Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48500 * 109.46979 * 264.98445 * 3 2 1 5 5 H 1.48494 * 109.47286 * 24.98434 * 3 2 1 6 6 H 1.48503 * 109.47265 * 144.98966 * 3 2 1 7 7 C 1.38951 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99659 * 205.91017 * 7 2 1 9 9 N 1.37087 * 120.00219 * 25.90565 * 7 2 1 10 10 C 1.46505 * 120.00261 * 7.77284 * 9 7 2 11 11 C 1.53003 * 109.46859 * 263.45729 * 10 9 7 12 12 C 1.50692 * 109.46959 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00274 * 359.97438 * 12 11 10 14 14 O 1.34231 * 120.00107 * 179.97438 * 12 11 10 15 15 C 1.34782 * 120.00305 * 187.76605 * 9 7 2 16 16 O 1.21289 * 120.00096 * 180.02562 * 15 9 7 17 17 C 1.50699 * 120.00026 * 0.02562 * 15 9 7 18 18 F 1.39902 * 110.74869 * 307.98193 * 17 15 9 19 19 C 1.55561 * 111.01670 * 184.40326 * 17 15 9 20 20 C 1.54940 * 100.82836 * 207.60610 * 19 17 15 21 21 O 1.43645 * 105.22490 * 36.44114 * 20 19 17 22 22 C 1.43244 * 109.96888 * 335.52549 * 21 20 19 23 23 H 0.97000 * 120.00087 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46758 * 23.45170 * 10 9 7 25 25 H 1.08998 * 109.47300 * 143.45646 * 10 9 7 26 26 H 1.09004 * 109.46652 * 299.99375 * 11 10 9 27 27 H 1.08994 * 109.47131 * 59.99389 * 11 10 9 28 28 H 0.96706 * 117.00224 * 179.97438 * 14 12 11 29 29 H 1.08999 * 111.22410 * 89.70742 * 19 17 15 30 30 H 1.09004 * 111.13389 * 325.47164 * 19 17 15 31 31 H 1.09002 * 110.30971 * 277.47727 * 20 19 17 32 32 H 1.09000 * 110.31335 * 155.40601 * 20 19 17 33 33 H 1.09001 * 109.82941 * 121.22084 * 22 21 20 34 34 H 1.08997 * 109.82894 * 242.19343 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.6015 1.9852 -1.3947 5 1 1.3966 2.6809 0.5913 6 1 3.4887 1.4731 0.8033 7 6 2.0087 -1.2034 -0.0005 8 1 3.0074 -1.2505 0.4082 9 7 1.4266 -2.3307 -0.5197 10 6 0.1465 -2.2354 -1.2258 11 6 -0.9934 -2.5734 -0.2629 12 6 -2.3102 -2.4747 -0.9890 13 8 -2.3345 -2.1653 -2.1567 14 8 -3.4561 -2.7306 -0.3385 15 6 2.0320 -3.5269 -0.3807 16 8 1.5172 -4.5242 -0.8405 17 6 3.3486 -3.6251 0.3459 18 9 4.2717 -2.7121 -0.1751 19 6 3.9109 -5.0744 0.2882 20 6 4.7497 -5.1133 1.5903 21 8 4.0020 -4.3419 2.5439 22 6 3.1567 -3.4076 1.8623 23 1 -0.4850 0.8400 -0.0004 24 1 0.0146 -1.2214 -1.6034 25 1 0.1382 -2.9375 -2.0595 26 1 -0.8614 -3.5874 0.1147 27 1 -0.9850 -1.8713 0.5708 28 1 -4.2757 -2.6540 -0.8461 29 1 4.5409 -5.2186 -0.5894 30 1 3.1065 -5.8095 0.3170 31 1 5.7283 -4.6630 1.4235 32 1 4.8608 -6.1402 1.9384 33 1 2.1158 -3.5853 2.1325 34 1 3.4406 -2.3895 2.1287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -223.568601 kcal Electronic energy + Delta-G solvation = -22723.255151 eV Core-core repulsion = 18956.651306 eV Total energy + Delta-G solvation = -3766.603844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.89559 -41.31904 -40.68838 -39.49827 -37.30946 -36.91427 -33.67598 -33.04003 -32.27013 -30.25203 -27.13060 -26.20472 -24.02303 -23.18918 -21.90761 -21.05736 -19.65011 -19.04330 -18.36649 -17.75578 -17.37889 -17.15629 -16.85686 -16.33141 -16.17846 -15.97698 -15.62884 -15.44104 -15.09051 -14.70545 -14.28956 -14.03667 -14.00292 -13.56567 -13.32742 -13.05717 -12.84667 -12.69336 -12.50864 -12.49811 -12.33833 -12.11871 -11.90109 -11.68292 -11.57658 -11.01991 -10.63717 -10.44024 -9.96585 -8.46292 -5.93157 1.28038 1.32296 1.49293 1.57879 1.70372 2.05732 2.30575 2.59542 2.84976 2.95689 3.18225 3.34520 3.84394 3.89926 4.03644 4.13688 4.23676 4.33676 4.58565 4.62297 4.70985 4.76599 4.81329 4.86048 5.07972 5.18232 5.21736 5.49539 5.58800 5.65732 5.81600 6.32116 6.98456 7.06579 7.34729 7.74018 8.55227 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.008233 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.123419 B = 3399.951063 C = 4687.377313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.368 4.368 8 H 0.118 0.882 9 N -0.425 5.425 10 C 0.153 3.847 11 C -0.101 4.101 12 C 0.502 3.498 13 O -0.554 6.554 14 O -0.511 6.511 15 C 0.422 3.578 16 O -0.617 6.617 17 C 0.086 3.914 18 F -0.191 7.191 19 C -0.153 4.153 20 C 0.051 3.949 21 O -0.390 6.390 22 C 0.058 3.942 23 H 0.277 0.723 24 H 0.094 0.906 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.424 0.576 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -3.648 3.508 5.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.192 4.192 3 Si 0.801 3.199 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.495 4.495 8 H 0.136 0.864 9 N -0.139 5.139 10 C 0.029 3.971 11 C -0.139 4.139 12 C 0.346 3.654 13 O -0.445 6.445 14 O -0.324 6.324 15 C 0.210 3.790 16 O -0.506 6.506 17 C 0.064 3.936 18 F -0.172 7.172 19 C -0.191 4.191 20 C -0.025 4.025 21 O -0.310 6.310 22 C -0.020 4.020 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.146 0.854 28 H 0.285 0.715 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.244 -3.894 3.413 5.643 hybrid contribution -0.450 1.171 -0.900 1.544 sum 1.794 -2.723 2.512 4.117 Atomic orbital electron populations 1.70036 1.07114 1.29029 1.44098 1.25887 0.95859 1.02225 0.95180 0.85175 0.78827 0.77390 0.78498 1.20630 1.20406 1.18448 1.20289 1.01408 0.86033 1.41722 0.86438 1.44020 1.18158 1.06340 1.45427 1.20932 0.81853 1.02089 0.92207 1.21493 0.87420 1.03720 1.01286 1.23396 0.86458 0.70675 0.84885 1.90637 1.88393 1.46169 1.19337 1.84519 1.17762 1.82091 1.48026 1.20287 0.88780 0.83323 0.86611 1.90534 1.68661 1.36244 1.55182 1.22418 0.85999 0.90216 0.94933 1.92825 1.67315 1.68725 1.88312 1.23719 1.01370 0.92967 1.01065 1.23661 0.94479 0.97950 0.86376 1.88373 1.58113 1.52231 1.32300 1.23476 0.96010 0.94771 0.87705 0.91301 0.88834 0.94630 0.89768 0.85408 0.71488 0.87580 0.88176 0.90398 0.86072 0.90238 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -40.62 8.70 21.66 0.19 -40.43 16 2 C 0.01 0.63 4.89 84.93 0.42 1.04 16 3 Si 0.98 37.73 29.62 68.60 2.03 39.76 16 4 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.37 -17.48 8.49 84.04 0.71 -16.77 16 8 H 0.12 5.44 4.55 -2.91 -0.01 5.42 16 9 N -0.42 -20.50 2.64 -635.53 -1.68 -22.18 16 10 C 0.15 7.35 3.81 86.38 0.33 7.68 16 11 C -0.10 -4.31 5.61 29.85 0.17 -4.14 16 12 C 0.50 19.58 8.33 71.23 0.59 20.17 16 13 O -0.55 -24.40 16.74 21.95 0.37 -24.04 16 14 O -0.51 -15.25 13.42 -51.43 -0.69 -15.94 16 15 C 0.42 19.64 6.62 87.66 0.58 20.22 16 16 O -0.62 -30.86 15.38 -3.06 -0.05 -30.91 16 17 C 0.09 3.35 0.96 -10.19 -0.01 3.34 16 18 F -0.19 -7.75 14.78 44.97 0.66 -7.09 16 19 C -0.15 -4.79 6.15 32.14 0.20 -4.59 16 20 C 0.05 1.32 7.77 72.65 0.56 1.88 16 21 O -0.39 -12.76 11.36 -148.98 -1.69 -14.45 16 22 C 0.06 2.09 6.41 72.45 0.46 2.56 16 23 H 0.28 12.42 8.31 -92.71 -0.77 11.65 16 24 H 0.09 4.81 5.76 -2.39 -0.01 4.79 16 25 H 0.04 1.79 7.58 -2.39 -0.02 1.77 16 26 H 0.08 3.56 8.14 -2.38 -0.02 3.54 16 27 H 0.13 5.72 6.43 -2.39 -0.02 5.71 16 28 H 0.42 8.08 9.10 -74.05 -0.67 7.41 16 29 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.10 3.29 7.33 -2.38 -0.02 3.28 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.08 3.00 7.81 -2.39 -0.02 2.98 16 34 H 0.09 3.26 7.35 -2.39 -0.02 3.25 16 Total: -1.00 -59.84 289.79 3.65 -56.19 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.48 Total: 27.69 kcal Atomic # 6 Polarization: 27.37 SS G_CDS: 4.02 Total: 31.39 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -1.49 Total: -62.60 kcal Atomic # 8 Polarization: -83.28 SS G_CDS: -2.06 Total: -85.34 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.66 Total: -7.09 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -59.84 3.65 -56.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.374 kcal (2) G-P(sol) polarization free energy of solvation -59.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds