Wall clock time and date at job start Mon Mar 30 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48505 * 109.47098 * 264.93565 * 3 2 1 5 5 H 1.48500 * 109.47356 * 144.93920 * 3 2 1 6 6 H 1.48499 * 109.47308 * 24.93555 * 3 2 1 7 7 C 1.39937 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99909 * 160.63099 * 7 2 1 9 9 C 1.41435 * 119.99727 * 340.63664 * 7 2 1 10 10 C 1.40785 * 120.17916 * 334.08143 * 9 7 2 11 11 C 1.37716 * 120.03666 * 179.74204 * 10 9 7 12 12 C 1.38361 * 120.41450 * 0.51750 * 11 10 9 13 13 C 1.39875 * 120.36068 * 359.76148 * 12 11 10 14 14 C 1.47890 * 120.03014 * 179.97438 * 13 12 11 15 15 O 1.21548 * 120.00280 * 186.26081 * 14 13 12 16 16 N 1.34777 * 119.99624 * 6.26459 * 14 13 12 17 17 C 1.47066 * 136.05633 * 5.57791 * 16 14 13 18 18 C 1.53501 * 87.98327 * 152.84655 * 17 16 14 19 19 C 1.47064 * 136.05483 * 185.20411 * 16 14 13 20 20 H 1.08999 * 113.46697 * 92.37942 * 19 16 14 21 21 C 1.50702 * 113.47171 * 321.93731 * 19 16 14 22 22 O 1.20830 * 119.99624 * 359.97438 * 21 19 16 23 23 O 1.34226 * 120.00313 * 179.97438 * 21 19 16 24 24 C 1.39033 * 119.94922 * 359.97438 * 13 12 11 25 25 H 0.97000 * 120.00794 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.98007 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.79066 * 180.25769 * 11 10 9 28 28 H 1.08006 * 119.82323 * 179.73934 * 12 11 10 29 29 H 1.09006 * 113.46590 * 267.61859 * 17 16 14 30 30 H 1.08992 * 113.47022 * 38.00520 * 17 16 14 31 31 H 1.08996 * 114.20954 * 139.65863 * 18 17 16 32 32 H 1.09001 * 114.19960 * 272.47699 * 18 17 16 33 33 H 0.96697 * 116.99835 * 179.97438 * 23 21 19 34 34 H 1.08005 * 120.20348 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.5967 1.9847 -1.3947 5 1 3.4821 1.4736 0.8043 6 1 1.3902 2.6812 0.5903 7 6 2.0080 -1.2119 0.0005 8 1 3.0421 -1.2384 -0.3096 9 6 1.3608 -2.4019 0.4072 10 6 0.2685 -2.3461 1.2937 11 6 -0.3628 -3.5062 1.6836 12 6 0.0758 -4.7330 1.2177 13 6 1.1631 -4.8086 0.3409 14 6 1.6262 -6.1238 -0.1521 15 8 2.6380 -6.2001 -0.8212 16 7 0.9261 -7.2377 0.1405 17 6 -0.3494 -7.5425 0.8062 18 6 -0.4279 -8.8162 -0.0468 19 6 1.0984 -8.6828 -0.0712 20 1 1.5916 -9.1874 0.7597 21 6 1.7076 -9.0254 -1.4063 22 8 2.0013 -8.1451 -2.1801 23 8 1.9238 -10.3085 -1.7360 24 6 1.8081 -3.6465 -0.0668 25 1 -0.4851 0.8400 -0.0004 26 1 -0.0768 -1.3927 1.6653 27 1 -1.2030 -3.4585 2.3606 28 1 -0.4237 -5.6372 1.5330 29 1 -0.2458 -7.7403 1.8731 30 1 -1.1370 -6.8221 0.5858 31 1 -0.7937 -9.6916 0.4898 32 1 -0.9011 -8.6748 -1.0185 33 1 2.3162 -10.4787 -2.6032 34 1 2.6478 -3.7001 -0.7440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078157.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:13 Heat of formation + Delta-G solvation = -55.879467 kcal Electronic energy + Delta-G solvation = -20613.542662 eV Core-core repulsion = 17284.979589 eV Total energy + Delta-G solvation = -3328.563073 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01437 -39.22461 -37.74802 -36.69663 -35.94088 -33.71330 -30.68705 -29.84885 -28.84365 -27.63749 -25.30579 -23.27136 -22.46994 -20.98707 -20.57621 -18.97945 -18.16901 -17.67579 -17.00520 -16.09811 -15.61668 -15.37498 -15.02035 -14.62189 -14.44420 -13.65998 -13.44199 -13.31976 -12.83724 -12.69185 -12.54640 -12.37832 -11.94013 -11.69104 -11.51973 -11.35990 -11.16814 -11.06504 -10.65102 -10.54455 -10.33927 -10.00035 -9.51316 -9.19849 -9.04328 -8.56500 -7.61900 -7.53534 -6.83482 -4.41315 2.17463 2.23763 2.73849 2.75562 3.06059 3.08671 3.16216 3.21979 3.86086 3.92016 4.05505 4.58380 4.68800 4.91152 5.01257 5.14930 5.39278 5.43924 5.56207 5.59413 5.92280 5.97394 6.22279 6.28772 6.51660 6.89172 6.92571 7.02298 7.15244 7.35726 7.65493 7.82428 7.89499 7.94605 8.02928 8.18789 8.52426 8.78007 8.82824 8.86171 10.13409 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.034046 B = 0.004243 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.227846 B = 6597.500403 C = 7214.513808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.276 1.276 7 C -0.462 4.462 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.143 4.143 11 C -0.112 4.112 12 C -0.219 4.219 13 C -0.110 4.110 14 C 0.591 3.409 15 O -0.519 6.519 16 N -0.634 5.634 17 C 0.102 3.898 18 C -0.139 4.139 19 C 0.141 3.859 20 H 0.124 0.876 21 C 0.458 3.542 22 O -0.467 6.467 23 O -0.523 6.523 24 C -0.155 4.155 25 H 0.282 0.718 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.408 0.592 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -14.700 2.819 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.184 1.184 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.163 4.163 11 C -0.130 4.130 12 C -0.239 4.239 13 C -0.113 4.113 14 C 0.385 3.615 15 O -0.394 6.394 16 N -0.374 5.374 17 C -0.021 4.021 18 C -0.177 4.177 19 C 0.035 3.965 20 H 0.141 0.859 21 C 0.296 3.704 22 O -0.350 6.350 23 O -0.335 6.335 24 C -0.176 4.176 25 H 0.093 0.907 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.266 0.734 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.317 -13.988 2.526 14.596 hybrid contribution 0.596 0.658 -0.611 1.078 sum -2.721 -13.329 1.914 13.738 Atomic orbital electron populations 1.69809 1.07643 1.29482 1.34892 1.25892 0.94700 1.01360 0.92069 0.86327 0.80596 0.80320 0.79545 1.19325 1.18395 1.20107 1.19567 0.98901 0.91252 1.39445 0.90122 1.17557 0.91395 0.91727 0.89410 1.21429 0.98958 0.97003 0.98872 1.20615 0.99180 0.93017 1.00235 1.20849 1.00506 0.97074 1.05471 1.19206 0.99517 0.90483 1.02053 1.18596 0.81979 0.82609 0.78299 1.90750 1.25094 1.85832 1.37730 1.49511 1.24535 1.03232 1.60075 1.23053 0.86700 0.94946 0.97393 1.23483 0.92110 0.99626 1.02476 1.22143 0.97158 0.84628 0.92604 0.85885 1.23569 0.76542 0.80193 0.90049 1.90891 1.45073 1.48297 1.50754 1.84489 1.76962 1.29726 1.42354 1.21219 1.02383 0.91153 1.02812 0.90727 0.86469 0.88804 0.87846 0.89115 0.88559 0.88044 0.88323 0.73388 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.30 11.15 55.55 0.62 -19.68 16 2 C 0.08 1.95 5.09 -17.35 -0.09 1.86 16 3 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 5 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.43 9.03 -37.73 -0.34 -12.77 16 8 H 0.08 2.11 7.92 -52.49 -0.42 1.70 16 9 C 0.10 2.73 5.55 -106.87 -0.59 2.14 16 10 C -0.14 -3.61 8.69 -38.81 -0.34 -3.95 16 11 C -0.11 -2.47 10.01 -39.73 -0.40 -2.87 16 12 C -0.22 -4.61 9.16 -38.92 -0.36 -4.97 16 13 C -0.11 -2.59 5.87 -105.04 -0.62 -3.21 16 14 C 0.59 13.22 7.68 -12.31 -0.09 13.12 16 15 O -0.52 -13.38 14.71 -17.21 -0.25 -13.63 16 16 N -0.63 -10.58 3.46 -180.06 -0.62 -11.20 16 17 C 0.10 1.14 6.12 -8.50 -0.05 1.09 16 18 C -0.14 -1.23 8.00 -26.35 -0.21 -1.44 16 19 C 0.14 1.76 4.58 -73.68 -0.34 1.42 16 20 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 21 C 0.46 6.70 7.80 36.01 0.28 6.98 16 22 O -0.47 -9.38 14.84 -26.24 -0.39 -9.76 16 23 O -0.52 -5.41 13.42 -39.25 -0.53 -5.94 16 24 C -0.16 -4.08 9.34 -38.44 -0.36 -4.44 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.12 3.02 6.32 -52.49 -0.33 2.69 16 27 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.10 1.75 4.13 -52.48 -0.22 1.53 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.13 6.73 -51.93 -0.35 0.78 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.94 8.10 -51.93 -0.42 0.51 16 33 H 0.41 2.70 9.10 45.56 0.41 3.11 16 34 H 0.11 2.88 7.65 -52.48 -0.40 2.48 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -34.82 296.13 -7.79 -42.61 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -2.55 Total: 6.50 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.50 Total: -7.03 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.00 Total: -30.88 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.17 Total: -29.33 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.82 -7.79 -42.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078157.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.269 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds