Wall clock time and date at job start Mon Mar 30 2020 01:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47086 * 2 1 4 4 C 1.50701 * 109.47330 * 240.00199 * 2 1 3 5 5 H 1.07996 * 120.00442 * 275.23604 * 4 2 1 6 6 C 1.37885 * 119.99731 * 95.23576 * 4 2 1 7 7 N 1.31519 * 119.99685 * 176.35348 * 6 4 2 8 8 Si 1.86796 * 119.99961 * 356.35029 * 6 4 2 9 9 H 1.48499 * 109.47437 * 85.78212 * 8 6 4 10 10 H 1.48512 * 109.47177 * 205.78131 * 8 6 4 11 11 H 1.48494 * 109.47468 * 325.78056 * 8 6 4 12 12 C 1.50699 * 109.47318 * 120.00188 * 2 1 3 13 13 O 1.21284 * 119.99966 * 120.00384 * 12 2 1 14 14 N 1.34775 * 119.99996 * 300.00409 * 12 2 1 15 15 C 1.46501 * 119.99906 * 179.97438 * 14 12 2 16 16 H 1.09003 * 109.64195 * 13.19312 * 15 14 12 17 17 C 1.53871 * 109.64585 * 252.76183 * 15 14 12 18 18 C 1.55053 * 106.62632 * 192.96688 * 17 15 14 19 19 S 1.83284 * 102.56244 * 42.43511 * 18 17 15 20 20 O 1.42099 * 109.35689 * 90.18752 * 19 18 17 21 21 O 1.42103 * 109.35200 * 223.25605 * 19 18 17 22 22 C 1.54167 * 109.64423 * 133.48877 * 15 14 12 23 23 H 1.09003 * 110.31491 * 266.66215 * 22 15 14 24 24 C 1.52994 * 110.32348 * 28.85638 * 22 15 14 25 25 H 1.08995 * 109.47398 * 297.59656 * 1 2 3 26 26 H 1.09005 * 109.47162 * 57.60244 * 1 2 3 27 27 H 1.09004 * 109.46692 * 177.60065 * 1 2 3 28 28 H 0.96998 * 119.99346 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99799 * 359.97438 * 14 12 2 30 30 H 1.09007 * 110.02906 * 312.26004 * 17 15 14 31 31 H 1.09005 * 110.02971 * 73.62903 * 17 15 14 32 32 H 1.08993 * 110.78932 * 160.69977 * 18 17 15 33 33 H 1.08992 * 110.78539 * 284.16807 * 18 17 15 34 34 H 1.09003 * 109.47180 * 56.62588 * 24 22 15 35 35 H 1.08992 * 109.47365 * 176.63069 * 24 22 15 36 36 H 1.09005 * 109.46974 * 296.63375 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1320 -1.7857 -1.2304 6 6 2.3649 0.0127 -2.3564 7 7 2.8708 -0.5990 -3.4051 8 14 2.0968 1.8610 -2.3924 9 1 3.2750 2.5438 -1.7999 10 1 1.9203 2.3084 -3.7975 11 1 0.8821 2.2004 -1.6086 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7067 -0.2501 2.4545 15 6 2.1947 -0.9411 3.6507 16 1 2.9791 -1.6451 3.3728 17 6 1.0343 -1.6974 4.3207 18 6 1.5321 -2.1173 5.7278 19 16 2.4124 -0.6162 6.3035 20 8 1.5019 0.2276 6.9950 21 8 3.6349 -0.9950 6.9210 22 6 2.7567 0.0886 4.6510 23 1 3.8304 0.2090 4.5070 24 6 2.0436 1.4323 4.4875 25 1 -0.3634 0.4760 0.9107 26 1 -0.3634 0.5506 -0.8677 27 1 -0.3633 -1.0268 -0.0430 28 1 3.1051 -0.0902 -4.1970 29 1 1.1493 0.5387 2.5435 30 1 0.1660 -1.0446 4.4113 31 1 0.7774 -2.5808 3.7360 32 1 0.6918 -2.3479 6.3826 33 1 2.2149 -2.9640 5.6598 34 1 0.9700 1.2916 4.6130 35 1 2.4088 2.1314 5.2397 36 1 2.2439 1.8312 3.4930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330966153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:13 Heat of formation + Delta-G solvation = -110.475522 kcal Electronic energy + Delta-G solvation = -20081.230341 eV Core-core repulsion = 16885.743757 eV Total energy + Delta-G solvation = -3195.486584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.59682 -37.35518 -36.94977 -36.21881 -33.77442 -32.77207 -31.98696 -31.05962 -26.63240 -25.32074 -24.20207 -22.93081 -20.71845 -19.64474 -18.94292 -17.29668 -17.13947 -16.61156 -16.42824 -15.76320 -15.50278 -14.65232 -14.39870 -14.16196 -14.00080 -13.38435 -13.20721 -13.06722 -12.67323 -12.49253 -12.41239 -12.27415 -12.21729 -12.15410 -11.62837 -11.55769 -11.30411 -11.20838 -10.86704 -10.72880 -10.43858 -10.31791 -9.88189 -9.26397 -8.85434 -8.79991 -8.63210 -6.13323 -4.13432 -0.20477 2.26595 3.17659 3.24846 3.27449 3.30329 3.41839 3.50898 3.85000 4.07830 4.31606 4.35935 4.43317 4.53470 4.72162 4.95401 5.15578 5.23388 5.34374 5.36465 5.51241 5.58811 5.75327 5.84554 5.95689 6.03610 6.27550 6.42428 6.70708 6.76247 7.07999 7.45704 7.96798 8.45048 8.97385 9.01777 9.45484 10.99832 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.004652 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.079247 B = 6017.894555 C = 6218.754169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.002 4.002 3 H 0.054 0.946 4 C -0.498 4.498 5 H 0.086 0.914 6 C 0.072 3.928 7 N -0.893 5.893 8 Si 0.871 3.129 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.521 3.479 13 O -0.525 6.525 14 N -0.737 5.737 15 C 0.149 3.851 16 H 0.118 0.882 17 C -0.131 4.131 18 C -0.584 4.584 19 S 2.388 3.612 20 O -0.933 6.933 21 O -0.940 6.940 22 C -0.567 4.567 23 H 0.148 0.852 24 C -0.134 4.134 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.265 0.735 29 H 0.399 0.601 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 2.689 17.695 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.072 0.928 4 C -0.536 4.536 5 H 0.104 0.896 6 C -0.130 4.130 7 N -0.530 5.530 8 Si 0.698 3.302 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.310 3.690 13 O -0.398 6.398 14 N -0.392 5.392 15 C 0.041 3.959 16 H 0.136 0.864 17 C -0.171 4.171 18 C -0.715 4.715 19 S 2.571 3.429 20 O -0.930 6.930 21 O -0.937 6.937 22 C -0.677 4.677 23 H 0.166 0.834 24 C -0.192 4.192 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.235 0.765 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.312 2.307 18.279 18.922 hybrid contribution -0.429 1.051 -0.882 1.438 sum -4.741 3.359 17.397 18.342 Atomic orbital electron populations 1.22004 0.96756 1.01283 0.99426 1.19298 0.93997 0.96923 0.92215 0.92779 1.20721 1.43090 0.96159 0.93617 0.89630 1.25031 0.94306 0.98007 0.95678 1.69888 1.42167 1.36181 1.04765 0.86987 0.79200 0.86403 0.77644 1.20213 1.21196 1.18737 1.21900 0.78672 0.84509 0.83949 1.90590 1.36701 1.26230 1.86264 1.46409 1.55496 1.32620 1.04710 1.21216 0.96688 0.92328 0.85653 0.86398 1.22640 0.99119 1.02780 0.92557 1.30558 1.14302 1.19465 1.07148 1.09246 0.76409 0.78940 0.78345 1.93601 1.64451 1.64847 1.70088 1.93612 1.43894 1.82684 1.73472 1.30662 1.10517 1.06357 1.20209 0.83423 1.21487 1.00540 0.92701 1.04448 0.95475 0.92439 0.92906 0.92474 0.76460 0.89265 0.87823 0.84336 0.84211 0.90717 0.90958 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.98 37.16 0.33 -2.16 16 2 C 0.00 -0.05 2.23 -92.92 -0.21 -0.26 16 3 H 0.05 1.13 5.66 -51.93 -0.29 0.84 16 4 C -0.50 -13.70 8.36 -34.44 -0.29 -13.98 16 5 H 0.09 2.69 7.62 -52.49 -0.40 2.29 16 6 C 0.07 2.01 5.47 -17.81 -0.10 1.91 16 7 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 8 Si 0.87 20.12 26.46 -169.99 -4.50 15.62 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.26 -5.53 6.36 56.52 0.36 -5.17 16 12 C 0.52 10.39 7.15 -10.99 -0.08 10.31 16 13 O -0.52 -12.60 15.15 5.55 0.08 -12.51 16 14 N -0.74 -10.29 4.32 -52.77 -0.23 -10.52 16 15 C 0.15 1.71 3.01 -66.87 -0.20 1.51 16 16 H 0.12 1.55 7.02 -51.93 -0.36 1.19 16 17 C -0.13 -1.17 6.10 -25.19 -0.15 -1.33 16 18 C -0.58 -4.23 7.31 38.24 0.28 -3.96 16 19 S 2.39 22.52 5.96 -107.50 -0.64 21.88 16 20 O -0.93 -11.05 17.25 -57.73 -1.00 -12.04 16 21 O -0.94 -12.18 18.15 -57.73 -1.05 -13.23 16 22 C -0.57 -5.35 3.76 -26.12 -0.10 -5.45 16 23 H 0.15 1.31 8.14 -51.93 -0.42 0.89 16 24 C -0.13 -1.16 7.43 37.15 0.28 -0.89 16 25 H 0.03 0.38 7.50 -51.93 -0.39 -0.01 16 26 H 0.06 1.08 7.10 -51.93 -0.37 0.71 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.40 4.51 6.12 -40.82 -0.25 4.26 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.56 8.01 -51.93 -0.42 0.14 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.74 7.07 -51.93 -0.37 0.38 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -36.68 303.02 -7.21 -43.89 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.99 Total: 2.75 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.23 Total: -14.29 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.55 Total: -36.63 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.96 Total: -37.79 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.50 Total: 15.62 kcal Atomic # 16 Polarization: 22.52 SS G_CDS: -0.64 Total: 21.88 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.68 -7.21 -43.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330966153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.585 kcal (2) G-P(sol) polarization free energy of solvation -36.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds