Wall clock time and date at job start Mon Mar 30 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47104 * 45.25058 * 3 2 1 5 5 C 1.36907 * 120.00219 * 264.70831 * 4 3 2 6 6 H 1.07995 * 119.99935 * 130.89798 * 5 4 3 7 7 C 1.39020 * 119.99592 * 310.90078 * 5 4 3 8 8 N 1.31381 * 119.99868 * 170.07351 * 7 5 4 9 9 Si 1.86797 * 120.00430 * 350.07866 * 7 5 4 10 10 H 1.48500 * 109.47436 * 95.28169 * 9 7 5 11 11 H 1.48500 * 109.47222 * 215.28184 * 9 7 5 12 12 H 1.48506 * 109.46656 * 335.27899 * 9 7 5 13 13 C 1.34775 * 119.99945 * 84.71020 * 4 3 2 14 14 O 1.21628 * 120.00393 * 2.20821 * 13 4 3 15 15 C 1.47439 * 120.00272 * 182.21084 * 13 4 3 16 16 C 1.39776 * 120.16526 * 307.98840 * 15 13 4 17 17 C 1.38217 * 119.83715 * 179.97438 * 16 15 13 18 18 O 1.35995 * 119.90261 * 180.02562 * 17 16 15 19 19 C 1.42895 * 117.00328 * 180.02562 * 18 17 16 20 20 C 1.38976 * 120.19989 * 0.02562 * 17 16 15 21 21 C 1.38055 * 120.34469 * 359.71781 * 20 17 16 22 22 C 1.38661 * 120.14790 * 0.56204 * 21 20 17 23 23 O 1.35734 * 120.09362 * 179.71994 * 22 21 20 24 24 H 4.40640 * 5.51287 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47138 * 285.24777 * 3 2 1 26 26 H 1.08997 * 109.46936 * 165.25288 * 3 2 1 27 27 H 0.97004 * 120.00428 * 180.02562 * 8 7 5 28 28 H 1.07996 * 120.07996 * 359.95682 * 16 15 13 29 29 H 1.08995 * 109.47147 * 180.02562 * 19 18 17 30 30 H 1.09005 * 109.47279 * 300.00430 * 19 18 17 31 31 H 1.08996 * 109.47416 * 59.99939 * 19 18 17 32 32 H 1.07996 * 119.83218 * 180.02562 * 20 17 16 33 33 H 1.07992 * 119.92773 * 180.27903 * 21 20 17 34 34 H 0.96704 * 113.99935 * 269.72388 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9715 -0.9809 5 6 3.4666 -2.2385 -0.5823 6 1 3.0841 -3.0920 -1.1222 7 6 4.2959 -2.4262 0.5176 8 7 4.4586 -3.6293 1.0198 9 14 5.1789 -0.9681 1.2814 10 1 4.3834 -0.4505 2.4236 11 1 6.5165 -1.3965 1.7637 12 1 5.3388 0.1020 0.2642 13 6 3.2578 -0.6185 -2.2758 14 8 3.0014 0.5185 -2.6233 15 6 3.7031 -1.6108 -3.2713 16 6 4.8722 -2.3460 -3.0557 17 6 5.2831 -3.2748 -3.9932 18 8 6.4201 -3.9913 -3.7846 19 6 6.7873 -4.9339 -4.7938 20 6 4.5379 -3.4788 -5.1484 21 6 3.3792 -2.7608 -5.3668 22 6 2.9568 -1.8212 -4.4387 23 8 1.8204 -1.1118 -4.6572 24 1 -1.0498 0.0000 -0.0003 25 1 3.0095 -0.2694 0.9915 26 1 3.0089 0.9946 -0.2616 27 1 5.0370 -3.7603 1.7875 28 1 5.4531 -2.1885 -2.1590 29 1 7.7101 -5.4361 -4.5034 30 1 5.9931 -5.6716 -4.9082 31 1 6.9386 -4.4134 -5.7394 32 1 4.8643 -4.2063 -5.8768 33 1 2.8030 -2.9279 -6.2647 34 1 1.9603 -0.2819 -5.1335 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310575128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:15 Heat of formation + Delta-G solvation = -36.768583 kcal Electronic energy + Delta-G solvation = -21256.112235 eV Core-core repulsion = 17928.377872 eV Total energy + Delta-G solvation = -3327.734363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.61595 -40.41804 -39.14462 -37.09144 -36.70750 -34.56015 -33.57142 -32.24551 -30.35246 -28.58244 -27.84552 -26.93918 -24.31018 -23.30624 -21.27770 -20.33438 -19.40222 -19.14137 -18.08843 -17.71983 -17.63352 -16.99906 -16.60270 -16.33190 -16.11094 -15.77183 -15.14747 -14.88844 -14.81085 -14.59369 -14.31845 -13.92671 -13.61786 -13.29869 -13.18359 -12.96832 -12.69264 -12.30193 -12.06981 -11.75028 -11.62537 -11.51854 -11.28154 -11.07143 -10.63702 -9.97309 -9.86032 -9.00378 -8.51958 -6.32560 -0.00047 0.35949 1.16747 1.27195 1.37797 1.53974 1.84206 1.88794 2.13816 2.41360 2.58559 2.81403 2.94636 3.32470 3.54817 3.82833 3.86764 4.14942 4.24633 4.32319 4.40361 4.48239 4.52002 4.58364 4.77116 4.95277 5.02556 5.09998 5.26209 5.37570 5.39741 5.60466 6.00674 6.10961 6.47526 6.66753 6.83726 6.85654 7.19483 7.57651 8.60943 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.008594 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.534541 B = 3257.278457 C = 4584.247805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.234 4.234 3 C 0.200 3.800 4 N -0.465 5.465 5 C -0.334 4.334 6 H 0.065 0.935 7 C 0.037 3.963 8 N -0.895 5.895 9 Si 0.917 3.083 10 H -0.252 1.252 11 H -0.274 1.274 12 H -0.260 1.260 13 C 0.537 3.463 14 O -0.598 6.598 15 C -0.112 4.112 16 C -0.092 4.092 17 C 0.103 3.897 18 O -0.339 6.339 19 C 0.016 3.984 20 C -0.165 4.165 21 C -0.106 4.106 22 C 0.091 3.909 23 O -0.501 6.501 24 H 0.259 0.741 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.282 0.718 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 -0.313 -11.059 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.236 4.236 3 C 0.079 3.921 4 N -0.185 5.185 5 C -0.462 4.462 6 H 0.083 0.917 7 C -0.168 4.168 8 N -0.531 5.531 9 Si 0.741 3.259 10 H -0.177 1.177 11 H -0.200 1.200 12 H -0.184 1.184 13 C 0.327 3.673 14 O -0.484 6.484 15 C -0.115 4.115 16 C -0.112 4.112 17 C 0.058 3.942 18 O -0.253 6.253 19 C -0.078 4.078 20 C -0.184 4.184 21 C -0.124 4.124 22 C 0.045 3.955 23 O -0.313 6.313 24 H 0.275 0.725 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.192 0.808 33 H 0.188 0.812 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.633 -0.347 -10.591 10.722 hybrid contribution 0.404 0.617 0.602 0.952 sum 2.037 0.270 -9.989 10.198 Atomic orbital electron populations 1.25719 0.96520 0.99016 0.98600 1.23866 0.95517 1.01913 1.02268 1.18664 0.85273 0.94518 0.93692 1.43616 1.57127 1.11922 1.05844 1.18614 1.29830 0.81850 1.15911 0.91695 1.25966 0.95572 0.98656 0.96580 1.69717 1.36884 1.23131 1.23338 0.86206 0.79276 0.80472 0.79949 1.17675 1.20005 1.18404 1.18591 0.78430 0.86933 0.83317 1.90593 1.55532 1.21315 1.80921 1.19994 0.96418 0.98952 0.96130 1.20329 0.96602 0.95761 0.98492 1.18892 0.87905 0.92984 0.94464 1.86119 1.38750 1.52264 1.48201 1.23405 1.02284 0.91006 0.91118 1.21523 0.96092 1.03287 0.97454 1.21346 0.96208 0.95539 0.99348 1.18515 0.87410 0.96598 0.92975 1.84694 1.28045 1.38351 1.80199 0.72479 0.89312 0.88808 0.90783 0.86667 0.86659 0.91567 0.90586 0.80849 0.81240 0.73957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.67 19.25 74.32 1.43 -5.24 16 2 C -0.23 -10.45 13.62 31.13 0.42 -10.03 16 3 C 0.20 9.44 4.28 84.58 0.36 9.80 16 4 N -0.47 -24.10 1.99 -649.16 -1.29 -25.39 16 5 C -0.33 -18.52 7.11 84.09 0.60 -17.93 16 6 H 0.07 4.02 7.75 -2.91 -0.02 4.00 16 7 C 0.04 2.02 5.40 84.95 0.46 2.48 16 8 N -0.89 -50.61 13.95 21.68 0.30 -50.31 16 9 Si 0.92 41.74 24.86 68.60 1.71 43.44 16 10 H -0.25 -10.64 6.91 99.48 0.69 -9.95 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.26 -11.90 7.01 99.48 0.70 -11.20 16 13 C 0.54 27.27 6.79 86.67 0.59 27.85 16 14 O -0.60 -31.23 16.31 1.72 0.03 -31.20 16 15 C -0.11 -5.05 5.02 -20.02 -0.10 -5.15 16 16 C -0.09 -4.05 8.25 22.64 0.19 -3.87 16 17 C 0.10 3.66 6.68 22.44 0.15 3.81 16 18 O -0.34 -11.18 10.49 -93.50 -0.98 -12.16 16 19 C 0.02 0.31 9.81 113.37 1.11 1.42 16 20 C -0.17 -4.53 9.02 22.40 0.20 -4.33 16 21 C -0.11 -3.06 9.97 22.33 0.22 -2.83 16 22 C 0.09 3.45 6.70 22.84 0.15 3.60 16 23 O -0.50 -18.27 12.63 -84.74 -1.07 -19.34 16 24 H 0.26 6.47 7.80 -4.43 -0.03 6.44 16 25 H 0.09 4.09 4.25 -2.39 -0.01 4.08 16 26 H 0.09 4.25 7.55 -2.39 -0.02 4.23 16 27 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.12 5.63 7.28 -2.91 -0.02 5.61 16 29 H 0.12 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.13 7.65 -2.38 -0.02 1.11 16 31 H 0.08 1.11 7.65 -2.39 -0.02 1.09 16 32 H 0.17 3.13 6.27 -2.91 -0.02 3.11 16 33 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.40 11.37 9.06 -74.05 -0.67 10.70 16 Total: -1.00 -73.26 302.93 4.93 -68.33 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.45 Total: 27.04 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 5.79 Total: -0.40 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -0.99 Total: -75.70 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -2.02 Total: -62.71 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.71 Total: 43.44 kcal Total: -73.26 4.93 -68.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.562 kcal (2) G-P(sol) polarization free energy of solvation -73.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds