Wall clock time and date at job start Mon Mar 30 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47104 * 45.25058 * 3 2 1 5 5 C 1.36907 * 120.00219 * 264.70831 * 4 3 2 6 6 H 1.07995 * 119.99935 * 130.89798 * 5 4 3 7 7 C 1.39020 * 119.99592 * 310.90078 * 5 4 3 8 8 N 1.31381 * 119.99868 * 170.07351 * 7 5 4 9 9 Si 1.86797 * 120.00430 * 350.07866 * 7 5 4 10 10 H 1.48500 * 109.47436 * 95.28169 * 9 7 5 11 11 H 1.48500 * 109.47222 * 215.28184 * 9 7 5 12 12 H 1.48506 * 109.46656 * 335.27899 * 9 7 5 13 13 C 1.34775 * 119.99945 * 84.71020 * 4 3 2 14 14 O 1.21628 * 120.00393 * 2.20821 * 13 4 3 15 15 C 1.47439 * 120.00272 * 182.21084 * 13 4 3 16 16 C 1.39776 * 120.16526 * 307.98840 * 15 13 4 17 17 C 1.38217 * 119.83715 * 179.97438 * 16 15 13 18 18 O 1.35995 * 119.90261 * 180.02562 * 17 16 15 19 19 C 1.42895 * 117.00328 * 180.02562 * 18 17 16 20 20 C 1.38976 * 120.19989 * 0.02562 * 17 16 15 21 21 C 1.38055 * 120.34469 * 359.71781 * 20 17 16 22 22 C 1.38661 * 120.14790 * 0.56204 * 21 20 17 23 23 O 1.35734 * 120.09362 * 179.71994 * 22 21 20 24 24 H 4.40640 * 5.51287 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47138 * 285.24777 * 3 2 1 26 26 H 1.08997 * 109.46936 * 165.25288 * 3 2 1 27 27 H 0.97004 * 120.00428 * 180.02562 * 8 7 5 28 28 H 1.07996 * 120.07996 * 359.95682 * 16 15 13 29 29 H 1.08995 * 109.47147 * 180.02562 * 19 18 17 30 30 H 1.09005 * 109.47279 * 300.00430 * 19 18 17 31 31 H 1.08996 * 109.47416 * 59.99939 * 19 18 17 32 32 H 1.07996 * 119.83218 * 180.02562 * 20 17 16 33 33 H 1.07992 * 119.92773 * 180.27903 * 21 20 17 34 34 H 0.96704 * 113.99935 * 269.72388 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9715 -0.9809 5 6 3.4666 -2.2385 -0.5823 6 1 3.0841 -3.0920 -1.1222 7 6 4.2959 -2.4262 0.5176 8 7 4.4586 -3.6293 1.0198 9 14 5.1789 -0.9681 1.2814 10 1 4.3834 -0.4505 2.4236 11 1 6.5165 -1.3965 1.7637 12 1 5.3388 0.1020 0.2642 13 6 3.2578 -0.6185 -2.2758 14 8 3.0014 0.5185 -2.6233 15 6 3.7031 -1.6108 -3.2713 16 6 4.8722 -2.3460 -3.0557 17 6 5.2831 -3.2748 -3.9932 18 8 6.4201 -3.9913 -3.7846 19 6 6.7873 -4.9339 -4.7938 20 6 4.5379 -3.4788 -5.1484 21 6 3.3792 -2.7608 -5.3668 22 6 2.9568 -1.8212 -4.4387 23 8 1.8204 -1.1118 -4.6572 24 1 -1.0498 0.0000 -0.0003 25 1 3.0095 -0.2694 0.9915 26 1 3.0089 0.9946 -0.2616 27 1 5.0370 -3.7603 1.7875 28 1 5.4531 -2.1885 -2.1590 29 1 7.7101 -5.4361 -4.5034 30 1 5.9931 -5.6716 -4.9082 31 1 6.9386 -4.4134 -5.7394 32 1 4.8643 -4.2063 -5.8768 33 1 2.8030 -2.9279 -6.2647 34 1 1.9603 -0.2819 -5.1335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310575128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:16 Heat of formation + Delta-G solvation = -13.494216 kcal Electronic energy + Delta-G solvation = -21255.102983 eV Core-core repulsion = 17928.377872 eV Total energy + Delta-G solvation = -3326.725111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09788 -38.85466 -37.68356 -35.37586 -35.14554 -32.74814 -31.71988 -30.78528 -29.01488 -26.96488 -26.66013 -24.99511 -22.79675 -21.88580 -19.58924 -18.53308 -17.84437 -17.76138 -16.45198 -16.22394 -15.90110 -15.48220 -15.24365 -14.89008 -14.40365 -14.06291 -13.79920 -13.24789 -13.06083 -12.93666 -12.68301 -12.28593 -12.14841 -12.02021 -11.79639 -11.14838 -11.04959 -10.82544 -10.54682 -10.23805 -10.12506 -9.83442 -9.43226 -9.33765 -8.80901 -8.48584 -7.90168 -7.63058 -6.48933 -4.26283 1.45934 1.75257 3.00121 3.15409 3.21476 3.23914 3.45885 3.53261 3.69080 4.05068 4.11263 4.52892 4.70618 4.85016 5.05354 5.12858 5.22862 5.26361 5.30043 5.56835 5.67137 5.88075 5.93306 6.02495 6.19175 6.37308 6.44920 6.54175 6.65991 6.83355 6.99942 7.29548 7.69830 7.97694 8.13331 8.23604 8.27726 8.84948 9.17097 9.51702 10.60144 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.008594 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.534541 B = 3257.278457 C = 4584.247805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.166 4.166 3 C 0.202 3.798 4 N -0.455 5.455 5 C -0.343 4.343 6 H 0.103 0.897 7 C 0.072 3.928 8 N -0.857 5.857 9 Si 0.866 3.134 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.256 1.256 13 C 0.543 3.457 14 O -0.581 6.581 15 C -0.076 4.076 16 C -0.065 4.065 17 C 0.104 3.896 18 O -0.313 6.313 19 C 0.029 3.971 20 C -0.185 4.185 21 C -0.122 4.122 22 C 0.103 3.897 23 O -0.489 6.489 24 H 0.212 0.788 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.277 0.723 28 H 0.147 0.853 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 0.118 -9.242 9.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.167 4.167 3 C 0.081 3.919 4 N -0.175 5.175 5 C -0.471 4.471 6 H 0.120 0.880 7 C -0.136 4.136 8 N -0.491 5.491 9 Si 0.693 3.307 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.179 1.179 13 C 0.332 3.668 14 O -0.464 6.464 15 C -0.079 4.079 16 C -0.085 4.085 17 C 0.060 3.940 18 O -0.226 6.226 19 C -0.066 4.066 20 C -0.204 4.204 21 C -0.141 4.141 22 C 0.057 3.943 23 O -0.299 6.299 24 H 0.229 0.771 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.165 0.835 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.077 0.081 -8.770 9.013 hybrid contribution 0.317 0.553 0.177 0.662 sum 2.394 0.634 -8.593 8.942 Atomic orbital electron populations 1.24644 0.95619 1.02260 1.01852 1.23680 0.94855 0.98897 0.99245 1.18710 0.83949 0.95014 0.94271 1.43526 1.56573 1.12213 1.05154 1.19045 1.29696 0.82074 1.16247 0.87951 1.25464 0.95356 0.96489 0.96316 1.69645 1.35709 1.21429 1.22334 0.87012 0.79944 0.83433 0.80358 1.19623 1.20703 1.17936 1.18075 0.79223 0.86494 0.83003 1.90646 1.54682 1.20503 1.80616 1.19986 0.94888 0.97855 0.95170 1.20548 0.96292 0.93494 0.98123 1.18843 0.87161 0.93746 0.94272 1.86145 1.39334 1.51455 1.45681 1.22983 1.00985 0.91477 0.91178 1.21062 0.97391 1.03776 0.98215 1.20941 0.96260 0.97697 0.99188 1.18275 0.87422 0.95532 0.93097 1.84749 1.28043 1.37338 1.79745 0.77100 0.89159 0.89015 0.91261 0.83484 0.88614 0.92864 0.93101 0.85501 0.85368 0.75716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.37 19.25 29.55 0.57 -3.80 16 2 C -0.17 -3.68 13.62 -37.12 -0.51 -4.19 16 3 C 0.20 4.65 4.28 -6.83 -0.03 4.62 16 4 N -0.45 -11.31 1.99 -119.16 -0.24 -11.55 16 5 C -0.34 -9.04 7.11 -15.00 -0.11 -9.15 16 6 H 0.10 2.96 7.75 -52.49 -0.41 2.55 16 7 C 0.07 1.88 5.40 -17.45 -0.09 1.79 16 8 N -0.86 -23.42 13.95 55.50 0.77 -22.64 16 9 Si 0.87 19.72 24.86 -169.99 -4.23 15.49 16 10 H -0.27 -5.91 6.91 56.52 0.39 -5.52 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.26 -5.78 7.01 56.52 0.40 -5.39 16 13 C 0.54 13.24 6.79 -12.51 -0.08 13.16 16 14 O -0.58 -14.70 16.31 -0.85 -0.01 -14.71 16 15 C -0.08 -1.65 5.02 -104.86 -0.53 -2.18 16 16 C -0.07 -1.37 8.25 -39.01 -0.32 -1.69 16 17 C 0.10 1.89 6.68 -39.32 -0.26 1.63 16 18 O -0.31 -5.28 10.49 -19.73 -0.21 -5.49 16 19 C 0.03 0.33 9.81 101.05 0.99 1.32 16 20 C -0.19 -2.85 9.02 -39.38 -0.36 -3.20 16 21 C -0.12 -1.95 9.97 -39.49 -0.39 -2.34 16 22 C 0.10 1.98 6.70 -38.71 -0.26 1.72 16 23 O -0.49 -9.10 12.63 -25.02 -0.32 -9.42 16 24 H 0.21 3.09 7.80 -54.10 -0.42 2.67 16 25 H 0.09 2.04 4.25 -51.93 -0.22 1.82 16 26 H 0.09 2.01 7.55 -51.93 -0.39 1.62 16 27 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.15 3.31 7.28 -52.49 -0.38 2.93 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 31 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 32 H 0.13 1.50 6.27 -52.49 -0.33 1.18 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.39 5.61 9.06 45.56 0.41 6.02 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -31.94 302.93 -3.57 -35.51 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -2.53 Total: 10.58 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.38 Total: -2.33 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.54 Total: -34.20 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.54 Total: -29.61 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.23 Total: 15.49 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.94 -3.57 -35.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.015 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds