Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48499 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47372 * 300.00448 * 3 2 1 6 6 H 1.48501 * 109.46790 * 60.00173 * 3 2 1 7 7 C 1.38796 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00279 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99921 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47241 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47321 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47309 * 179.97438 * 12 11 10 14 14 C 1.48536 * 110.99521 * 69.87619 * 13 12 11 15 15 C 1.54942 * 103.22418 * 159.72350 * 14 13 12 16 16 H 1.08990 * 110.72581 * 80.94382 * 15 14 13 17 17 O 1.42900 * 110.72116 * 204.22764 * 15 14 13 18 18 C 1.54591 * 102.91948 * 322.58184 * 15 14 13 19 19 C 1.47900 * 110.99996 * 187.27152 * 13 12 11 20 20 H 1.08998 * 109.91806 * 333.51013 * 19 13 12 21 21 C 1.50701 * 109.91638 * 94.80709 * 19 13 12 22 22 O 1.20823 * 120.00126 * 359.97438 * 21 19 13 23 23 O 1.34229 * 119.99565 * 179.97438 * 21 19 13 24 24 H 0.97001 * 120.00057 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46997 * 60.00061 * 10 9 7 26 26 H 1.08996 * 109.47047 * 300.00374 * 10 9 7 27 27 H 1.09000 * 109.47023 * 60.00141 * 11 10 9 28 28 H 1.08996 * 109.47457 * 300.00187 * 11 10 9 29 29 H 1.09000 * 109.46930 * 60.00117 * 12 11 10 30 30 H 1.08996 * 109.47035 * 300.00479 * 12 11 10 31 31 H 1.09004 * 110.66813 * 278.15215 * 14 13 12 32 32 H 1.09000 * 110.66721 * 41.28713 * 14 13 12 33 33 H 0.96701 * 113.99812 * 298.54451 * 17 15 14 34 34 H 1.09004 * 110.31236 * 263.04069 * 18 15 14 35 35 H 1.09002 * 110.39345 * 140.91928 * 18 15 14 36 36 H 0.96709 * 116.99591 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3242 0.0001 12 6 3.1513 -6.3077 -0.0005 13 7 2.6362 -7.6834 0.0007 14 6 2.0015 -8.0152 -1.3006 15 6 2.0101 -9.5646 -1.3143 16 1 1.1790 -9.9601 -0.7306 17 8 1.9687 -10.0585 -2.6546 18 6 3.3609 -9.9086 -0.6460 19 6 3.7332 -8.6600 0.1749 20 1 4.6680 -8.2381 -0.1942 21 6 3.8696 -9.0246 1.6308 22 8 3.1334 -8.5273 2.4496 23 8 4.8090 -9.9018 2.0177 24 1 -0.4850 0.8400 0.0004 25 1 3.1244 -3.7313 0.8895 26 1 3.1244 -3.7313 -0.8905 27 1 1.3705 -5.4846 -0.8897 28 1 1.3709 -5.4841 0.8903 29 1 3.7605 -6.1475 0.8890 30 1 3.7593 -6.1477 -0.8909 31 1 0.9802 -7.6359 -1.3383 32 1 2.5907 -7.6198 -2.1279 33 1 1.1746 -9.8029 -3.1436 34 1 4.1196 -10.1030 -1.4042 35 1 3.2513 -10.7731 0.0089 36 1 4.8584 -10.1041 2.9621 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = -171.045206 kcal Electronic energy + Delta-G solvation = -18956.215804 eV Core-core repulsion = 15758.102721 eV Total energy + Delta-G solvation = -3198.113083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.64243 -39.87550 -37.36966 -36.91559 -35.05833 -34.60040 -31.49605 -30.15328 -27.87593 -26.54507 -24.67176 -22.82281 -21.84429 -21.41840 -19.57065 -18.97406 -18.56543 -17.84920 -17.04946 -16.90634 -16.53853 -16.36363 -16.00392 -15.51938 -14.96450 -14.73084 -14.52462 -14.28058 -14.13609 -13.60000 -13.29009 -13.15069 -13.06472 -12.91615 -12.79380 -12.53715 -12.44627 -12.30360 -11.82460 -11.66537 -11.51847 -11.37007 -11.16078 -10.95783 -10.33338 -9.62734 -8.67743 -8.38219 -6.14734 1.21632 1.30852 1.38031 1.48895 1.69998 1.89269 2.27331 2.74025 2.96127 3.22879 3.33555 3.52399 3.53463 3.93964 3.98227 4.11975 4.17552 4.27099 4.31494 4.37985 4.46956 4.64683 4.67120 4.74333 4.78688 4.91525 4.99145 5.12750 5.25655 5.39096 5.61874 5.67032 5.79626 6.17516 6.83497 7.04042 7.04946 8.71560 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.003409 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.238587 B = 8212.388908 C = 8838.498105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.197 6.197 10 C -0.088 4.088 11 C -0.077 4.077 12 C 0.065 3.935 13 N -0.513 5.513 14 C 0.005 3.995 15 C 0.105 3.895 16 H 0.078 0.922 17 O -0.570 6.570 18 C -0.105 4.105 19 C 0.074 3.926 20 H 0.112 0.888 21 C 0.486 3.514 22 O -0.531 6.531 23 O -0.510 6.510 24 H 0.272 0.728 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.089 -21.918 -2.697 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.032 5.968 10 C -0.237 4.237 11 C -0.116 4.116 12 C -0.065 4.065 13 N -0.239 5.239 14 C -0.122 4.122 15 C 0.046 3.954 16 H 0.096 0.904 17 O -0.378 6.378 18 C -0.143 4.143 19 C -0.036 4.036 20 H 0.129 0.871 21 C 0.328 3.672 22 O -0.419 6.419 23 O -0.324 6.324 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.251 0.749 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 7.781 -22.072 -2.281 23.515 hybrid contribution 1.487 1.726 0.185 2.285 sum 9.267 -20.347 -2.097 22.456 Atomic orbital electron populations 1.70164 1.07711 1.28512 1.48022 1.26076 0.96036 1.03130 0.93708 0.84952 0.78412 0.76582 0.78329 1.18651 1.19500 1.19743 1.23080 0.94746 0.91991 1.58850 0.90920 1.84656 1.13973 1.01155 1.97027 1.23145 1.00229 0.97432 1.02917 1.21056 0.97690 0.90210 1.02680 1.22202 0.96109 0.86697 1.01452 1.64101 1.25394 1.01846 1.32596 1.24067 1.01313 0.97111 0.89712 1.22593 0.97858 0.91030 0.83957 0.90431 1.86444 1.48882 1.77541 1.24971 1.22282 0.97839 0.95288 0.98870 1.21949 0.97436 0.95508 0.88702 0.87082 1.23400 0.76502 0.75293 0.92039 1.90754 1.43781 1.52116 1.55264 1.84464 1.53695 1.58429 1.35826 0.91938 0.92337 0.91457 0.91177 0.92309 0.91300 0.92433 0.88941 0.91504 0.74924 0.87585 0.88968 0.71018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 2 C 0.02 0.88 5.49 84.86 0.47 1.35 16 3 Si 1.00 44.27 29.55 68.60 2.03 46.30 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.57 9.50 67.95 0.65 -30.93 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 S -0.20 -10.68 21.44 -56.49 -1.21 -11.89 16 10 C -0.09 -3.59 5.67 71.98 0.41 -3.18 16 11 C -0.08 -2.58 5.27 30.59 0.16 -2.42 16 12 C 0.06 1.70 4.69 86.30 0.40 2.10 16 13 N -0.51 -12.02 4.40 -862.41 -3.80 -15.81 16 14 C 0.01 0.10 5.52 86.65 0.48 0.58 16 15 C 0.11 1.65 4.44 31.80 0.14 1.79 16 16 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 17 O -0.57 -8.18 13.40 -148.98 -2.00 -10.18 16 18 C -0.10 -1.55 6.31 31.47 0.20 -1.35 16 19 C 0.07 1.38 2.97 44.31 0.13 1.51 16 20 H 0.11 1.72 7.77 -2.39 -0.02 1.70 16 21 C 0.49 10.34 7.44 71.24 0.53 10.87 16 22 O -0.53 -16.08 17.22 21.97 0.38 -15.70 16 23 O -0.51 -7.15 13.40 -51.41 -0.69 -7.84 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H 0.06 2.40 8.14 -2.40 -0.02 2.38 16 26 H 0.07 2.63 8.14 -2.40 -0.02 2.61 16 27 H 0.07 2.26 7.25 -2.39 -0.02 2.24 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 30 H 0.06 1.31 7.90 -2.39 -0.02 1.29 16 31 H 0.09 1.80 7.76 -2.38 -0.02 1.78 16 32 H 0.07 1.20 7.85 -2.39 -0.02 1.19 16 33 H 0.40 2.76 9.11 -74.06 -0.67 2.08 16 34 H 0.11 1.36 8.07 -2.38 -0.02 1.34 16 35 H 0.09 1.25 7.68 -2.39 -0.02 1.23 16 36 H 0.43 2.68 9.10 -74.05 -0.67 2.01 16 Total: -1.00 -76.70 320.54 -1.68 -78.38 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -0.25 Total: 11.47 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 3.57 Total: -19.68 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -3.51 Total: -70.86 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -2.31 Total: -33.72 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.21 Total: -11.89 kcal Total: -76.70 -1.68 -78.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.660 kcal (2) G-P(sol) polarization free energy of solvation -76.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds