 60.00061 * 10 9 7 26 26 H 1.08996 * 109.47047 * 300.00374 * 10 9 7 27 27 H 1.09000 * 109.47023 * 60.00141 * 11 10 9 28 28 H 1.08996 * 109.47457 * 300.00187 * 11 10 9 29 29 H 1.09000 * 109.46930 * 60.00117 * 12 11 10 30 30 H 1.08996 * 109.47035 * 300.00479 * 12 11 10 31 31 H 1.09004 * 110.66813 * 278.15215 * 14 13 12 32 32 H 1.09000 * 110.66721 * 41.28713 * 14 13 12 33 33 H 0.96701 * 113.99812 * 298.54451 * 17 15 14 34 34 H 1.09004 * 110.31236 * 263.04069 * 18 15 14 35 35 H 1.09002 * 110.39345 * 140.91928 * 18 15 14 36 36 H 0.96709 * 116.99591 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3242 0.0001 12 6 3.1513 -6.3077 -0.0005 13 7 2.6362 -7.6834 0.0007 14 6 2.0015 -8.0152 -1.3006 15 6 2.0101 -9.5646 -1.3143 16 1 1.1790 -9.9601 -0.7306 17 8 1.9687 -10.0585 -2.6546 18 6 3.3609 -9.9086 -0.6460 19 6 3.7332 -8.6600 0.1749 20 1 4.6680 -8.2381 -0.1942 21 6 3.8696 -9.0246 1.6308 22 8 3.1334 -8.5273 2.4496 23 8 4.8090 -9.9018 2.0177 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7313 0.8895 26 1 3.1244 -3.7313 -0.8905 27 1 1.3705 -5.4846 -0.8897 28 1 1.3709 -5.4841 0.8903 29 1 3.7605 -6.1475 0.8890 30 1 3.7593 -6.1477 -0.8909 31 1 0.9802 -7.6359 -1.3383 32 1 2.5907 -7.6198 -2.1279 33 1 1.1746 -9.8029 -3.1436 34 1 4.1196 -10.1030 -1.4042 35 1 3.2513 -10.7731 0.0089 36 1 4.8584 -10.1041 2.9621 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:40 Heat of formation + Delta-G solvation = -142.601508 kcal Electronic energy + Delta-G solvation = -18954.982393 eV Core-core repulsion = 15758.102721 eV Total energy + Delta-G solvation = -3196.879672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79832 -39.06041 -36.59806 -36.06118 -33.89254 -32.42115 -30.44986 -29.36480 -25.87020 -25.21960 -23.69176 -21.85859 -20.77260 -20.58597 -18.18392 -17.84764 -17.49368 -16.97504 -16.16546 -15.49836 -15.29534 -14.80282 -14.75809 -14.16305 -13.91591 -13.69510 -13.38554 -13.29692 -12.88241 -12.55592 -12.20150 -11.89880 -11.69418 -11.51363 -11.37294 -11.09757 -11.07447 -10.79452 -10.64755 -10.54725 -10.35348 -10.27726 -9.53971 -9.05796 -8.73217 -8.28825 -6.51489 -6.22047 -3.92050 2.07125 2.60258 3.21426 3.22400 3.30384 3.45206 3.62309 4.05051 4.22439 4.23768 4.27422 4.67534 4.82631 4.96463 5.13412 5.14972 5.16597 5.24281 5.38873 5.44872 5.50519 5.62817 5.67551 5.68566 5.85457 6.02236 6.27860 6.32357 6.49640 6.59323 6.69575 6.85230 7.29130 7.61645 7.78455 8.37705 9.24379 10.86228 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.003409 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.238587 B = 8212.388908 C = 8838.498105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.131 6.131 10 C -0.113 4.113 11 C -0.090 4.090 12 C 0.053 3.947 13 N -0.494 5.494 14 C 0.005 3.995 15 C 0.098 3.902 16 H 0.077 0.923 17 O -0.562 6.562 18 C -0.110 4.110 19 C 0.076 3.924 20 H 0.095 0.905 21 C 0.480 3.520 22 O -0.483 6.483 23 O -0.522 6.522 24 H 0.267 0.733 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.384 0.616 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.377 -21.177 -1.980 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.664 4.664 8 H 0.091 0.909 9 S 0.098 5.902 10 C -0.262 4.262 11 C -0.129 4.129 12 C -0.076 4.076 13 N -0.220 5.220 14 C -0.122 4.122 15 C 0.039 3.961 16 H 0.095 0.905 17 O -0.368 6.368 18 C -0.148 4.148 19 C -0.034 4.034 20 H 0.113 0.887 21 C 0.319 3.681 22 O -0.367 6.367 23 O -0.335 6.335 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.059 -21.294 -1.558 22.194 hybrid contribution 1.999 1.631 -0.042 2.580 sum 8.059 -19.663 -1.600 21.311 Atomic orbital electron populations 1.70035 1.05917 1.27199 1.47378 1.25013 0.95076 0.99081 0.94625 0.86113 0.79642 0.81883 0.77883 1.19629 1.20574 1.20558 1.22739 0.94555 0.90814 1.58323 0.90938 1.84637 1.09434 0.99346 1.96832 1.23230 1.02953 0.97320 1.02731 1.21204 0.96612 0.91671 1.03373 1.22446 0.97787 0.86372 1.00978 1.64228 1.24224 1.02331 1.31173 1.24035 1.01724 0.95897 0.90592 1.22711 0.97662 0.92227 0.83549 0.90465 1.86476 1.47562 1.77582 1.25181 1.22282 0.97693 0.96031 0.98818 1.21841 0.97382 0.95244 0.88957 0.88738 1.23179 0.77085 0.75900 0.91935 1.90762 1.41806 1.50159 1.53994 1.84503 1.55169 1.59725 1.34066 0.92368 0.92107 0.92328 0.91647 0.90429 0.90624 0.94115 0.88459 0.91934 0.76766 0.88704 0.89619 0.73111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.97 9.50 30.94 0.29 -14.67 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.13 -3.47 21.44 -107.50 -2.30 -5.77 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 11 C -0.09 -1.50 5.27 -26.73 -0.14 -1.64 16 12 C 0.05 0.73 4.69 -3.83 -0.02 0.71 16 13 N -0.49 -6.09 4.40 -223.94 -0.99 -7.08 16 14 C 0.01 0.05 5.52 -1.89 -0.01 0.04 16 15 C 0.10 0.86 4.44 -24.87 -0.11 0.75 16 16 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 17 O -0.56 -4.69 13.40 -35.23 -0.47 -5.16 16 18 C -0.11 -0.95 6.31 -25.37 -0.16 -1.11 16 19 C 0.08 0.78 2.97 -67.79 -0.20 0.58 16 20 H 0.09 0.86 7.77 -51.93 -0.40 0.46 16 21 C 0.48 5.44 7.44 36.01 0.27 5.71 16 22 O -0.48 -7.39 17.22 -18.75 -0.32 -7.71 16 23 O -0.52 -4.23 13.40 -39.25 -0.53 -4.75 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 27 H 0.06 1.06 7.25 -51.93 -0.38 0.69 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 30 H 0.04 0.51 7.90 -51.93 -0.41 0.10 16 31 H 0.10 0.99 7.76 -51.93 -0.40 0.58 16 32 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 33 H 0.38 1.73 9.11 45.56 0.42 2.14 16 34 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.09 0.69 7.68 -51.93 -0.40 0.29 16 36 H 0.41 1.70 9.10 45.56 0.41 2.11 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -35.44 320.54 -7.68 -43.12 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -3.65 Total: 1.11 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 0.04 Total: -9.80 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: -0.25 Total: -32.53 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.32 Total: -17.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.30 Total: -5.77 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.44 -7.68 -43.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.486 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds