Wall clock time and date at job start Mon Mar 30 2020 01:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99629 * 2 1 4 4 H 1.48506 * 109.46859 * 239.99986 * 3 2 1 5 5 H 1.48503 * 109.47021 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46944 * 119.99786 * 3 2 1 7 7 C 1.37877 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47208 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46990 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99817 * 180.02562 * 11 10 9 13 13 O 1.21654 * 120.00046 * 359.97438 * 12 11 10 14 14 C 1.47082 * 120.00237 * 179.97438 * 12 11 10 15 15 C 1.36010 * 127.13550 * 359.97438 * 14 12 11 16 16 O 1.33849 * 109.85871 * 179.97438 * 15 14 12 17 17 C 1.34924 * 111.34465 * 0.02562 * 16 15 14 18 18 C 1.38919 * 133.05990 * 180.02562 * 17 16 15 19 19 C 1.38308 * 119.93031 * 180.02562 * 18 17 16 20 20 O 1.35924 * 119.73425 * 179.97438 * 19 18 17 21 21 C 1.39152 * 120.52975 * 359.92753 * 19 18 17 22 22 C 1.37762 * 120.15290 * 0.05935 * 21 19 18 23 23 C 1.39133 * 119.69788 * 359.97438 * 22 21 19 24 24 H 0.96999 * 120.00531 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47397 * 59.99486 * 9 7 2 26 26 H 1.09005 * 109.46809 * 300.00184 * 9 7 2 27 27 H 1.08991 * 109.47042 * 59.99501 * 10 9 7 28 28 H 1.09001 * 109.46791 * 299.99624 * 10 9 7 29 29 H 0.97005 * 120.00253 * 359.97438 * 11 10 9 30 30 H 1.08007 * 125.07105 * 0.02562 * 15 14 12 31 31 H 1.08004 * 120.03814 * 359.93170 * 18 17 16 32 32 H 0.96698 * 114.00595 * 269.98662 * 20 19 18 33 33 H 1.08008 * 119.91983 * 180.02562 * 21 19 18 34 34 H 1.07998 * 120.15277 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0018 11 7 1.5131 -4.9307 0.0012 12 6 2.1870 -6.0979 0.0027 13 8 3.4036 -6.0978 0.0040 14 6 1.4518 -7.3717 0.0026 15 6 0.1022 -7.5408 0.0017 16 8 -0.1924 -8.8464 0.0014 17 6 0.9253 -9.6021 0.0027 18 6 1.1426 -10.9742 0.0025 19 6 2.4344 -11.4684 0.0046 20 8 2.6424 -12.8116 0.0050 21 6 3.5228 -10.6014 0.0054 22 6 3.3219 -9.2385 0.0053 23 6 2.0258 -8.7328 0.0039 24 1 -0.4851 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8896 26 1 0.6242 -2.5566 0.8903 27 1 2.8715 -3.6038 0.8922 28 1 2.8728 -3.6046 -0.8878 29 1 0.5431 -4.9308 0.0005 30 1 -0.6235 -6.7408 0.0005 31 1 0.3037 -11.6544 0.0023 32 1 2.7013 -13.2003 0.8884 33 1 4.5275 -10.9980 0.0067 34 1 4.1667 -8.5656 0.0064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611546667.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:26 Heat of formation + Delta-G solvation = -84.418313 kcal Electronic energy + Delta-G solvation = -19658.081300 eV Core-core repulsion = 16328.280689 eV Total energy + Delta-G solvation = -3329.800610 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.69589 -40.47189 -40.04719 -37.13903 -36.57217 -34.89610 -33.76919 -31.74199 -31.38902 -29.58570 -26.96963 -24.89182 -24.22731 -23.34683 -22.72503 -21.20500 -19.65334 -18.84921 -18.52037 -17.98251 -17.43923 -17.11540 -16.71726 -16.47230 -16.36692 -16.15776 -15.62239 -15.21809 -14.80031 -14.69728 -14.39520 -14.28210 -13.30837 -13.23187 -13.02552 -12.93200 -12.75398 -12.54078 -12.24681 -11.70866 -11.65442 -11.48963 -11.19481 -11.06518 -10.59729 -10.10654 -9.77162 -9.24779 -8.23956 -6.33902 -0.36474 0.10712 0.60932 1.42527 1.44298 1.48077 1.52263 2.12109 2.13899 2.43839 2.54693 3.11140 3.20740 3.34066 3.50462 3.73755 3.98905 4.15939 4.25124 4.32924 4.48975 4.50339 4.72692 4.85118 4.96401 4.99453 5.22165 5.23115 5.28473 5.39209 5.47726 5.58999 5.78544 5.85832 6.16286 6.56060 6.78887 6.80376 7.17950 7.35271 8.87567 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.049964 B = 0.002960 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.272768 B = 9456.561886 C = 9993.817292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.142 3.858 11 N -0.709 5.709 12 C 0.581 3.419 13 O -0.585 6.585 14 C -0.258 4.258 15 C 0.102 3.898 16 O -0.178 6.178 17 C 0.050 3.950 18 C -0.131 4.131 19 C 0.139 3.861 20 O -0.495 6.495 21 C -0.148 4.148 22 C -0.067 4.067 23 C -0.125 4.125 24 H 0.266 0.734 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.411 0.589 30 H 0.262 0.738 31 H 0.163 0.837 32 H 0.417 0.583 33 H 0.158 0.842 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 -23.569 1.800 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.018 3.982 11 N -0.359 5.359 12 C 0.370 3.630 13 O -0.467 6.467 14 C -0.263 4.263 15 C 0.033 3.967 16 O -0.077 6.077 17 C 0.003 3.997 18 C -0.150 4.150 19 C 0.094 3.906 20 O -0.309 6.309 21 C -0.166 4.166 22 C -0.085 4.085 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.248 0.752 30 H 0.277 0.723 31 H 0.181 0.819 32 H 0.278 0.722 33 H 0.175 0.825 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.466 -23.514 1.208 23.550 hybrid contribution 0.123 1.298 0.457 1.382 sum -0.343 -22.216 1.665 22.281 Atomic orbital electron populations 1.70034 1.07434 1.28075 1.50926 1.25829 0.95787 1.02950 0.94427 0.85538 0.78349 0.78325 0.79082 1.19449 1.20583 1.19403 1.21441 0.93602 0.91995 1.51656 0.92384 1.19135 0.94189 0.91425 0.96665 1.21272 0.95143 0.81711 1.00034 1.45916 1.10980 1.05168 1.73873 1.17483 0.86628 0.83150 0.75777 1.90726 1.15155 1.88100 1.52701 1.20921 0.94610 0.92495 1.18266 1.25248 0.95503 0.83704 0.92206 1.83894 1.32354 1.16730 1.74706 1.19421 0.82967 0.93014 1.04282 1.20289 0.98698 0.89841 1.06176 1.17891 0.90246 0.84053 0.98459 1.84793 1.94154 1.16053 1.35940 1.21567 1.00709 0.91777 1.02591 1.20592 0.95236 0.95574 0.97077 1.19720 0.95259 0.91341 1.06279 0.92510 0.96963 0.96925 0.93340 0.93417 0.75235 0.72290 0.81947 0.72203 0.82468 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -30.19 9.11 25.60 0.23 -29.96 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.14 5.99 5.61 86.38 0.48 6.47 16 11 N -0.71 -24.01 5.55 -466.71 -2.59 -26.60 16 12 C 0.58 20.55 7.80 86.56 0.68 21.22 16 13 O -0.58 -25.31 16.27 -4.20 -0.07 -25.38 16 14 C -0.26 -7.29 6.31 -18.97 -0.12 -7.41 16 15 C 0.10 2.00 11.52 67.30 0.78 2.78 16 16 O -0.18 -3.73 10.53 -4.39 -0.05 -3.78 16 17 C 0.05 1.15 7.38 22.92 0.17 1.32 16 18 C -0.13 -2.40 9.99 22.45 0.22 -2.17 16 19 C 0.14 2.40 6.69 22.51 0.15 2.56 16 20 O -0.50 -6.22 13.49 -92.69 -1.25 -7.47 16 21 C -0.15 -2.92 9.97 22.38 0.22 -2.69 16 22 C -0.07 -1.75 9.88 22.37 0.22 -1.53 16 23 C -0.12 -3.47 6.29 -20.07 -0.13 -3.60 16 24 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.41 10.99 7.39 -92.70 -0.69 10.30 16 30 H 0.26 2.62 7.41 -2.91 -0.02 2.60 16 31 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.42 0.85 9.06 -74.06 -0.67 0.18 16 33 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.13 3.68 7.53 -2.91 -0.02 3.66 16 Total: -1.00 -73.68 307.20 1.69 -72.00 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -0.20 Total: 9.83 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 3.52 Total: -10.76 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -2.30 Total: -79.61 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.36 Total: -36.62 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.68 1.69 -72.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611546667.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.422 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds