Wall clock time and date at job start Mon Mar 30 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30769 * 1 3 3 Si 1.86804 * 120.00264 * 2 1 4 4 H 1.48500 * 109.46713 * 270.00215 * 3 2 1 5 5 H 1.48503 * 109.46759 * 29.99701 * 3 2 1 6 6 H 1.48492 * 109.47314 * 149.99715 * 3 2 1 7 7 C 1.40073 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99915 * 163.94508 * 7 2 1 9 9 C 1.40840 * 119.99652 * 343.95145 * 7 2 1 10 10 C 1.40763 * 120.33795 * 333.33312 * 9 7 2 11 11 C 1.36413 * 119.99293 * 180.25952 * 10 9 7 12 12 C 1.38961 * 120.69345 * 359.74409 * 11 10 9 13 13 C 1.38037 * 120.68499 * 359.97438 * 12 11 10 14 14 C 1.39233 * 119.98140 * 0.02562 * 13 12 11 15 15 C 1.47778 * 120.34408 * 179.97438 * 14 13 12 16 16 C 1.40682 * 119.71129 * 130.00039 * 15 14 13 17 17 C 1.35801 * 120.88201 * 179.97438 * 16 15 14 18 18 C 1.40460 * 119.85488 * 0.02562 * 17 16 15 19 19 C 1.40584 * 121.97853 * 180.02562 * 18 17 16 20 20 C 1.36268 * 118.73947 * 179.97438 * 19 18 17 21 21 N 1.32585 * 121.90506 * 359.97438 * 20 19 18 22 22 C 1.31241 * 122.73038 * 0.04765 * 21 20 19 23 23 C 1.40572 * 119.88427 * 359.95323 * 22 21 20 24 24 C 1.38712 * 119.70217 * 309.99803 * 15 14 13 25 25 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00517 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.65299 * 179.76650 * 11 10 9 28 28 H 1.07997 * 119.65502 * 180.02562 * 12 11 10 29 29 H 1.07999 * 120.01569 * 180.02562 * 13 12 11 30 30 H 1.08000 * 119.56000 * 359.97438 * 16 15 14 31 31 H 1.07994 * 120.07392 * 180.02562 * 17 16 15 32 32 H 1.08008 * 120.63227 * 359.97438 * 19 18 17 33 33 H 1.08000 * 119.04634 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.05941 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.35182 * 0.28072 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4892 2.0463 -1.4001 5 1 1.4392 2.6527 0.7000 6 1 3.5392 1.4402 0.7000 7 6 2.0081 -1.2131 0.0005 8 1 3.0564 -1.2314 -0.2581 9 6 1.3450 -2.4088 0.3383 10 6 0.2189 -2.3833 1.1825 11 6 -0.4148 -3.5463 1.5094 12 6 0.0358 -4.7634 1.0128 13 6 1.1337 -4.8207 0.1781 14 6 1.8019 -3.6509 -0.1738 15 6 2.9785 -3.7030 -1.0664 16 6 3.0444 -2.8506 -2.1837 17 6 4.1145 -2.8782 -3.0193 18 6 5.1729 -3.7675 -2.7708 19 6 6.3020 -3.8330 -3.6059 20 6 7.2907 -4.7202 -3.3025 21 7 7.2164 -5.5182 -2.2463 22 6 6.1940 -5.5127 -1.4234 23 6 5.1197 -4.6340 -1.6469 24 6 4.0083 -4.5918 -0.7951 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1411 -1.4436 1.5745 27 1 -1.2760 -3.5207 2.1606 28 1 -0.4789 -5.6739 1.2821 29 1 1.4744 -5.7724 -0.2019 30 1 2.2330 -2.1652 -2.3795 31 1 4.1517 -2.2178 -3.8730 32 1 6.3841 -3.1923 -4.4716 33 1 8.1601 -4.7750 -3.9409 34 1 6.1781 -6.1820 -0.5759 35 1 3.9517 -5.2476 0.0612 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241675708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:19 Heat of formation + Delta-G solvation = 59.958384 kcal Electronic energy + Delta-G solvation = -19635.450666 eV Core-core repulsion = 16755.052713 eV Total energy + Delta-G solvation = -2880.397953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.101 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30528 -38.09186 -36.36867 -33.88101 -32.69854 -31.42255 -29.93189 -29.68255 -27.94990 -25.45957 -23.81157 -23.01074 -21.93993 -20.82068 -20.20717 -17.49567 -17.40208 -16.57395 -16.06439 -15.39069 -14.75210 -14.56291 -14.10005 -13.91719 -13.61766 -13.36345 -13.09812 -13.04943 -12.70757 -12.04889 -11.81230 -11.58366 -11.32956 -11.24911 -11.14125 -10.94190 -10.68053 -10.53542 -9.89206 -9.67857 -9.62624 -9.35367 -9.16685 -8.51965 -7.85691 -7.55311 -7.21832 -6.91743 -4.52683 0.75132 1.34611 2.29855 2.66092 2.84059 2.97073 3.01427 3.11775 3.60452 3.78938 4.46160 4.53603 4.67454 4.93208 5.17974 5.23526 5.42072 5.45604 5.62454 5.73355 5.84784 5.93781 6.10169 6.19903 6.26953 6.28419 6.42619 6.54518 6.64986 6.85671 6.93774 6.98980 7.04130 7.12030 7.26736 7.39973 7.42599 7.75502 7.87612 7.95542 8.09352 8.25537 8.43614 8.67430 8.77483 9.97061 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.006289 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.943891 B = 4451.445875 C = 5778.520485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.132 3.868 10 C -0.157 4.157 11 C -0.099 4.099 12 C -0.242 4.242 13 C -0.068 4.068 14 C -0.198 4.198 15 C 0.035 3.965 16 C -0.059 4.059 17 C -0.134 4.134 18 C -0.040 4.040 19 C -0.151 4.151 20 C 0.051 3.949 21 N -0.499 5.499 22 C 0.135 3.865 23 C -0.098 4.098 24 C -0.124 4.124 25 H 0.284 0.716 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -2.826 -3.628 7.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.101 0.899 9 C 0.129 3.871 10 C -0.176 4.176 11 C -0.118 4.118 12 C -0.261 4.261 13 C -0.086 4.086 14 C -0.199 4.199 15 C 0.035 3.965 16 C -0.078 4.078 17 C -0.152 4.152 18 C -0.045 4.045 19 C -0.170 4.170 20 C -0.092 4.092 21 N -0.207 5.207 22 C -0.036 4.036 23 C -0.100 4.100 24 C -0.144 4.144 25 H 0.095 0.905 26 H 0.136 0.864 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.174 0.826 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.172 -3.169 -3.619 7.825 hybrid contribution -0.502 1.465 -0.195 1.560 sum 5.670 -1.704 -3.814 7.043 Atomic orbital electron populations 1.69780 1.07645 1.29687 1.33704 1.25956 0.94714 1.01416 0.92139 0.86356 0.80834 0.80485 0.79543 1.19230 1.19896 1.18256 1.19584 0.97728 0.90808 1.39734 0.89920 1.17518 0.90482 0.90931 0.88135 1.21052 0.98947 0.97014 1.00567 1.20511 0.98528 0.93382 0.99368 1.20295 1.01810 0.96388 1.07608 1.20586 0.95514 0.95518 0.96968 1.18584 1.00666 0.94188 1.06489 1.18911 0.92978 0.92088 0.92557 1.21367 0.97631 0.96537 0.92311 1.20802 0.94033 0.99535 1.00806 1.18146 0.95135 0.96432 0.94768 1.21818 0.94533 1.00440 1.00256 1.21953 0.98565 0.93669 0.95019 1.67334 1.26028 1.22951 1.04370 1.23111 0.88250 0.95367 0.96905 1.18923 0.96811 0.98019 0.96293 1.21317 0.92525 1.01135 0.99388 0.90507 0.86376 0.89358 0.89280 0.89059 0.84629 0.85935 0.85296 0.83934 0.82595 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.71 10.99 55.55 0.61 -18.09 16 2 C 0.08 1.79 5.16 -17.32 -0.09 1.70 16 3 Si 0.90 17.61 29.59 -169.99 -5.03 12.58 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -10.88 7.09 -37.91 -0.27 -11.15 16 8 H 0.08 1.99 6.66 -52.49 -0.35 1.64 16 9 C 0.13 3.24 5.55 -106.55 -0.59 2.65 16 10 C -0.16 -3.81 8.62 -39.29 -0.34 -4.14 16 11 C -0.10 -2.20 9.96 -39.97 -0.40 -2.60 16 12 C -0.24 -5.12 10.03 -39.39 -0.40 -5.51 16 13 C -0.07 -1.44 9.48 -39.29 -0.37 -1.81 16 14 C -0.20 -4.46 5.50 -104.22 -0.57 -5.03 16 15 C 0.03 0.71 4.92 -104.90 -0.52 0.19 16 16 C -0.06 -1.14 7.90 -39.53 -0.31 -1.46 16 17 C -0.13 -2.26 9.77 -39.62 -0.39 -2.64 16 18 C -0.04 -0.67 5.75 -106.73 -0.61 -1.28 16 19 C -0.15 -2.16 9.87 -39.41 -0.39 -2.55 16 20 C 0.05 0.73 11.07 -17.94 -0.20 0.53 16 21 N -0.50 -7.91 10.30 -13.10 -0.13 -8.04 16 22 C 0.13 2.09 11.05 -16.92 -0.19 1.90 16 23 C -0.10 -1.69 5.74 -106.87 -0.61 -2.30 16 24 C -0.12 -2.24 9.28 -38.71 -0.36 -2.60 16 25 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 26 H 0.12 2.95 6.25 -52.49 -0.33 2.62 16 27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 29 H 0.09 1.72 8.03 -52.49 -0.42 1.30 16 30 H 0.14 2.75 7.29 -52.49 -0.38 2.36 16 31 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 33 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.16 1.97 8.06 -52.48 -0.42 1.55 16 35 H 0.13 2.09 8.02 -52.49 -0.42 1.66 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -26.14 301.83 -10.18 -36.32 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.57 Total: 8.81 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: -6.60 Total: -36.11 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.48 Total: -26.14 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.14 -10.18 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241675708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.279 kcal (2) G-P(sol) polarization free energy of solvation -26.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds