Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48506 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47376 * 300.00082 * 3 2 1 6 6 H 1.48498 * 109.46958 * 60.00353 * 3 2 1 7 7 C 1.38954 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00098 * 201.75955 * 7 2 1 9 9 N 1.37105 * 119.99681 * 21.76118 * 7 2 1 10 10 C 1.46498 * 119.99815 * 215.52136 * 9 7 2 11 11 C 1.53001 * 109.47251 * 270.00356 * 10 9 7 12 12 C 1.50698 * 109.47168 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00161 * 359.97438 * 12 11 10 14 14 O 1.34227 * 119.99770 * 179.97438 * 12 11 10 15 15 C 1.34778 * 120.00219 * 35.52032 * 9 7 2 16 16 O 1.21293 * 119.99868 * 5.75015 * 15 9 7 17 17 C 1.50694 * 120.00085 * 185.74547 * 15 9 7 18 18 F 1.39896 * 110.75097 * 50.02626 * 17 15 9 19 19 C 1.55300 * 111.02673 * 173.62557 * 17 15 9 20 20 C 1.54944 * 100.94747 * 152.40051 * 19 17 15 21 21 O 1.43639 * 105.13230 * 323.55754 * 20 19 17 22 22 C 1.43234 * 109.97831 * 24.42695 * 21 20 19 23 23 H 0.96998 * 119.99865 * 4.28643 * 1 2 3 24 24 H 1.09003 * 109.46874 * 29.99851 * 10 9 7 25 25 H 1.08997 * 109.46986 * 149.99926 * 10 9 7 26 26 H 1.09010 * 109.46850 * 299.99955 * 11 10 9 27 27 H 1.09001 * 109.47607 * 59.99384 * 11 10 9 28 28 H 0.96702 * 117.00257 * 179.97438 * 14 12 11 29 29 H 1.09005 * 111.12212 * 270.32330 * 19 17 15 30 30 H 1.09005 * 111.12694 * 34.47770 * 19 17 15 31 31 H 1.08996 * 110.31115 * 204.63970 * 20 19 17 32 32 H 1.08998 * 110.30787 * 82.46845 * 20 19 17 33 33 H 1.09007 * 109.82973 * 238.77762 * 22 21 20 34 34 H 1.08992 * 109.91057 * 117.84579 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0311 -1.2369 0.3462 9 7 1.3966 -2.3482 -0.4413 10 6 1.6952 -3.6316 0.1990 11 6 2.8761 -4.2943 -0.5132 12 6 3.1828 -5.6148 0.1451 13 8 2.5248 -5.9874 1.0874 14 8 4.1871 -6.3770 -0.3156 15 6 0.5199 -2.2929 -1.4635 16 8 0.3505 -1.2513 -2.0615 17 6 -0.2496 -3.5252 -1.8636 18 9 -0.8500 -4.1186 -0.7481 19 6 -1.3087 -3.1925 -2.9497 20 6 -1.4188 -4.5545 -3.6802 21 8 -0.0856 -5.0891 -3.6798 22 6 0.6652 -4.5309 -2.5953 23 1 -0.4850 0.8377 -0.0628 24 1 1.9493 -3.4649 1.2458 25 1 0.8220 -4.2809 0.1360 26 1 2.6220 -4.4609 -1.5601 27 1 3.7493 -3.6450 -0.4503 28 1 4.3462 -7.2154 0.1392 29 1 -2.2599 -2.9111 -2.4977 30 1 -0.9500 -2.4137 -3.6227 31 1 -1.7676 -4.4084 -4.7025 32 1 -2.0932 -5.2196 -3.1409 33 1 1.5457 -4.0169 -2.9810 34 1 0.9694 -5.3210 -1.9090 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183648.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -220.115009 kcal Electronic energy + Delta-G solvation = -23031.138506 eV Core-core repulsion = 19264.684420 eV Total energy + Delta-G solvation = -3766.454085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.10685 -41.35522 -40.64188 -39.43915 -37.21786 -36.53608 -34.43525 -32.64888 -31.87543 -30.52777 -27.32134 -25.75688 -24.16286 -23.43215 -22.08519 -21.12126 -19.24897 -19.14842 -18.17019 -18.03199 -17.45192 -17.07716 -16.83433 -16.72543 -16.25132 -16.02947 -15.64431 -15.42736 -14.87278 -14.71088 -14.41989 -14.08685 -14.03127 -13.51246 -13.25149 -12.99731 -12.80334 -12.74221 -12.63811 -12.54539 -12.49384 -12.12339 -12.09030 -11.73827 -11.63347 -10.96935 -10.71118 -10.23295 -9.30137 -8.28978 -6.04385 1.20116 1.39662 1.46384 1.55758 1.91959 2.01580 2.40202 2.57957 2.81817 3.06947 3.18434 3.25980 3.74478 3.77619 3.89619 3.93822 4.01541 4.12957 4.36459 4.46940 4.54088 4.66991 4.73218 4.74880 4.79191 5.01427 5.04569 5.42986 5.62221 5.70519 6.03136 6.85774 6.98881 7.03519 7.49376 8.08529 8.78933 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.009115 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.978647 B = 3071.028667 C = 4508.832369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.015 3.985 3 Si 0.974 3.026 4 H -0.251 1.251 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.449 5.449 10 C 0.098 3.902 11 C -0.135 4.135 12 C 0.497 3.503 13 O -0.545 6.545 14 O -0.507 6.507 15 C 0.450 3.550 16 O -0.556 6.556 17 C 0.067 3.933 18 F -0.194 7.194 19 C -0.155 4.155 20 C 0.055 3.945 21 O -0.383 6.383 22 C 0.048 3.952 23 H 0.262 0.738 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.429 0.571 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -11.204 -4.474 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.192 4.192 3 Si 0.798 3.202 4 H -0.174 1.174 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.489 4.489 8 H 0.117 0.883 9 N -0.168 5.168 10 C -0.026 4.026 11 C -0.173 4.173 12 C 0.340 3.660 13 O -0.436 6.436 14 O -0.321 6.321 15 C 0.236 3.764 16 O -0.435 6.435 17 C 0.045 3.955 18 F -0.175 7.175 19 C -0.193 4.193 20 C -0.021 4.021 21 O -0.303 6.303 22 C -0.029 4.029 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.291 0.709 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.141 0.859 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.262 -10.479 -4.752 11.960 hybrid contribution -0.045 0.626 0.951 1.139 sum 3.216 -9.854 -3.801 11.040 Atomic orbital electron populations 1.70047 1.08293 1.28368 1.42789 1.26033 0.95404 1.02937 0.94804 0.85199 0.79625 0.78432 0.76902 1.17410 1.21909 1.20595 1.19584 0.97130 0.86169 1.45974 0.88312 1.43474 1.39719 1.06396 1.27258 1.21659 0.97613 0.86060 0.97244 1.21973 1.02121 0.91204 1.02040 1.23163 0.76389 0.85925 0.80531 1.90728 1.50487 1.73326 1.29063 1.84501 1.49939 1.36579 1.61037 1.20035 0.85057 0.88759 0.82555 1.90501 1.67003 1.31777 1.54261 1.22795 0.95010 0.92823 0.84919 1.92764 1.84874 1.84943 1.54905 1.23623 0.98806 1.00290 0.96591 1.23647 0.84003 0.91411 1.02989 1.88368 1.24808 1.67514 1.49569 1.23915 0.94450 0.95176 0.89354 0.92889 0.91011 0.89860 0.86543 0.86028 0.70906 0.88728 0.88541 0.85933 0.90280 0.88677 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.16 11.36 21.66 0.25 -50.91 16 2 C 0.02 0.84 4.28 84.93 0.36 1.21 16 3 Si 0.97 43.81 29.61 68.60 2.03 45.84 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.36 -19.04 9.32 84.04 0.78 -18.25 16 8 H 0.10 4.80 7.92 -2.91 -0.02 4.78 16 9 N -0.45 -21.70 2.56 -635.54 -1.63 -23.33 16 10 C 0.10 3.86 4.16 86.38 0.36 4.22 16 11 C -0.13 -4.02 5.52 29.85 0.16 -3.86 16 12 C 0.50 13.40 8.33 71.24 0.59 14.00 16 13 O -0.55 -18.17 16.74 21.97 0.37 -17.80 16 14 O -0.51 -9.72 13.42 -51.39 -0.69 -10.41 16 15 C 0.45 22.19 5.87 87.65 0.51 22.71 16 16 O -0.56 -31.68 13.07 -3.07 -0.04 -31.72 16 17 C 0.07 2.63 0.96 -10.28 -0.01 2.62 16 18 F -0.19 -8.02 14.50 44.97 0.65 -7.37 16 19 C -0.15 -5.32 6.15 32.05 0.20 -5.13 16 20 C 0.06 1.45 7.78 72.65 0.56 2.01 16 21 O -0.38 -11.59 11.36 -148.98 -1.69 -13.28 16 22 C 0.05 1.55 5.07 72.45 0.37 1.91 16 23 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 24 H 0.07 2.95 8.00 -2.39 -0.02 2.93 16 25 H 0.08 3.33 4.65 -2.39 -0.01 3.32 16 26 H 0.12 3.20 4.49 -2.38 -0.01 3.18 16 27 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.43 4.18 9.10 -74.06 -0.67 3.51 16 29 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 30 H 0.10 3.57 7.30 -2.38 -0.02 3.55 16 31 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.10 2.98 6.79 -2.38 -0.02 2.97 16 34 H 0.09 2.76 6.62 -2.39 -0.02 2.74 16 Total: -1.00 -73.08 287.12 3.63 -69.45 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.48 Total: 18.08 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 3.90 Total: 21.45 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -1.38 Total: -74.24 kcal Atomic # 8 Polarization: -71.16 SS G_CDS: -2.05 Total: -73.22 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.65 Total: -7.37 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -73.08 3.63 -69.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183648.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.663 kcal (2) G-P(sol) polarization free energy of solvation -73.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds