Wall clock time and date at job start Mon Mar 30 2020 01:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47086 * 2 1 4 4 C 1.50701 * 109.47330 * 240.00199 * 2 1 3 5 5 H 1.07996 * 120.00442 * 275.23604 * 4 2 1 6 6 C 1.37885 * 119.99731 * 95.23576 * 4 2 1 7 7 N 1.31519 * 119.99685 * 176.35348 * 6 4 2 8 8 Si 1.86796 * 119.99961 * 356.35029 * 6 4 2 9 9 H 1.48499 * 109.47437 * 85.78212 * 8 6 4 10 10 H 1.48512 * 109.47177 * 205.78131 * 8 6 4 11 11 H 1.48494 * 109.47468 * 325.78056 * 8 6 4 12 12 C 1.50699 * 109.47318 * 120.00188 * 2 1 3 13 13 O 1.21284 * 119.99966 * 120.00384 * 12 2 1 14 14 N 1.34775 * 119.99996 * 300.00409 * 12 2 1 15 15 C 1.46501 * 119.99906 * 179.97438 * 14 12 2 16 16 H 1.09003 * 109.64195 * 13.19312 * 15 14 12 17 17 C 1.53871 * 109.64585 * 252.76183 * 15 14 12 18 18 C 1.55053 * 106.62632 * 192.96688 * 17 15 14 19 19 S 1.83284 * 102.56244 * 42.43511 * 18 17 15 20 20 O 1.42099 * 109.35689 * 90.18752 * 19 18 17 21 21 O 1.42103 * 109.35200 * 223.25605 * 19 18 17 22 22 C 1.54167 * 109.64423 * 133.48877 * 15 14 12 23 23 H 1.09003 * 110.31491 * 266.66215 * 22 15 14 24 24 C 1.52994 * 110.32348 * 28.85638 * 22 15 14 25 25 H 1.08995 * 109.47398 * 297.59656 * 1 2 3 26 26 H 1.09005 * 109.47162 * 57.60244 * 1 2 3 27 27 H 1.09004 * 109.46692 * 177.60065 * 1 2 3 28 28 H 0.96998 * 119.99346 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99799 * 359.97438 * 14 12 2 30 30 H 1.09007 * 110.02906 * 312.26004 * 17 15 14 31 31 H 1.09005 * 110.02971 * 73.62903 * 17 15 14 32 32 H 1.08993 * 110.78932 * 160.69977 * 18 17 15 33 33 H 1.08992 * 110.78539 * 284.16807 * 18 17 15 34 34 H 1.09003 * 109.47180 * 56.62588 * 24 22 15 35 35 H 1.08992 * 109.47365 * 176.63069 * 24 22 15 36 36 H 1.09005 * 109.46974 * 296.63375 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1320 -1.7857 -1.2304 6 6 2.3649 0.0127 -2.3564 7 7 2.8708 -0.5990 -3.4051 8 14 2.0968 1.8610 -2.3924 9 1 3.2750 2.5438 -1.7999 10 1 1.9203 2.3084 -3.7975 11 1 0.8821 2.2004 -1.6086 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7067 -0.2501 2.4545 15 6 2.1947 -0.9411 3.6507 16 1 2.9791 -1.6451 3.3728 17 6 1.0343 -1.6974 4.3207 18 6 1.5321 -2.1173 5.7278 19 16 2.4124 -0.6162 6.3035 20 8 1.5019 0.2276 6.9950 21 8 3.6349 -0.9950 6.9210 22 6 2.7567 0.0886 4.6510 23 1 3.8304 0.2090 4.5070 24 6 2.0436 1.4323 4.4875 25 1 -0.3634 0.4760 0.9107 26 1 -0.3634 0.5506 -0.8677 27 1 -0.3633 -1.0268 -0.0430 28 1 3.1051 -0.0902 -4.1970 29 1 1.1493 0.5387 2.5435 30 1 0.1660 -1.0446 4.4113 31 1 0.7774 -2.5808 3.7360 32 1 0.6918 -2.3479 6.3826 33 1 2.2149 -2.9640 5.6598 34 1 0.9700 1.2916 4.6130 35 1 2.4088 2.1314 5.2397 36 1 2.2439 1.8312 3.4930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330966153.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:13 Heat of formation + Delta-G solvation = -140.893065 kcal Electronic energy + Delta-G solvation = -20082.549345 eV Core-core repulsion = 16885.743757 eV Total energy + Delta-G solvation = -3196.805588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95969 -38.36336 -37.97638 -37.08849 -35.62764 -34.08542 -33.07330 -32.53823 -27.54624 -27.14913 -25.05524 -24.31491 -21.82349 -21.03789 -19.74025 -19.08981 -18.32580 -17.61515 -17.46297 -16.87815 -16.64222 -16.09802 -15.91088 -15.19504 -15.00545 -14.73299 -14.39971 -14.21072 -14.03279 -13.69525 -13.34374 -13.23213 -13.10835 -13.06830 -13.00115 -12.95372 -12.51840 -12.37930 -12.11619 -12.07589 -11.74056 -11.66504 -11.24265 -11.11477 -10.74698 -10.44802 -10.07507 -8.25972 -6.32664 -0.96132 1.37492 1.39713 1.50433 1.52070 1.87513 2.30529 2.37003 2.58316 3.03410 3.12807 3.25951 3.62189 3.66514 3.78787 4.02170 4.18620 4.31887 4.43347 4.52557 4.71100 4.73957 4.76016 4.83804 4.86172 4.95362 5.04412 5.17109 5.23127 5.52087 5.54441 5.61535 6.25848 6.66091 6.84712 7.29143 7.51113 8.92030 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.004652 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.079247 B = 6017.894555 C = 6218.754169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.010 4.010 3 H 0.072 0.928 4 C -0.506 4.506 5 H 0.022 0.978 6 C 0.003 3.997 7 N -0.954 5.954 8 Si 0.945 3.055 9 H -0.269 1.269 10 H -0.290 1.290 11 H -0.218 1.218 12 C 0.523 3.477 13 O -0.579 6.579 14 N -0.711 5.711 15 C 0.141 3.859 16 H 0.096 0.904 17 C -0.131 4.131 18 C -0.564 4.564 19 S 2.405 3.595 20 O -0.953 6.953 21 O -0.979 6.979 22 C -0.561 4.561 23 H 0.149 0.851 24 C -0.144 4.144 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.266 0.734 29 H 0.417 0.583 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.168 0.832 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 5.022 19.983 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.032 4.032 3 H 0.089 0.911 4 C -0.544 4.544 5 H 0.041 0.959 6 C -0.193 4.193 7 N -0.594 5.594 8 Si 0.767 3.233 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.140 1.140 12 C 0.311 3.689 13 O -0.457 6.457 14 N -0.367 5.367 15 C 0.033 3.967 16 H 0.114 0.886 17 C -0.170 4.170 18 C -0.696 4.696 19 S 2.590 3.410 20 O -0.950 6.950 21 O -0.976 6.976 22 C -0.672 4.672 23 H 0.166 0.834 24 C -0.202 4.202 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.257 0.743 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.186 0.814 33 H 0.169 0.831 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.538 4.690 20.655 22.167 hybrid contribution 0.268 0.194 -1.547 1.582 sum -6.270 4.884 19.108 20.694 Atomic orbital electron populations 1.21882 0.93552 1.01351 1.02054 1.19303 0.96422 0.96929 0.90505 0.91067 1.20911 1.43085 0.93805 0.96626 0.95942 1.26106 0.93843 1.04498 0.94837 1.70092 1.44562 1.38834 1.05916 0.85801 0.81047 0.78333 0.78100 1.19419 1.21634 1.14037 1.21484 0.78200 0.83773 0.85409 1.90583 1.39305 1.28625 1.87221 1.45997 1.54382 1.32649 1.03664 1.21412 0.97487 0.92649 0.85103 0.88625 1.22636 0.98711 1.02773 0.92912 1.30476 1.15028 1.17916 1.06209 1.08650 0.75422 0.79173 0.77707 1.93570 1.64538 1.66106 1.70816 1.93564 1.46042 1.83359 1.74637 1.30610 1.10810 1.06480 1.19286 0.83357 1.21640 1.01637 0.92092 1.04842 0.90142 0.92624 0.94060 0.92542 0.74332 0.86676 0.88318 0.81386 0.83097 0.88936 0.90038 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 8.98 71.98 0.65 -3.71 16 2 C -0.01 -0.41 2.23 -12.29 -0.03 -0.44 16 3 H 0.07 2.74 5.66 -2.38 -0.01 2.73 16 4 C -0.51 -28.84 8.36 25.60 0.21 -28.62 16 5 H 0.02 1.51 7.62 -2.91 -0.02 1.49 16 6 C 0.00 0.20 5.47 84.66 0.46 0.66 16 7 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 8 Si 0.95 40.76 26.46 68.60 1.82 42.57 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.22 -7.80 6.36 99.48 0.63 -7.17 16 12 C 0.52 20.52 7.15 87.66 0.63 21.15 16 13 O -0.58 -28.85 15.15 -3.04 -0.05 -28.90 16 14 N -0.71 -18.03 4.32 -439.26 -1.90 -19.93 16 15 C 0.14 2.95 3.01 45.68 0.14 3.09 16 16 H 0.10 2.51 7.02 -2.39 -0.02 2.49 16 17 C -0.13 -1.91 6.10 31.59 0.19 -1.72 16 18 C -0.56 -6.26 7.31 72.69 0.53 -5.73 16 19 S 2.40 39.94 5.96 -56.49 -0.34 39.60 16 20 O -0.95 -19.91 17.25 -127.47 -2.20 -22.11 16 21 O -0.98 -24.35 18.15 -127.47 -2.31 -26.66 16 22 C -0.56 -9.34 3.76 30.99 0.12 -9.23 16 23 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 24 C -0.14 -2.01 7.43 71.98 0.53 -1.47 16 25 H 0.08 1.83 7.50 -2.39 -0.02 1.81 16 26 H 0.05 1.88 7.10 -2.38 -0.02 1.87 16 27 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.42 7.57 6.12 -92.71 -0.57 7.01 16 30 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.17 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 0.96 8.01 -2.39 -0.02 0.94 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.18 7.07 -2.38 -0.02 1.16 16 Total: -1.00 -85.85 303.02 -0.79 -86.64 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.45 Total: 14.73 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 3.43 Total: -26.02 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.60 Total: -79.85 kcal Atomic # 8 Polarization: -73.12 SS G_CDS: -4.56 Total: -77.67 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.82 Total: 42.57 kcal Atomic # 16 Polarization: 39.94 SS G_CDS: -0.34 Total: 39.60 kcal Total: -85.85 -0.79 -86.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330966153.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.254 kcal (2) G-P(sol) polarization free energy of solvation -85.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds