Wall clock time and date at job start Mon Mar 30 2020 01:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21290 * 120.00052 * 2 1 4 4 N 1.34781 * 119.99920 * 179.97438 * 2 1 3 5 5 C 1.39834 * 124.98026 * 0.04210 * 4 2 1 6 6 C 1.39638 * 129.33233 * 359.97438 * 5 4 2 7 7 C 1.37841 * 120.28110 * 179.97438 * 6 5 4 8 8 C 1.38294 * 120.22290 * 0.02562 * 7 6 5 9 9 C 1.38229 * 119.82919 * 359.97438 * 8 7 6 10 10 C 1.38177 * 120.15050 * 0.02562 * 9 8 7 11 11 C 1.51218 * 130.97596 * 180.02562 * 10 9 8 12 12 C 1.46535 * 124.97930 * 180.02562 * 4 2 1 13 13 H 1.09000 * 110.30120 * 61.00094 * 12 4 2 14 14 C 1.50700 * 110.29648 * 298.96669 * 12 4 2 15 15 O 1.21216 * 120.00169 * 341.73079 * 14 12 4 16 16 O 1.34314 * 120.00115 * 161.45383 * 14 12 4 17 17 C 1.34921 * 116.99925 * 180.02562 * 16 14 12 18 18 H 1.07998 * 120.00168 * 359.97438 * 17 16 14 19 19 C 1.38756 * 119.99789 * 180.02562 * 17 16 14 20 20 N 1.31440 * 120.00119 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99828 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47195 * 89.99932 * 21 19 17 23 23 H 1.48501 * 109.46947 * 209.99875 * 21 19 17 24 24 H 1.48503 * 109.47131 * 329.99850 * 21 19 17 25 25 H 1.09001 * 109.46929 * 240.00672 * 1 2 3 26 26 H 1.08999 * 109.47138 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46883 * 120.00800 * 1 2 3 28 28 H 1.07998 * 119.86027 * 359.95605 * 6 5 4 29 29 H 1.08003 * 119.88285 * 180.02562 * 7 6 5 30 30 H 1.07994 * 120.08535 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.92421 * 180.02562 * 9 8 7 32 32 H 1.09000 * 110.41428 * 61.19620 * 11 10 9 33 33 H 1.09009 * 110.41158 * 298.75521 * 11 10 9 34 34 H 0.96994 * 120.00163 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5895 -2.4344 0.0002 6 6 0.2365 -2.7795 -0.0001 7 6 -0.1428 -4.1048 -0.0009 8 6 0.8145 -5.1028 -0.0008 9 6 2.1559 -4.7689 -0.0004 10 6 2.5407 -3.4418 0.0003 11 6 3.9134 -2.8074 0.0003 12 6 3.6407 -1.2945 0.0011 13 1 4.0602 -0.8334 0.8953 14 6 4.2214 -0.6582 -1.2354 15 8 3.5133 -0.4412 -2.1950 16 8 5.5224 -0.3264 -1.2722 17 6 5.9781 0.2401 -2.4088 18 1 5.3049 0.4072 -3.2365 19 6 7.3121 0.6069 -2.5146 20 7 8.1317 0.4031 -1.5074 21 14 7.9433 1.3905 -4.0885 22 1 7.8021 2.8660 -3.9980 23 1 9.3743 1.0408 -4.2762 24 1 7.1553 0.8877 -5.2424 25 1 -0.3633 -0.5137 0.8901 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 -0.5161 -2.0049 0.0005 29 1 -1.1911 -4.3645 -0.0016 30 1 0.5149 -6.1403 -0.0018 31 1 2.9048 -5.5470 -0.0008 32 1 4.4647 -3.0941 -0.8952 33 1 4.4650 -3.0946 0.8956 34 1 9.0643 0.6592 -1.5815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726661251.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:08 Heat of formation + Delta-G solvation = -66.389260 kcal Electronic energy + Delta-G solvation = -21167.459829 eV Core-core repulsion = 17838.441016 eV Total energy + Delta-G solvation = -3329.018812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30154 -38.80735 -38.53024 -36.19224 -34.89591 -33.16489 -32.12459 -29.98065 -29.67477 -29.04041 -25.63695 -23.82524 -23.20487 -21.36500 -20.73068 -19.39647 -17.78347 -17.11677 -17.08170 -16.30094 -15.89165 -15.31441 -14.80951 -14.54049 -14.34355 -14.19862 -14.17571 -13.67680 -13.48708 -12.81172 -12.59519 -12.45691 -12.36848 -12.02043 -11.76823 -11.58035 -11.53609 -11.12233 -10.79335 -10.48699 -10.41398 -10.35120 -9.90407 -9.79143 -9.05867 -8.83984 -8.56548 -7.73011 -6.40075 -4.07438 1.25653 1.31649 2.62650 2.87064 3.12477 3.20731 3.26522 3.47233 3.73185 3.97052 4.37188 4.42322 4.60042 4.77885 4.93622 5.00233 5.13712 5.17113 5.28958 5.33072 5.35865 5.44193 5.47739 5.70186 5.86960 5.92966 6.06279 6.09704 6.35803 6.39241 6.48480 6.70782 6.89877 7.40234 7.54175 7.95581 8.14438 8.69611 9.08358 9.82571 10.77678 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.005280 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.501121 B = 5301.716653 C = 5944.631545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.524 3.476 3 O -0.505 6.505 4 N -0.535 5.535 5 C 0.159 3.841 6 C -0.165 4.165 7 C -0.089 4.089 8 C -0.150 4.150 9 C -0.071 4.071 10 C -0.130 4.130 11 C -0.073 4.073 12 C 0.153 3.847 13 H 0.115 0.885 14 C 0.396 3.604 15 O -0.541 6.541 16 O -0.208 6.208 17 C -0.379 4.379 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.864 5.864 21 Si 0.944 3.056 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 -10.481 5.910 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.315 3.685 3 O -0.378 6.378 4 N -0.259 5.259 5 C 0.063 3.937 6 C -0.186 4.186 7 C -0.108 4.108 8 C -0.169 4.169 9 C -0.089 4.089 10 C -0.133 4.133 11 C -0.111 4.111 12 C 0.049 3.951 13 H 0.132 0.868 14 C 0.241 3.759 15 O -0.437 6.437 16 O -0.114 6.114 17 C -0.455 4.455 18 H 0.112 0.888 19 C -0.161 4.161 20 N -0.501 5.501 21 Si 0.768 3.232 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.191 1.191 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.869 -9.568 5.707 17.789 hybrid contribution 0.383 0.433 -0.820 1.003 sum -13.486 -9.135 4.887 17.006 Atomic orbital electron populations 1.22236 0.90992 1.05734 1.04307 1.20709 0.90601 0.82007 0.75229 1.90803 1.70599 1.30099 1.46273 1.45795 1.06204 1.04491 1.69385 1.18368 0.93584 0.84368 0.97382 1.21046 0.92922 0.97663 1.06975 1.20831 0.99511 0.91788 0.98664 1.20967 0.92533 0.99322 1.04040 1.20400 0.96283 0.93912 0.98339 1.20085 0.94686 0.93210 1.05349 1.21054 0.94702 0.90089 1.05216 1.20892 0.79400 0.96915 0.97923 0.86753 1.22851 0.83317 0.81123 0.88653 1.90561 1.61152 1.54618 1.37415 1.83846 1.22330 1.65137 1.40123 1.21218 0.94058 1.38776 0.91458 0.88769 1.25325 0.94703 0.96885 0.99177 1.69988 1.05051 1.44532 1.30550 0.85666 0.77997 0.79294 0.80196 1.19827 1.20255 1.19121 0.88758 0.88589 0.88560 0.84589 0.85549 0.85736 0.85565 0.88198 0.87802 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 8.15 36.01 0.29 -1.79 16 2 C 0.52 9.74 7.29 -10.98 -0.08 9.66 16 3 O -0.50 -11.81 16.77 5.55 0.09 -11.72 16 4 N -0.54 -9.78 2.59 -107.07 -0.28 -10.06 16 5 C 0.16 2.41 6.59 -83.57 -0.55 1.86 16 6 C -0.17 -1.93 8.88 -39.20 -0.35 -2.28 16 7 C -0.09 -0.87 10.02 -39.71 -0.40 -1.27 16 8 C -0.15 -1.47 10.06 -39.56 -0.40 -1.87 16 9 C -0.07 -0.81 10.04 -39.61 -0.40 -1.21 16 10 C -0.13 -1.88 6.23 -104.27 -0.65 -2.53 16 11 C -0.07 -1.17 6.57 -27.25 -0.18 -1.35 16 12 C 0.15 3.08 3.56 -68.68 -0.24 2.83 16 13 H 0.11 2.19 8.14 -51.93 -0.42 1.77 16 14 C 0.40 10.43 6.24 36.01 0.22 10.65 16 15 O -0.54 -15.62 15.32 -19.10 -0.29 -15.91 16 16 O -0.21 -6.19 9.75 -20.71 -0.20 -6.39 16 17 C -0.38 -11.64 9.65 30.92 0.30 -11.35 16 18 H 0.09 2.95 6.86 -52.49 -0.36 2.59 16 19 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 20 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 21 Si 0.94 21.96 29.55 -169.99 -5.02 16.93 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H 0.09 0.85 6.91 -51.93 -0.36 0.49 16 26 H 0.10 1.06 8.12 -51.93 -0.42 0.64 16 27 H 0.10 1.04 6.91 -51.93 -0.36 0.68 16 28 H 0.14 1.28 4.21 -52.49 -0.22 1.05 16 29 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.10 1.71 7.70 -51.93 -0.40 1.31 16 33 H 0.10 1.35 8.14 -51.92 -0.42 0.92 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -37.92 297.20 -6.36 -44.28 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.37 Total: 0.87 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.53 Total: 2.51 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.48 Total: -35.04 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.40 Total: -34.02 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -37.92 -6.36 -44.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726661251.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.114 kcal (2) G-P(sol) polarization free energy of solvation -37.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds