Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48506 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47376 * 300.00082 * 3 2 1 6 6 H 1.48498 * 109.46958 * 60.00353 * 3 2 1 7 7 C 1.38954 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00098 * 201.75955 * 7 2 1 9 9 N 1.37105 * 119.99681 * 21.76118 * 7 2 1 10 10 C 1.46498 * 119.99815 * 215.52136 * 9 7 2 11 11 C 1.53001 * 109.47251 * 270.00356 * 10 9 7 12 12 C 1.50698 * 109.47168 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00161 * 359.97438 * 12 11 10 14 14 O 1.34227 * 119.99770 * 179.97438 * 12 11 10 15 15 C 1.34778 * 120.00219 * 35.52032 * 9 7 2 16 16 O 1.21293 * 119.99868 * 5.75015 * 15 9 7 17 17 C 1.50694 * 120.00085 * 185.74547 * 15 9 7 18 18 F 1.39896 * 110.75097 * 50.02626 * 17 15 9 19 19 C 1.55300 * 111.02673 * 173.62557 * 17 15 9 20 20 C 1.54944 * 100.94747 * 152.40051 * 19 17 15 21 21 O 1.43639 * 105.13230 * 323.55754 * 20 19 17 22 22 C 1.43234 * 109.97831 * 24.42695 * 21 20 19 23 23 H 0.96998 * 119.99865 * 4.28643 * 1 2 3 24 24 H 1.09003 * 109.46874 * 29.99851 * 10 9 7 25 25 H 1.08997 * 109.46986 * 149.99926 * 10 9 7 26 26 H 1.09010 * 109.46850 * 299.99955 * 11 10 9 27 27 H 1.09001 * 109.47607 * 59.99384 * 11 10 9 28 28 H 0.96702 * 117.00257 * 179.97438 * 14 12 11 29 29 H 1.09005 * 111.12212 * 270.32330 * 19 17 15 30 30 H 1.09005 * 111.12694 * 34.47770 * 19 17 15 31 31 H 1.08996 * 110.31115 * 204.63970 * 20 19 17 32 32 H 1.08998 * 110.30787 * 82.46845 * 20 19 17 33 33 H 1.09007 * 109.82973 * 238.77762 * 22 21 20 34 34 H 1.08992 * 109.91057 * 117.84579 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0311 -1.2369 0.3462 9 7 1.3966 -2.3482 -0.4413 10 6 1.6952 -3.6316 0.1990 11 6 2.8761 -4.2943 -0.5132 12 6 3.1828 -5.6148 0.1451 13 8 2.5248 -5.9874 1.0874 14 8 4.1871 -6.3770 -0.3156 15 6 0.5199 -2.2929 -1.4635 16 8 0.3505 -1.2513 -2.0615 17 6 -0.2496 -3.5252 -1.8636 18 9 -0.8500 -4.1186 -0.7481 19 6 -1.3087 -3.1925 -2.9497 20 6 -1.4188 -4.5545 -3.6802 21 8 -0.0856 -5.0891 -3.6798 22 6 0.6652 -4.5309 -2.5953 23 1 -0.4850 0.8377 -0.0628 24 1 1.9493 -3.4649 1.2458 25 1 0.8220 -4.2809 0.1360 26 1 2.6220 -4.4609 -1.5601 27 1 3.7493 -3.6450 -0.4503 28 1 4.3462 -7.2154 0.1392 29 1 -2.2599 -2.9111 -2.4977 30 1 -0.9500 -2.4137 -3.6227 31 1 -1.7676 -4.4084 -4.7025 32 1 -2.0932 -5.2196 -3.1409 33 1 1.5457 -4.0169 -2.9810 34 1 0.9694 -5.3210 -1.9090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -195.322552 kcal Electronic energy + Delta-G solvation = -23030.063424 eV Core-core repulsion = 19264.684420 eV Total energy + Delta-G solvation = -3765.379004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.47808 -40.12569 -39.12138 -37.85895 -36.07425 -34.78802 -32.57497 -31.16936 -30.25112 -29.15320 -25.45774 -24.23616 -22.73412 -21.92261 -20.80626 -19.41190 -18.02916 -17.44806 -16.71237 -16.59412 -16.11114 -15.69095 -15.27437 -15.00690 -14.83467 -14.46654 -13.96169 -13.80737 -13.29158 -13.14708 -13.00486 -12.73385 -12.57367 -11.77312 -11.56888 -11.48722 -11.41926 -11.22318 -11.16785 -10.93448 -10.70707 -10.59623 -10.41833 -10.37853 -10.10250 -9.46913 -9.01836 -8.32678 -7.34041 -6.25982 -3.99120 2.36426 3.14185 3.24928 3.35079 3.36650 3.71120 3.95925 4.18451 4.48150 4.59122 4.72963 5.10421 5.10526 5.24573 5.30372 5.34288 5.36703 5.50432 5.68422 5.75957 5.81067 5.88909 5.99250 6.20121 6.26287 6.43353 6.52764 6.66335 6.97763 7.45627 7.99476 8.03951 8.81582 8.92222 9.43813 9.98745 10.81588 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.009115 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.978647 B = 3071.028667 C = 4508.832369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.350 4.350 8 H 0.088 0.912 9 N -0.436 5.436 10 C 0.096 3.904 11 C -0.142 4.142 12 C 0.482 3.518 13 O -0.514 6.514 14 O -0.521 6.521 15 C 0.458 3.542 16 O -0.512 6.512 17 C 0.072 3.928 18 F -0.188 7.188 19 C -0.154 4.154 20 C 0.048 3.952 21 O -0.380 6.380 22 C 0.037 3.963 23 H 0.267 0.733 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.405 0.595 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -9.674 -3.721 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.212 1.212 7 C -0.476 4.476 8 H 0.105 0.895 9 N -0.156 5.156 10 C -0.029 4.029 11 C -0.181 4.181 12 C 0.324 3.676 13 O -0.402 6.402 14 O -0.332 6.332 15 C 0.243 3.757 16 O -0.389 6.389 17 C 0.050 3.950 18 F -0.168 7.168 19 C -0.192 4.192 20 C -0.028 4.028 21 O -0.299 6.299 22 C -0.040 4.040 23 H 0.077 0.923 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.131 0.869 28 H 0.263 0.737 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.019 -8.890 -4.016 9.962 hybrid contribution 0.298 0.239 0.709 0.805 sum 2.316 -8.651 -3.307 9.547 Atomic orbital electron populations 1.69939 1.06705 1.28089 1.40261 1.25125 0.94749 0.99580 0.94997 0.86162 0.79896 0.82568 0.77562 1.19434 1.20564 1.21165 1.19168 0.96518 0.85227 1.46673 0.89460 1.43245 1.39778 1.05458 1.27121 1.21677 0.95970 0.87651 0.97592 1.22227 1.03639 0.90301 1.01935 1.23648 0.76266 0.86260 0.81407 1.90720 1.49128 1.72633 1.27706 1.84579 1.51782 1.35516 1.61348 1.19334 0.85407 0.87869 0.83094 1.90540 1.65849 1.29743 1.52794 1.22807 0.93929 0.93655 0.84623 1.92780 1.84740 1.85077 1.54242 1.23605 0.99705 0.98588 0.97313 1.23485 0.84616 0.93430 1.01259 1.88376 1.23949 1.67540 1.50033 1.24019 0.95048 0.95671 0.89274 0.92283 0.89835 0.89514 0.87776 0.86919 0.73707 0.88650 0.87226 0.89138 0.91911 0.89042 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.57 11.36 55.50 0.63 -22.94 16 2 C 0.07 1.83 4.28 -17.47 -0.07 1.75 16 3 Si 0.91 21.08 29.61 -169.99 -5.03 16.05 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.35 -9.15 9.32 -14.93 -0.14 -9.29 16 8 H 0.09 2.14 7.92 -52.49 -0.42 1.73 16 9 N -0.44 -10.47 2.56 -114.81 -0.29 -10.76 16 10 C 0.10 1.91 4.16 -4.04 -0.02 1.89 16 11 C -0.14 -2.25 5.52 -27.88 -0.15 -2.40 16 12 C 0.48 7.08 8.33 36.00 0.30 7.38 16 13 O -0.51 -8.98 16.74 -18.75 -0.31 -9.30 16 14 O -0.52 -5.91 13.42 -39.25 -0.53 -6.44 16 15 C 0.46 11.16 5.87 -10.99 -0.06 11.10 16 16 O -0.51 -14.23 13.07 5.55 0.07 -14.16 16 17 C 0.07 1.44 0.96 -89.83 -0.09 1.36 16 18 F -0.19 -3.91 14.50 2.25 0.03 -3.88 16 19 C -0.15 -2.70 6.15 -24.49 -0.15 -2.85 16 20 C 0.05 0.70 7.78 38.18 0.30 1.00 16 21 O -0.38 -6.28 11.36 -35.23 -0.40 -6.68 16 22 C 0.04 0.63 5.07 37.89 0.19 0.82 16 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.08 1.71 8.00 -51.93 -0.42 1.29 16 25 H 0.09 1.75 4.65 -51.93 -0.24 1.51 16 26 H 0.10 1.55 4.49 -51.92 -0.23 1.31 16 27 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.40 2.74 9.10 45.56 0.41 3.16 16 29 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.11 2.02 7.30 -51.93 -0.38 1.64 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.52 6.79 -51.93 -0.35 1.16 16 34 H 0.08 1.27 6.62 -51.93 -0.34 0.93 16 LS Contribution 287.12 15.07 4.33 4.33 Total: -1.00 -33.40 287.12 -4.19 -37.59 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -2.79 Total: 5.42 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 0.10 Total: 10.76 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.34 Total: -33.70 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.17 Total: -36.57 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.03 Total: -3.88 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.40 -4.19 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.728 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds