Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21290 * 120.00052 * 2 1 4 4 N 1.34781 * 119.99920 * 179.97438 * 2 1 3 5 5 C 1.39834 * 124.98026 * 0.04210 * 4 2 1 6 6 C 1.39638 * 129.33233 * 359.97438 * 5 4 2 7 7 C 1.37841 * 120.28110 * 179.97438 * 6 5 4 8 8 C 1.38294 * 120.22290 * 0.02562 * 7 6 5 9 9 C 1.38229 * 119.82919 * 359.97438 * 8 7 6 10 10 C 1.38177 * 120.15050 * 0.02562 * 9 8 7 11 11 C 1.51218 * 130.97596 * 180.02562 * 10 9 8 12 12 C 1.46535 * 124.97930 * 180.02562 * 4 2 1 13 13 H 1.09000 * 110.30120 * 61.00094 * 12 4 2 14 14 C 1.50700 * 110.29648 * 298.96669 * 12 4 2 15 15 O 1.21216 * 120.00169 * 341.73079 * 14 12 4 16 16 O 1.34314 * 120.00115 * 161.45383 * 14 12 4 17 17 C 1.34921 * 116.99925 * 180.02562 * 16 14 12 18 18 H 1.07998 * 120.00168 * 359.97438 * 17 16 14 19 19 C 1.38756 * 119.99789 * 180.02562 * 17 16 14 20 20 N 1.31440 * 120.00119 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99828 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47195 * 89.99932 * 21 19 17 23 23 H 1.48501 * 109.46947 * 209.99875 * 21 19 17 24 24 H 1.48503 * 109.47131 * 329.99850 * 21 19 17 25 25 H 1.09001 * 109.46929 * 240.00672 * 1 2 3 26 26 H 1.08999 * 109.47138 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46883 * 120.00800 * 1 2 3 28 28 H 1.07998 * 119.86027 * 359.95605 * 6 5 4 29 29 H 1.08003 * 119.88285 * 180.02562 * 7 6 5 30 30 H 1.07994 * 120.08535 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.92421 * 180.02562 * 9 8 7 32 32 H 1.09000 * 110.41428 * 61.19620 * 11 10 9 33 33 H 1.09009 * 110.41158 * 298.75521 * 11 10 9 34 34 H 0.96994 * 120.00163 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5895 -2.4344 0.0002 6 6 0.2365 -2.7795 -0.0001 7 6 -0.1428 -4.1048 -0.0009 8 6 0.8145 -5.1028 -0.0008 9 6 2.1559 -4.7689 -0.0004 10 6 2.5407 -3.4418 0.0003 11 6 3.9134 -2.8074 0.0003 12 6 3.6407 -1.2945 0.0011 13 1 4.0602 -0.8334 0.8953 14 6 4.2214 -0.6582 -1.2354 15 8 3.5133 -0.4412 -2.1950 16 8 5.5224 -0.3264 -1.2722 17 6 5.9781 0.2401 -2.4088 18 1 5.3049 0.4072 -3.2365 19 6 7.3121 0.6069 -2.5146 20 7 8.1317 0.4031 -1.5074 21 14 7.9433 1.3905 -4.0885 22 1 7.8021 2.8660 -3.9980 23 1 9.3743 1.0408 -4.2762 24 1 7.1553 0.8877 -5.2424 25 1 -0.3633 -0.5137 0.8901 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 -0.5161 -2.0049 0.0005 29 1 -1.1911 -4.3645 -0.0016 30 1 0.5149 -6.1403 -0.0018 31 1 2.9048 -5.5470 -0.0008 32 1 4.4647 -3.0941 -0.8952 33 1 4.4650 -3.0946 0.8956 34 1 9.0643 0.6592 -1.5815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726661251.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = -92.198632 kcal Electronic energy + Delta-G solvation = -21168.579007 eV Core-core repulsion = 17838.441016 eV Total energy + Delta-G solvation = -3330.137990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.63940 -40.78623 -39.86169 -37.69682 -36.83968 -34.51219 -34.26015 -31.10402 -30.67595 -30.26947 -27.71895 -25.39188 -24.28901 -22.41926 -22.37236 -20.78996 -20.02619 -19.05787 -18.32182 -17.63379 -17.21752 -16.91738 -16.53360 -16.27664 -15.96426 -15.64092 -15.28272 -15.09780 -14.75328 -14.19390 -13.84461 -13.74549 -13.63466 -13.41505 -13.34564 -13.18148 -12.98659 -12.48233 -12.39043 -12.23018 -12.12774 -11.77844 -11.67211 -11.35210 -11.03996 -10.77797 -9.73743 -8.90343 -8.61627 -6.43211 0.25763 0.43927 1.10431 1.25337 1.34587 1.46277 1.51465 1.64940 2.06639 2.52767 2.86493 2.91107 3.19668 3.38349 3.55574 3.86624 4.03583 4.18343 4.25589 4.31657 4.41559 4.42774 4.50007 4.62172 4.65329 4.75668 4.85316 5.03061 5.06548 5.13026 5.41767 5.52854 5.63387 5.73441 6.02800 6.30685 6.50445 6.78443 6.81663 7.60605 8.58345 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.005280 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.501121 B = 5301.716653 C = 5944.631545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.507 3.493 3 O -0.575 6.575 4 N -0.540 5.540 5 C 0.118 3.882 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.136 4.136 9 C -0.076 4.076 10 C -0.148 4.148 11 C -0.066 4.066 12 C 0.151 3.849 13 H 0.113 0.887 14 C 0.394 3.606 15 O -0.574 6.574 16 O -0.236 6.236 17 C -0.425 4.425 18 H 0.075 0.925 19 C 0.000 4.000 20 N -0.897 5.897 21 Si 1.019 2.981 22 H -0.262 1.262 23 H -0.251 1.251 24 H -0.264 1.264 25 H 0.132 0.868 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.160 0.840 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 -12.757 5.946 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.300 3.700 3 O -0.453 6.453 4 N -0.263 5.263 5 C 0.024 3.976 6 C -0.180 4.180 7 C -0.100 4.100 8 C -0.155 4.155 9 C -0.094 4.094 10 C -0.151 4.151 11 C -0.103 4.103 12 C 0.046 3.954 13 H 0.131 0.869 14 C 0.240 3.760 15 O -0.471 6.471 16 O -0.143 6.143 17 C -0.501 4.501 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.534 5.534 21 Si 0.837 3.163 22 H -0.187 1.187 23 H -0.174 1.174 24 H -0.188 1.188 25 H 0.150 0.850 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.177 0.823 29 H 0.185 0.815 30 H 0.179 0.821 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.028 -11.919 5.774 20.792 hybrid contribution 0.923 0.978 -0.773 1.552 sum -15.105 -10.941 5.001 19.310 Atomic orbital electron populations 1.22320 0.85638 1.07224 1.06754 1.22061 0.93207 0.81126 0.73567 1.90757 1.72352 1.32364 1.49825 1.45906 1.05144 1.06051 1.69228 1.18743 0.95415 0.82716 1.00688 1.21440 0.91597 0.99489 1.05516 1.21367 1.01642 0.90607 0.96414 1.21480 0.91534 1.01327 1.01118 1.20732 0.98026 0.92852 0.97828 1.20139 0.93099 0.94605 1.07279 1.20992 0.96559 0.87213 1.05560 1.20961 0.81220 0.99060 0.94181 0.86897 1.24173 0.82101 0.79449 0.90253 1.90499 1.61501 1.55749 1.39361 1.83865 1.24281 1.66030 1.40149 1.21385 0.95101 1.41737 0.91837 0.90724 1.26575 0.93882 0.96338 1.03300 1.70058 1.05887 1.44719 1.32752 0.84625 0.78349 0.78411 0.74880 1.18693 1.17433 1.18850 0.84956 0.87823 0.86800 0.82285 0.81474 0.82144 0.83586 0.90261 0.85032 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.15 71.24 0.58 -3.02 16 2 C 0.51 19.48 7.29 87.66 0.64 20.12 16 3 O -0.57 -28.77 16.77 -3.06 -0.05 -28.82 16 4 N -0.54 -20.33 2.59 -611.06 -1.58 -21.91 16 5 C 0.12 3.46 6.59 38.28 0.25 3.71 16 6 C -0.16 -3.17 8.88 22.51 0.20 -2.97 16 7 C -0.08 -1.17 10.02 22.19 0.22 -0.94 16 8 C -0.14 -2.00 10.06 22.28 0.22 -1.77 16 9 C -0.08 -1.52 10.04 22.25 0.22 -1.30 16 10 C -0.15 -4.15 6.23 -19.64 -0.12 -4.28 16 11 C -0.07 -2.19 6.57 30.26 0.20 -1.99 16 12 C 0.15 6.47 3.56 44.49 0.16 6.63 16 13 H 0.11 4.72 8.14 -2.39 -0.02 4.70 16 14 C 0.39 22.31 6.24 71.24 0.44 22.75 16 15 O -0.57 -35.44 15.32 20.80 0.32 -35.12 16 16 O -0.24 -15.07 9.75 14.82 0.14 -14.93 16 17 C -0.43 -27.72 9.65 67.94 0.66 -27.06 16 18 H 0.07 5.01 6.86 -2.91 -0.02 4.99 16 19 C 0.00 -0.01 5.49 84.88 0.47 0.46 16 20 N -0.90 -54.84 13.67 21.63 0.30 -54.54 16 21 Si 1.02 45.62 29.55 68.60 2.03 47.65 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 25 H 0.13 1.92 6.91 -2.39 -0.02 1.90 16 26 H 0.10 2.17 8.12 -2.39 -0.02 2.15 16 27 H 0.11 2.17 6.91 -2.39 -0.02 2.15 16 28 H 0.16 2.28 4.21 -2.91 -0.01 2.26 16 29 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 30 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 31 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.08 2.91 7.70 -2.39 -0.02 2.89 16 33 H 0.13 3.47 8.14 -2.38 -0.02 3.45 16 34 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -90.89 297.20 6.43 -84.46 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.14 Total: 12.89 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 4.14 Total: 10.32 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -1.29 Total: -76.45 kcal Atomic # 8 Polarization: -79.28 SS G_CDS: 0.41 Total: -78.87 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -90.89 6.43 -84.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726661251.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.738 kcal (2) G-P(sol) polarization free energy of solvation -90.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds