Wall clock time and date at job start Mon Mar 30 2020 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.70504 * 2 1 4 4 C 1.53185 * 109.58699 * 120.35661 * 2 1 3 5 5 C 1.53040 * 109.31595 * 174.41922 * 4 2 1 6 6 C 1.53074 * 109.65714 * 298.70416 * 5 4 2 7 7 C 1.53183 * 109.30110 * 61.14757 * 6 5 4 8 8 N 1.46924 * 108.89286 * 305.58106 * 7 6 5 9 9 S 1.65599 * 120.63027 * 233.55374 * 8 7 6 10 10 O 1.42097 * 104.27895 * 13.42819 * 9 8 7 11 11 O 1.42106 * 104.27285 * 141.28173 * 9 8 7 12 12 C 1.81398 * 104.45084 * 257.35234 * 9 8 7 13 13 C 1.52998 * 109.46954 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.47246 * 180.02562 * 13 12 9 15 15 C 1.50695 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99654 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46953 * 89.99975 * 19 17 15 21 21 H 1.48495 * 109.47071 * 210.00042 * 19 17 15 22 22 H 1.48501 * 109.47224 * 330.00428 * 19 17 15 23 23 H 1.08994 * 109.47360 * 189.20709 * 1 2 3 24 24 H 1.09007 * 109.46802 * 309.21133 * 1 2 3 25 25 H 1.09000 * 109.47137 * 69.20384 * 1 2 3 26 26 H 1.08998 * 109.50280 * 294.37025 * 4 2 1 27 27 H 1.09005 * 109.50215 * 54.43881 * 4 2 1 28 28 H 1.09001 * 109.46221 * 58.65391 * 5 4 2 29 29 H 1.09000 * 109.46615 * 178.61570 * 5 4 2 30 30 H 1.09008 * 109.38878 * 301.26708 * 6 5 4 31 31 H 1.08999 * 109.62351 * 181.17246 * 6 5 4 32 32 H 1.09001 * 109.58910 * 185.72069 * 7 6 5 33 33 H 1.09004 * 109.58542 * 65.43436 * 7 6 5 34 34 H 1.09002 * 109.47464 * 299.99905 * 12 9 8 35 35 H 1.08997 * 109.46930 * 60.00036 * 12 9 8 36 36 H 1.08999 * 109.47404 * 299.99735 * 13 12 9 37 37 H 1.08997 * 109.47470 * 60.00125 * 13 12 9 38 38 H 1.08997 * 109.47166 * 300.00203 * 14 13 12 39 39 H 1.08997 * 109.46833 * 59.99674 * 14 13 12 40 40 H 0.97007 * 119.99736 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5675 -0.8481 1.1701 6 6 3.9601 -1.6642 -0.0640 7 6 3.4650 -0.9471 -1.3238 8 7 2.0225 -0.6996 -1.1945 9 16 0.9717 -1.2001 -2.3725 10 8 1.7397 -2.0882 -3.1729 11 8 -0.1662 -1.6584 -1.6552 12 6 0.5759 0.3095 -3.2971 13 6 -0.4000 -0.0256 -4.4268 14 6 -0.7335 1.2476 -5.2071 15 6 -1.6952 0.9177 -6.3194 16 1 -2.0344 -0.0985 -6.4564 17 6 -2.1414 1.9130 -7.1629 18 7 -1.7280 3.1503 -6.9963 19 14 -3.3329 1.5040 -8.5421 20 1 -4.7269 1.6402 -8.0486 21 1 -3.1160 2.4372 -9.6767 22 1 -3.1032 0.1093 -8.9974 23 1 -0.3634 -1.0143 0.1644 24 1 -0.3633 0.6497 0.7963 25 1 -0.3633 0.3649 -0.9607 26 1 1.7661 -0.1669 2.1368 27 1 1.6026 -1.7252 1.2916 28 1 4.0062 0.1472 1.0992 29 1 3.9379 -1.3449 2.0668 30 1 3.5036 -2.6523 -0.0046 31 1 5.0445 -1.7660 -0.1057 32 1 3.6518 -1.5719 -2.1972 33 1 3.9900 0.0018 -1.4343 34 1 0.1187 1.0371 -2.6264 35 1 1.4900 0.7278 -3.7183 36 1 0.0567 -0.7532 -5.0976 37 1 -1.3141 -0.4437 -4.0053 38 1 -1.1900 1.9756 -4.5366 39 1 0.1807 1.6653 -5.6287 40 1 -2.0421 3.8506 -7.5895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:21 Heat of formation + Delta-G solvation = -88.646284 kcal Electronic energy + Delta-G solvation = -20309.961438 eV Core-core repulsion = 17251.254535 eV Total energy + Delta-G solvation = -3058.706903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.92300 -37.10570 -35.70830 -34.67775 -33.03508 -32.27962 -32.13502 -27.84282 -27.28470 -24.39939 -23.55116 -22.34094 -20.73351 -20.40222 -18.65135 -17.09172 -16.66531 -16.37234 -15.75241 -15.29493 -14.69784 -14.52710 -14.45037 -14.17037 -13.99308 -13.67855 -12.89287 -12.59350 -12.50794 -12.28234 -12.22365 -11.85138 -11.75696 -11.64398 -11.40368 -11.23982 -11.12376 -10.91827 -10.86399 -10.79237 -10.76645 -10.38453 -10.24478 -9.94117 -9.47268 -9.21041 -8.86724 -8.40661 -6.05568 -4.08630 0.47982 2.76920 3.30596 3.36645 3.40872 4.02190 4.35428 4.37991 4.43063 4.60103 4.70866 4.90267 4.94688 5.12781 5.16516 5.18268 5.26149 5.30922 5.47890 5.52338 5.54988 5.65878 5.73258 5.75468 5.86691 5.89122 5.97935 6.10411 6.18140 6.26581 6.42378 6.50574 6.62128 6.87682 7.57161 7.67097 7.92467 8.33049 8.97589 9.56067 11.05672 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.038227 B = 0.003971 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.284551 B = 7049.563354 C = 7165.722487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.153 3.847 3 H 0.073 0.927 4 C -0.127 4.127 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.114 3.886 8 N -1.001 6.001 9 S 2.597 3.403 10 O -0.965 6.965 11 O -0.957 6.957 12 C -0.612 4.612 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.026 -5.540 17.123 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.047 3.953 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.171 4.171 7 C -0.011 4.011 8 N -0.839 5.839 9 S 2.696 3.304 10 O -0.956 6.956 11 O -0.947 6.947 12 C -0.743 4.743 13 C -0.144 4.144 14 C -0.008 4.008 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 H 0.120 0.880 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.735 -6.271 16.932 21.006 hybrid contribution -0.498 0.753 -0.865 1.250 sum 10.237 -5.518 16.068 19.835 Atomic orbital electron populations 1.22755 0.93027 1.05864 1.02892 1.20990 0.94369 0.95408 0.84555 0.90849 1.21927 0.95908 1.01558 0.97184 1.21491 0.95852 1.00394 0.97811 1.21866 1.00807 0.99608 0.94795 1.21449 0.79662 1.00572 0.99401 1.57916 1.17923 1.74566 1.33463 1.05447 0.73752 0.77326 0.73879 1.93518 1.70189 1.61722 1.70158 1.93612 1.51563 1.79920 1.69598 1.30674 1.10468 1.20480 1.12678 1.21493 0.95756 1.03073 0.94125 1.19062 0.96909 0.90504 0.94299 1.21257 1.26806 0.94767 1.13623 0.92373 1.25020 0.96563 0.95000 0.97783 1.69961 1.44415 1.00388 1.38679 0.86552 0.81285 0.78347 0.81615 1.20559 1.21166 1.19726 0.87970 0.91152 0.92227 0.90955 0.91183 0.91857 0.91914 0.91513 0.90875 0.88381 0.91578 0.85453 0.85519 0.91678 0.91610 0.96142 0.96139 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 7.61 37.16 0.28 -1.88 16 2 C 0.15 1.58 3.51 -67.60 -0.24 1.34 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -1.12 5.37 -26.61 -0.14 -1.26 16 5 C -0.12 -0.92 5.88 -26.67 -0.16 -1.08 16 6 C -0.13 -1.15 6.09 -26.60 -0.16 -1.31 16 7 C 0.11 1.18 6.47 -3.72 -0.02 1.16 16 8 N -1.00 -12.04 3.21 -106.48 -0.34 -12.39 16 9 S 2.60 39.96 4.84 -107.50 -0.52 39.44 16 10 O -0.97 -17.39 16.30 -57.54 -0.94 -18.33 16 11 O -0.96 -16.44 13.63 -57.54 -0.78 -17.22 16 12 C -0.61 -9.81 5.90 37.16 0.22 -9.59 16 13 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.10 1.35 6.35 -51.93 -0.33 1.02 16 24 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 25 H 0.06 0.74 4.73 -51.93 -0.25 0.50 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.10 1.11 6.59 -51.93 -0.34 0.76 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.13 1.84 6.55 -51.92 -0.34 1.50 16 35 H 0.13 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 321.89 15.07 4.85 4.85 Total: -1.00 -33.33 321.89 -9.64 -42.97 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.72 Total: -2.04 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -0.91 Total: -27.97 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.39 Total: -38.35 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.72 Total: -35.55 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 39.96 SS G_CDS: -0.52 Total: 39.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.33 -9.64 -42.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.677 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds