Wall clock time and date at job start Mon Mar 30 2020 01:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48500 * 109.46979 * 264.98445 * 3 2 1 5 5 H 1.48494 * 109.47286 * 24.98434 * 3 2 1 6 6 H 1.48503 * 109.47265 * 144.98966 * 3 2 1 7 7 C 1.38951 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99659 * 205.91017 * 7 2 1 9 9 N 1.37087 * 120.00219 * 25.90565 * 7 2 1 10 10 C 1.46505 * 120.00261 * 7.77284 * 9 7 2 11 11 C 1.53003 * 109.46859 * 263.45729 * 10 9 7 12 12 C 1.50692 * 109.46959 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00274 * 359.97438 * 12 11 10 14 14 O 1.34231 * 120.00107 * 179.97438 * 12 11 10 15 15 C 1.34782 * 120.00305 * 187.76605 * 9 7 2 16 16 O 1.21289 * 120.00096 * 180.02562 * 15 9 7 17 17 C 1.50699 * 120.00026 * 0.02562 * 15 9 7 18 18 F 1.39902 * 110.74869 * 307.98193 * 17 15 9 19 19 C 1.55561 * 111.01670 * 184.40326 * 17 15 9 20 20 C 1.54940 * 100.82836 * 207.60610 * 19 17 15 21 21 O 1.43645 * 105.22490 * 36.44114 * 20 19 17 22 22 C 1.43244 * 109.96888 * 335.52549 * 21 20 19 23 23 H 0.97000 * 120.00087 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46758 * 23.45170 * 10 9 7 25 25 H 1.08998 * 109.47300 * 143.45646 * 10 9 7 26 26 H 1.09004 * 109.46652 * 299.99375 * 11 10 9 27 27 H 1.08994 * 109.47131 * 59.99389 * 11 10 9 28 28 H 0.96706 * 117.00224 * 179.97438 * 14 12 11 29 29 H 1.08999 * 111.22410 * 89.70742 * 19 17 15 30 30 H 1.09004 * 111.13389 * 325.47164 * 19 17 15 31 31 H 1.09002 * 110.30971 * 277.47727 * 20 19 17 32 32 H 1.09000 * 110.31335 * 155.40601 * 20 19 17 33 33 H 1.09001 * 109.82941 * 121.22084 * 22 21 20 34 34 H 1.08997 * 109.82894 * 242.19343 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.6015 1.9852 -1.3947 5 1 1.3966 2.6809 0.5913 6 1 3.4887 1.4731 0.8033 7 6 2.0087 -1.2034 -0.0005 8 1 3.0074 -1.2505 0.4082 9 7 1.4266 -2.3307 -0.5197 10 6 0.1465 -2.2354 -1.2258 11 6 -0.9934 -2.5734 -0.2629 12 6 -2.3102 -2.4747 -0.9890 13 8 -2.3345 -2.1653 -2.1567 14 8 -3.4561 -2.7306 -0.3385 15 6 2.0320 -3.5269 -0.3807 16 8 1.5172 -4.5242 -0.8405 17 6 3.3486 -3.6251 0.3459 18 9 4.2717 -2.7121 -0.1751 19 6 3.9109 -5.0744 0.2882 20 6 4.7497 -5.1133 1.5903 21 8 4.0020 -4.3419 2.5439 22 6 3.1567 -3.4076 1.8623 23 1 -0.4850 0.8400 -0.0004 24 1 0.0146 -1.2214 -1.6034 25 1 0.1382 -2.9375 -2.0595 26 1 -0.8614 -3.5874 0.1147 27 1 -0.9850 -1.8713 0.5708 28 1 -4.2757 -2.6540 -0.8461 29 1 4.5409 -5.2186 -0.5894 30 1 3.1065 -5.8095 0.3170 31 1 5.7283 -4.6630 1.4235 32 1 4.8608 -6.1402 1.9384 33 1 2.1158 -3.5853 2.1325 34 1 3.4406 -2.3895 2.1287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:11 Heat of formation + Delta-G solvation = -204.359997 kcal Electronic energy + Delta-G solvation = -22722.422203 eV Core-core repulsion = 18956.651306 eV Total energy + Delta-G solvation = -3765.770897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.105 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.29739 -39.70163 -39.09859 -37.98006 -35.69741 -35.21785 -31.86559 -31.45636 -30.70616 -28.84165 -25.32599 -24.50394 -22.59789 -21.74948 -20.30811 -19.29455 -17.97198 -17.49453 -16.77168 -16.20915 -15.79585 -15.57349 -15.27795 -14.82710 -14.59427 -14.34231 -14.02790 -13.81549 -13.41347 -13.14907 -12.67806 -12.51180 -12.39955 -11.90123 -11.58446 -11.51556 -11.31287 -11.18129 -11.13107 -10.96423 -10.66719 -10.51439 -10.19574 -10.03756 -9.92151 -9.31060 -9.20346 -8.66645 -8.13221 -6.67685 -4.09146 2.88537 2.98913 3.15438 3.16985 3.39048 3.63677 3.93832 4.03820 4.38329 4.54014 4.79742 4.85282 5.19467 5.30238 5.51742 5.65047 5.80530 5.82659 5.98288 6.09174 6.18603 6.22818 6.28709 6.44899 6.53788 6.90328 7.05093 7.11259 7.12545 7.34888 7.42177 8.14856 8.48694 8.80451 9.16224 9.55281 10.34002 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.008233 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.123419 B = 3399.951063 C = 4687.377313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.045 3.955 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.351 4.351 8 H 0.116 0.884 9 N -0.416 5.416 10 C 0.148 3.852 11 C -0.111 4.111 12 C 0.492 3.508 13 O -0.528 6.528 14 O -0.525 6.525 15 C 0.433 3.567 16 O -0.594 6.594 17 C 0.092 3.908 18 F -0.186 7.186 19 C -0.158 4.158 20 C 0.050 3.950 21 O -0.383 6.383 22 C 0.048 3.952 23 H 0.275 0.725 24 H 0.111 0.889 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.398 0.602 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -3.592 2.682 4.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.161 4.161 3 Si 0.746 3.254 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.478 4.478 8 H 0.133 0.867 9 N -0.131 5.131 10 C 0.024 3.976 11 C -0.149 4.149 12 C 0.336 3.664 13 O -0.417 6.417 14 O -0.336 6.336 15 C 0.220 3.780 16 O -0.481 6.481 17 C 0.070 3.930 18 F -0.166 7.166 19 C -0.196 4.196 20 C -0.027 4.027 21 O -0.303 6.303 22 C -0.029 4.029 23 H 0.085 0.915 24 H 0.129 0.871 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.154 0.846 28 H 0.255 0.745 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.651 -3.831 2.568 4.898 hybrid contribution -0.179 1.188 -0.634 1.359 sum 1.472 -2.643 1.934 3.590 Atomic orbital electron populations 1.69977 1.06325 1.28434 1.44323 1.25213 0.95181 1.00051 0.95693 0.86039 0.79675 0.80644 0.79036 1.19955 1.20865 1.19130 1.20116 1.01118 0.85712 1.40858 0.86700 1.43839 1.18011 1.05775 1.45494 1.21110 0.80672 1.03777 0.92004 1.21753 0.86874 1.04119 1.02144 1.23838 0.85869 0.71157 0.85566 1.90640 1.87861 1.44836 1.18330 1.84607 1.17561 1.83092 1.48343 1.19697 0.87644 0.83913 0.86759 1.90567 1.67657 1.35663 1.54189 1.22339 0.87564 0.88310 0.94757 1.92846 1.67424 1.68199 1.88131 1.23692 1.01163 0.95702 0.99079 1.23411 0.94831 0.96325 0.88115 1.88384 1.57997 1.52230 1.31662 1.23679 0.96151 0.94444 0.88627 0.91453 0.87128 0.92900 0.89791 0.84569 0.74539 0.88962 0.87435 0.92026 0.89414 0.89308 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.01 8.70 55.50 0.48 -19.53 16 2 C 0.05 1.04 4.89 -17.47 -0.09 0.96 16 3 Si 0.92 18.66 29.62 -169.99 -5.04 13.62 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.35 -8.31 8.49 -14.94 -0.13 -8.44 16 8 H 0.12 2.67 4.55 -52.48 -0.24 2.43 16 9 N -0.42 -9.89 2.64 -114.81 -0.30 -10.19 16 10 C 0.15 3.47 3.81 -4.04 -0.02 3.45 16 11 C -0.11 -2.34 5.61 -27.89 -0.16 -2.50 16 12 C 0.49 9.72 8.33 36.00 0.30 10.02 16 13 O -0.53 -11.64 16.74 -18.75 -0.31 -11.96 16 14 O -0.52 -8.33 13.42 -39.26 -0.53 -8.85 16 15 C 0.43 9.98 6.62 -10.98 -0.07 9.90 16 16 O -0.59 -14.64 15.38 5.55 0.09 -14.55 16 17 C 0.09 1.82 0.96 -89.69 -0.09 1.74 16 18 F -0.19 -3.83 14.78 2.25 0.03 -3.80 16 19 C -0.16 -2.60 6.15 -24.34 -0.15 -2.75 16 20 C 0.05 0.71 7.77 38.18 0.30 1.01 16 21 O -0.38 -6.65 11.36 -35.23 -0.40 -7.05 16 22 C 0.05 0.89 6.41 37.88 0.24 1.13 16 23 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 24 H 0.11 2.77 5.76 -51.93 -0.30 2.47 16 25 H 0.05 1.29 7.58 -51.93 -0.39 0.89 16 26 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 27 H 0.14 3.02 6.43 -51.93 -0.33 2.69 16 28 H 0.40 4.30 9.10 45.56 0.41 4.71 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.11 1.83 7.33 -51.93 -0.38 1.45 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.67 7.81 -51.93 -0.41 1.27 16 34 H 0.09 1.69 7.35 -51.93 -0.38 1.31 16 LS Contribution 289.79 15.07 4.37 4.37 Total: -1.00 -28.26 289.79 -4.31 -32.57 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -2.84 Total: 10.85 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 0.15 Total: 14.52 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.18 Total: -29.72 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.16 Total: -42.41 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.03 Total: -3.80 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.04 Total: 13.62 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.26 -4.31 -32.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.792 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds