Wall clock time and date at job start Mon Mar 30 2020 01:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86804 * 119.99999 * 2 1 4 4 H 1.48497 * 109.46955 * 239.99894 * 3 2 1 5 5 H 1.48502 * 109.46733 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46758 * 120.00084 * 3 2 1 7 7 C 1.40051 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.21683 * 120.00126 * 4.99832 * 9 7 2 11 11 N 1.34782 * 119.99767 * 184.99917 * 9 7 2 12 12 C 1.47232 * 121.35332 * 174.77877 * 11 9 7 13 13 C 1.52773 * 107.89313 * 115.56177 * 12 11 9 14 14 C 1.50659 * 110.87104 * 47.50083 * 13 12 11 15 15 C 1.39159 * 117.46081 * 160.35170 * 14 13 12 16 16 C 1.37588 * 120.80536 * 179.52959 * 15 14 13 17 17 C 1.39656 * 119.66817 * 359.96811 * 16 15 14 18 18 C 1.47721 * 120.30565 * 180.24984 * 17 16 15 19 19 O 1.21471 * 120.00336 * 179.97438 * 18 17 16 20 20 O 1.34715 * 119.99702 * 359.97438 * 18 17 16 21 21 C 1.39341 * 119.39142 * 0.23291 * 17 16 15 22 22 C 1.37856 * 122.79915 * 340.24534 * 14 13 12 23 23 C 1.46675 * 121.35350 * 354.75382 * 11 9 7 24 24 H 0.96994 * 119.99804 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.77894 * 355.96977 * 12 11 9 26 26 H 1.08998 * 109.82654 * 235.18880 * 12 11 9 27 27 H 1.09000 * 109.19657 * 167.85247 * 13 12 11 28 28 H 1.08993 * 109.20164 * 287.14294 * 13 12 11 29 29 H 1.08001 * 119.59848 * 359.51363 * 15 14 13 30 30 H 1.08002 * 120.16693 * 179.97438 * 16 15 14 31 31 H 0.96707 * 116.99732 * 179.97438 * 20 18 17 32 32 H 1.08003 * 119.79859 * 179.97438 * 21 17 16 33 33 H 1.08997 * 109.43612 * 344.43474 * 23 11 9 34 34 H 1.08996 * 109.43287 * 104.35257 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0618 -2.4824 -0.0940 11 7 1.9452 -3.6456 0.0995 12 6 1.2351 -4.9301 0.2156 13 6 1.5541 -5.7569 -1.0287 14 6 3.0340 -5.7522 -1.3114 15 6 3.5349 -6.7633 -2.1259 16 6 4.8741 -6.8193 -2.4365 17 6 5.7425 -5.8500 -1.9297 18 6 7.1819 -5.8935 -2.2587 19 8 7.9322 -5.0474 -1.8152 20 8 7.6625 -6.8716 -3.0506 21 6 5.2385 -4.8413 -1.1110 22 6 3.8885 -4.7979 -0.8020 23 6 3.4114 -3.6853 0.0979 24 1 -0.4849 0.8400 -0.0004 25 1 0.1611 -4.7537 0.2757 26 1 1.5722 -5.4596 1.1067 27 1 1.2226 -6.7834 -0.8717 28 1 1.0246 -5.3368 -1.8838 29 1 2.8644 -7.5133 -2.5187 30 1 5.2519 -7.6088 -3.0693 31 1 8.6112 -6.8582 -3.2382 32 1 5.9042 -4.0886 -0.7151 33 1 3.7996 -2.7337 -0.2649 34 1 3.7705 -3.8607 1.1120 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610620478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:28 Heat of formation + Delta-G solvation = -102.551054 kcal Electronic energy + Delta-G solvation = -20583.579603 eV Core-core repulsion = 17252.992698 eV Total energy + Delta-G solvation = -3330.586905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54441 -39.45117 -37.42514 -36.18970 -34.84016 -32.74082 -32.53325 -30.96835 -29.55253 -26.44652 -25.27401 -24.41083 -22.52330 -21.63945 -20.62739 -18.81619 -17.99936 -17.31840 -16.65387 -15.76230 -15.67339 -15.36219 -14.93841 -14.69209 -14.36974 -14.12603 -13.75512 -13.34294 -13.26761 -12.65628 -12.44317 -12.19424 -11.85053 -11.76632 -11.54596 -11.35985 -11.11365 -11.04055 -10.88501 -10.77955 -10.45231 -10.26334 -10.14673 -8.89774 -8.83076 -8.53802 -7.68369 -7.36777 -6.25465 -4.71068 0.71199 1.39488 2.51094 2.90964 3.13814 3.19068 3.20589 3.77389 4.03788 4.41993 4.49336 4.76887 4.85704 4.93288 5.09943 5.26378 5.40703 5.55871 5.63409 5.70017 5.83084 5.97339 6.00814 6.10159 6.20135 6.24643 6.33073 6.34674 6.48873 6.49987 6.72294 6.92521 7.39479 7.46105 7.78478 8.03553 8.27097 8.96520 9.33629 10.50095 10.68681 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.005077 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.599707 B = 5513.790454 C = 6673.271059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.562 3.438 10 O -0.574 6.574 11 N -0.643 5.643 12 C 0.118 3.882 13 C -0.103 4.103 14 C -0.022 4.022 15 C -0.139 4.139 16 C -0.069 4.069 17 C -0.141 4.141 18 C 0.530 3.470 19 O -0.517 6.517 20 O -0.515 6.515 21 C -0.047 4.047 22 C -0.094 4.094 23 C 0.161 3.839 24 H 0.270 0.730 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.411 0.589 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.605 -13.072 -3.833 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.369 3.631 10 O -0.457 6.457 11 N -0.381 5.381 12 C -0.006 4.006 13 C -0.141 4.141 14 C -0.023 4.023 15 C -0.157 4.157 16 C -0.088 4.088 17 C -0.142 4.142 18 C 0.375 3.625 19 O -0.406 6.406 20 O -0.326 6.326 21 C -0.066 4.066 22 C -0.096 4.096 23 C 0.036 3.964 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.270 0.730 32 H 0.156 0.844 33 H 0.122 0.878 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.490 -12.700 -3.669 16.274 hybrid contribution 1.322 0.676 -0.259 1.507 sum 10.812 -12.024 -3.928 16.641 Atomic orbital electron populations 1.69995 1.07083 1.27560 1.34885 1.25715 0.94623 1.00317 0.92482 0.86446 0.79885 0.80990 0.79592 1.19184 1.20485 1.19148 1.20930 0.93580 0.89196 1.54370 0.90992 1.18210 0.86879 0.81884 0.76128 1.90596 1.14260 1.85861 1.54964 1.48228 1.04019 1.06087 1.79760 1.21146 0.99675 0.85287 0.94525 1.21003 0.91072 1.00888 1.01109 1.20004 0.96192 0.92485 0.93602 1.21184 0.95243 0.99402 0.99862 1.21230 0.93048 0.97097 0.97391 1.18822 0.89340 1.00505 1.05559 1.20968 0.89173 0.77736 0.74631 1.90886 1.59567 1.38841 1.51337 1.84566 1.32468 1.51169 1.64428 1.21190 0.94959 0.96171 0.94276 1.20241 0.92394 0.97584 0.99333 1.20271 0.83392 0.96368 0.96330 0.91932 0.89045 0.93134 0.90383 0.89718 0.85438 0.84884 0.73044 0.84394 0.87775 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.55 11.84 55.55 0.66 -21.89 16 2 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 3 Si 0.91 19.83 29.56 -169.99 -5.02 14.81 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.54 -14.93 8.83 -35.63 -0.31 -15.25 16 8 H 0.07 1.79 5.88 -52.49 -0.31 1.48 16 9 C 0.56 15.60 7.64 -12.99 -0.10 15.50 16 10 O -0.57 -18.10 14.54 5.20 0.08 -18.02 16 11 N -0.64 -14.17 2.93 -176.05 -0.52 -14.69 16 12 C 0.12 2.17 6.42 -3.76 -0.02 2.15 16 13 C -0.10 -1.55 5.86 -28.02 -0.16 -1.72 16 14 C -0.02 -0.34 5.78 -104.44 -0.60 -0.94 16 15 C -0.14 -1.71 9.57 -39.48 -0.38 -2.09 16 16 C -0.07 -0.83 9.62 -39.29 -0.38 -1.20 16 17 C -0.14 -1.90 5.87 -105.08 -0.62 -2.52 16 18 C 0.53 6.80 8.27 34.61 0.29 7.08 16 19 O -0.52 -8.03 17.14 -19.24 -0.33 -8.36 16 20 O -0.51 -4.71 12.70 -40.53 -0.51 -5.23 16 21 C -0.05 -0.70 9.17 -39.05 -0.36 -1.06 16 22 C -0.09 -1.52 5.82 -104.57 -0.61 -2.13 16 23 C 0.16 2.95 6.01 -5.03 -0.03 2.92 16 24 H 0.27 7.22 8.29 -40.82 -0.34 6.89 16 25 H 0.09 1.86 7.10 -51.93 -0.37 1.49 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.93 8.10 -51.93 -0.42 0.50 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.13 1.25 8.05 -52.49 -0.42 0.82 16 30 H 0.13 1.28 7.63 -52.49 -0.40 0.88 16 31 H 0.41 1.85 9.11 45.56 0.42 2.26 16 32 H 0.14 1.96 7.63 -52.48 -0.40 1.56 16 33 H 0.10 2.00 5.70 -51.93 -0.30 1.70 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -35.24 296.32 -7.18 -42.41 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.60 Total: 3.41 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -3.38 Total: 3.08 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.14 Total: -36.57 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.77 Total: -31.61 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.24 -7.18 -42.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.138 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds