Wall clock time and date at job start Mon Mar 30 2020 01:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 119.99840 * 2 1 4 4 H 1.48503 * 109.46968 * 269.99871 * 3 2 1 5 5 H 1.48501 * 109.47382 * 29.99694 * 3 2 1 6 6 H 1.48504 * 109.47294 * 150.00000 * 3 2 1 7 7 C 1.40123 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.46173 * 119.99889 * 359.73116 * 7 2 1 10 10 O 1.21737 * 120.00223 * 354.65096 * 9 7 2 11 11 N 1.34778 * 119.99497 * 174.65458 * 9 7 2 12 12 C 1.46527 * 124.94499 * 4.75354 * 11 9 7 13 13 C 1.53751 * 105.19388 * 180.02562 * 12 11 9 14 14 H 1.09006 * 110.42810 * 241.23849 * 13 12 11 15 15 C 1.53002 * 110.42322 * 118.88386 * 13 12 11 16 16 C 1.50694 * 109.47560 * 66.06907 * 15 13 12 17 17 O 1.20828 * 120.00116 * 355.97927 * 16 15 13 18 18 O 1.34230 * 120.00353 * 175.98102 * 16 15 13 19 19 C 1.51218 * 104.51852 * 0.02562 * 13 12 11 20 20 C 1.38123 * 131.00819 * 180.02562 * 19 13 12 21 21 C 1.38277 * 120.15220 * 179.97438 * 20 19 13 22 22 C 1.38350 * 119.85097 * 359.97438 * 21 20 19 23 23 C 1.37784 * 120.24100 * 359.97438 * 22 21 20 24 24 C 1.38711 * 108.51544 * 359.73295 * 19 13 12 25 25 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.29909 * 298.93274 * 12 11 9 27 27 H 1.08997 * 110.29813 * 61.07030 * 12 11 9 28 28 H 1.09004 * 109.46905 * 186.06861 * 15 13 12 29 29 H 1.09005 * 109.46967 * 306.06165 * 15 13 12 30 30 H 0.96703 * 116.99983 * 179.97438 * 18 16 15 31 31 H 1.07999 * 119.92849 * 359.93739 * 20 19 13 32 32 H 1.07996 * 120.07857 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.87849 * 179.97438 * 22 21 20 34 34 H 1.08003 * 119.86473 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4403 0.7000 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0001 9 6 1.2761 -2.4794 0.0070 10 8 0.0631 -2.4814 0.1103 11 7 1.9453 -3.6443 -0.1012 12 6 3.4044 -3.7744 -0.1311 13 6 3.6719 -5.2826 -0.2641 14 1 4.2335 -5.6467 0.5962 15 6 4.4307 -5.5780 -1.5595 16 6 5.8069 -4.9686 -1.4857 17 8 6.1208 -4.2992 -0.5301 18 8 6.6842 -5.1695 -2.4817 19 6 2.2964 -5.9097 -0.3010 20 6 1.9048 -7.2299 -0.4092 21 6 0.5614 -7.5572 -0.4203 22 6 -0.3914 -6.5589 -0.3221 23 6 -0.0064 -5.2405 -0.2129 24 6 1.3496 -4.9014 -0.1964 25 1 -0.4851 0.8400 -0.0004 26 1 3.8141 -3.2409 -0.9888 27 1 3.8371 -3.3934 0.7940 28 1 4.5175 -6.6565 -1.6918 29 1 3.8889 -5.1510 -2.4034 30 1 7.5545 -4.7580 -2.3897 31 1 2.6495 -8.0082 -0.4860 32 1 0.2565 -8.5898 -0.5045 33 1 -1.4408 -6.8140 -0.3311 34 1 -0.7554 -4.4661 -0.1362 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:52 Heat of formation + Delta-G solvation = -125.796778 kcal Electronic energy + Delta-G solvation = -21006.094693 eV Core-core repulsion = 17674.499778 eV Total energy + Delta-G solvation = -3331.594915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.03788 -40.91894 -38.84275 -37.39427 -36.77344 -34.93021 -34.10255 -31.07022 -30.87822 -28.56317 -28.14780 -24.36468 -24.00290 -22.66368 -21.29702 -21.15946 -19.03265 -18.78008 -17.86359 -17.68980 -17.29402 -16.65894 -16.33081 -16.26974 -16.25659 -15.23584 -14.80327 -14.61323 -14.40057 -13.95016 -13.85119 -13.51007 -13.46252 -13.28880 -12.91122 -12.75736 -12.62381 -12.52195 -12.41719 -12.17113 -12.08854 -11.70857 -11.49547 -11.11216 -10.86012 -10.00447 -9.65817 -8.49285 -8.46933 -7.03548 0.50646 0.62564 1.29077 1.32304 1.34513 1.50191 2.12587 2.18062 2.28336 2.52594 2.95552 3.41248 3.55498 3.61217 3.81081 4.20361 4.25760 4.29075 4.50623 4.55032 4.60512 4.64181 4.78699 4.83202 4.85122 5.08601 5.15555 5.18211 5.36577 5.62411 5.68779 5.72950 5.78622 5.89192 6.14341 6.44086 6.68151 7.07094 7.12273 8.19379 8.47075 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.007370 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.169285 B = 3798.492045 C = 5712.806180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.031 3.969 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.534 3.466 10 O -0.604 6.604 11 N -0.583 5.583 12 C 0.126 3.874 13 C -0.026 4.026 14 H 0.110 0.890 15 C -0.095 4.095 16 C 0.484 3.516 17 O -0.545 6.545 18 O -0.511 6.511 19 C -0.161 4.161 20 C -0.058 4.058 21 C -0.158 4.158 22 C -0.088 4.088 23 C -0.188 4.188 24 C 0.142 3.858 25 H 0.281 0.719 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.151 0.849 29 H 0.108 0.892 30 H 0.427 0.573 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.138 0.862 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.638 -13.981 -4.755 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.175 1.175 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.343 3.657 10 O -0.489 6.489 11 N -0.305 5.305 12 C 0.003 3.997 13 C -0.044 4.044 14 H 0.128 0.872 15 C -0.132 4.132 16 C 0.328 3.672 17 O -0.436 6.436 18 O -0.325 6.325 19 C -0.165 4.165 20 C -0.076 4.076 21 C -0.177 4.177 22 C -0.107 4.107 23 C -0.210 4.210 24 C 0.044 3.956 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.169 0.831 29 H 0.126 0.874 30 H 0.289 0.711 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.155 0.845 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.545 -13.664 -4.469 17.829 hybrid contribution 0.306 1.754 0.304 1.806 sum 10.851 -11.910 -4.165 16.641 Atomic orbital electron populations 1.70125 1.09546 1.29645 1.34650 1.27036 0.95621 1.04964 0.90980 0.84987 0.78715 0.74639 0.79858 1.18015 1.19036 1.17483 1.21367 0.94646 0.89504 1.53942 0.89617 1.18663 0.86744 0.83163 0.77082 1.90548 1.15847 1.86747 1.55796 1.46378 1.07789 1.04609 1.71693 1.21924 0.78962 0.97123 1.01674 1.20368 0.92962 0.91923 0.99170 0.87228 1.21405 0.87697 1.05481 0.98614 1.23571 0.87748 0.76881 0.78983 1.90763 1.79264 1.38653 1.34906 1.84488 1.29187 1.72099 1.46722 1.20072 0.92960 0.93611 1.09858 1.20742 0.96993 0.93209 0.96666 1.21303 0.92144 0.99959 1.04257 1.21122 1.01047 0.90822 0.97695 1.20967 0.93866 0.98010 1.08142 1.19085 0.94248 0.86153 0.96145 0.90930 0.91831 0.92057 0.83140 0.87383 0.71149 0.81543 0.82022 0.84450 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.95 11.84 21.85 0.26 -49.69 16 2 C 0.03 1.73 5.50 85.33 0.47 2.20 16 3 Si 1.00 41.55 29.56 68.60 2.03 43.58 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.56 -33.02 9.04 24.79 0.22 -32.79 16 8 H 0.09 4.66 7.12 -2.91 -0.02 4.64 16 9 C 0.53 32.95 7.70 86.30 0.66 33.62 16 10 O -0.60 -41.71 13.21 -4.47 -0.06 -41.77 16 11 N -0.58 -29.55 3.12 -634.49 -1.98 -31.53 16 12 C 0.13 5.07 4.67 86.63 0.40 5.47 16 13 C -0.03 -0.75 2.67 -11.12 -0.03 -0.78 16 14 H 0.11 2.90 8.08 -2.38 -0.02 2.88 16 15 C -0.09 -1.97 5.17 29.85 0.15 -1.82 16 16 C 0.48 10.77 7.91 71.23 0.56 11.33 16 17 O -0.55 -16.23 15.72 21.96 0.35 -15.88 16 18 O -0.51 -8.10 13.42 -51.42 -0.69 -8.79 16 19 C -0.16 -5.21 5.56 -19.61 -0.11 -5.32 16 20 C -0.06 -1.39 10.03 22.25 0.22 -1.16 16 21 C -0.16 -3.86 10.06 22.31 0.22 -3.63 16 22 C -0.09 -2.88 10.02 22.19 0.22 -2.66 16 23 C -0.19 -8.45 9.46 22.54 0.21 -8.24 16 24 C 0.14 6.38 6.62 38.42 0.25 6.63 16 25 H 0.28 15.49 8.29 -92.71 -0.77 14.72 16 26 H 0.06 2.56 7.29 -2.39 -0.02 2.54 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.15 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.43 3.37 9.10 -74.06 -0.67 2.70 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.09 4.88 6.28 -2.91 -0.02 4.87 16 Total: -1.00 -85.61 297.36 3.86 -81.76 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.47 Total: 19.48 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 3.48 Total: 2.85 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.72 Total: -81.22 kcal Atomic # 8 Polarization: -66.04 SS G_CDS: -0.40 Total: -66.44 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -85.61 3.86 -81.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.039 kcal (2) G-P(sol) polarization free energy of solvation -85.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds