Wall clock time and date at job start Mon Mar 30 2020 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.70504 * 2 1 4 4 C 1.53185 * 109.58699 * 120.35661 * 2 1 3 5 5 C 1.53040 * 109.31595 * 174.41922 * 4 2 1 6 6 C 1.53074 * 109.65714 * 298.70416 * 5 4 2 7 7 C 1.53183 * 109.30110 * 61.14757 * 6 5 4 8 8 N 1.46924 * 108.89286 * 305.58106 * 7 6 5 9 9 S 1.65599 * 120.63027 * 233.55374 * 8 7 6 10 10 O 1.42097 * 104.27895 * 13.42819 * 9 8 7 11 11 O 1.42106 * 104.27285 * 141.28173 * 9 8 7 12 12 C 1.81398 * 104.45084 * 257.35234 * 9 8 7 13 13 C 1.52998 * 109.46954 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.47246 * 180.02562 * 13 12 9 15 15 C 1.50695 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99654 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46953 * 89.99975 * 19 17 15 21 21 H 1.48495 * 109.47071 * 210.00042 * 19 17 15 22 22 H 1.48501 * 109.47224 * 330.00428 * 19 17 15 23 23 H 1.08994 * 109.47360 * 189.20709 * 1 2 3 24 24 H 1.09007 * 109.46802 * 309.21133 * 1 2 3 25 25 H 1.09000 * 109.47137 * 69.20384 * 1 2 3 26 26 H 1.08998 * 109.50280 * 294.37025 * 4 2 1 27 27 H 1.09005 * 109.50215 * 54.43881 * 4 2 1 28 28 H 1.09001 * 109.46221 * 58.65391 * 5 4 2 29 29 H 1.09000 * 109.46615 * 178.61570 * 5 4 2 30 30 H 1.09008 * 109.38878 * 301.26708 * 6 5 4 31 31 H 1.08999 * 109.62351 * 181.17246 * 6 5 4 32 32 H 1.09001 * 109.58910 * 185.72069 * 7 6 5 33 33 H 1.09004 * 109.58542 * 65.43436 * 7 6 5 34 34 H 1.09002 * 109.47464 * 299.99905 * 12 9 8 35 35 H 1.08997 * 109.46930 * 60.00036 * 12 9 8 36 36 H 1.08999 * 109.47404 * 299.99735 * 13 12 9 37 37 H 1.08997 * 109.47470 * 60.00125 * 13 12 9 38 38 H 1.08997 * 109.47166 * 300.00203 * 14 13 12 39 39 H 1.08997 * 109.46833 * 59.99674 * 14 13 12 40 40 H 0.97007 * 119.99736 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5675 -0.8481 1.1701 6 6 3.9601 -1.6642 -0.0640 7 6 3.4650 -0.9471 -1.3238 8 7 2.0225 -0.6996 -1.1945 9 16 0.9717 -1.2001 -2.3725 10 8 1.7397 -2.0882 -3.1729 11 8 -0.1662 -1.6584 -1.6552 12 6 0.5759 0.3095 -3.2971 13 6 -0.4000 -0.0256 -4.4268 14 6 -0.7335 1.2476 -5.2071 15 6 -1.6952 0.9177 -6.3194 16 1 -2.0344 -0.0985 -6.4564 17 6 -2.1414 1.9130 -7.1629 18 7 -1.7280 3.1503 -6.9963 19 14 -3.3329 1.5040 -8.5421 20 1 -4.7269 1.6402 -8.0486 21 1 -3.1160 2.4372 -9.6767 22 1 -3.1032 0.1093 -8.9974 23 1 -0.3634 -1.0143 0.1644 24 1 -0.3633 0.6497 0.7963 25 1 -0.3633 0.3649 -0.9607 26 1 1.7661 -0.1669 2.1368 27 1 1.6026 -1.7252 1.2916 28 1 4.0062 0.1472 1.0992 29 1 3.9379 -1.3449 2.0668 30 1 3.5036 -2.6523 -0.0046 31 1 5.0445 -1.7660 -0.1057 32 1 3.6518 -1.5719 -2.1972 33 1 3.9900 0.0018 -1.4343 34 1 0.1187 1.0371 -2.6264 35 1 1.4900 0.7278 -3.7183 36 1 0.0567 -0.7532 -5.0976 37 1 -1.3141 -0.4437 -4.0053 38 1 -1.1900 1.9756 -4.5366 39 1 0.1807 1.6653 -5.6287 40 1 -2.0421 3.8506 -7.5895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:21 Heat of formation + Delta-G solvation = -110.516885 kcal Electronic energy + Delta-G solvation = -20310.909819 eV Core-core repulsion = 17251.254535 eV Total energy + Delta-G solvation = -3059.655284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.73386 -38.39107 -37.03826 -36.50315 -34.23276 -33.77208 -33.06613 -29.69713 -28.12418 -25.77925 -24.90208 -23.20710 -22.29004 -21.38051 -19.81164 -18.63039 -18.12038 -17.55722 -17.21160 -16.49891 -16.37580 -15.68041 -15.44824 -15.20134 -14.92396 -14.52865 -14.45433 -14.05805 -13.88097 -13.64106 -13.31567 -13.22742 -13.05843 -12.92001 -12.80973 -12.69542 -12.56820 -12.24574 -12.14630 -11.85971 -11.76687 -11.62487 -11.46128 -11.39260 -11.17664 -11.04388 -10.59250 -9.86026 -8.24227 -6.35647 -0.76315 1.39337 1.40270 1.51763 1.67765 2.38795 2.78482 3.09178 3.17617 3.50576 3.75579 3.81285 3.91356 4.03201 4.17008 4.27447 4.34046 4.41647 4.47935 4.58457 4.69734 4.79568 4.81319 4.88203 4.93297 5.02558 5.04623 5.06276 5.22902 5.27672 5.33759 5.42428 5.50074 5.57159 5.59387 5.76301 5.76947 6.17474 6.79524 7.33809 8.87354 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.038227 B = 0.003971 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.284551 B = 7049.563354 C = 7165.722487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.147 3.853 3 H 0.098 0.902 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.132 4.132 7 C 0.104 3.896 8 N -0.995 5.995 9 S 2.618 3.382 10 O -0.994 6.994 11 O -0.977 6.977 12 C -0.612 4.612 13 C -0.104 4.104 14 C 0.032 3.968 15 C -0.554 4.554 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.265 1.265 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.003 0.997 39 H 0.002 0.998 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.776 -5.346 18.231 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.042 3.958 3 H 0.115 0.885 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.171 4.171 7 C -0.020 4.020 8 N -0.835 5.835 9 S 2.715 3.285 10 O -0.984 6.984 11 O -0.967 6.967 12 C -0.742 4.742 13 C -0.143 4.143 14 C -0.007 4.007 15 C -0.592 4.592 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.189 1.189 23 H 0.100 0.900 24 H 0.113 0.887 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.481 -6.082 18.035 22.228 hybrid contribution -0.688 0.713 -1.135 1.507 sum 10.792 -5.369 16.900 20.759 Atomic orbital electron populations 1.22774 0.94193 1.05099 1.03033 1.21261 0.93559 0.96679 0.84299 0.88451 1.21955 0.96724 1.00823 0.97070 1.21503 0.94927 1.01105 0.97730 1.21902 1.01977 0.98775 0.94436 1.21719 0.78519 1.01887 0.99892 1.57686 1.18328 1.74679 1.32790 1.04629 0.73476 0.76580 0.73769 1.93477 1.70815 1.62725 1.71407 1.93601 1.52965 1.80308 1.69840 1.30652 1.10000 1.21924 1.11672 1.21296 0.97193 1.00587 0.95272 1.18956 0.95426 0.92286 0.93988 1.21729 1.27630 0.95069 1.14777 0.92218 1.25942 0.98337 0.94802 1.00406 1.70073 1.45638 1.01378 1.39842 0.85462 0.78961 0.78449 0.78311 1.19619 1.20424 1.18921 0.90012 0.88673 0.93629 0.88786 0.92752 0.90448 0.90554 0.93037 0.88730 0.89773 0.89153 0.83900 0.84132 0.91865 0.91557 0.97845 0.97974 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.22 7.61 71.98 0.55 -3.67 16 2 C 0.15 2.71 3.51 44.97 0.16 2.87 16 3 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.13 -1.91 5.37 30.67 0.16 -1.74 16 5 C -0.12 -1.42 5.88 30.63 0.18 -1.24 16 6 C -0.13 -1.99 6.09 30.68 0.19 -1.81 16 7 C 0.10 1.96 6.47 86.36 0.56 2.52 16 8 N -0.99 -22.55 3.21 -490.79 -1.58 -24.13 16 9 S 2.62 80.23 4.84 -56.49 -0.27 79.95 16 10 O -0.99 -36.06 16.30 -127.65 -2.08 -38.14 16 11 O -0.98 -33.89 13.63 -127.65 -1.74 -35.63 16 12 C -0.61 -19.55 5.90 71.98 0.42 -19.13 16 13 C -0.10 -4.40 5.16 30.60 0.16 -4.24 16 14 C 0.03 1.67 4.97 29.85 0.15 1.82 16 15 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 0.20 5.46 84.66 0.46 0.66 16 18 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 19 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 23 H 0.08 2.14 6.35 -2.39 -0.02 2.12 16 24 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.04 1.11 4.73 -2.39 -0.01 1.10 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.99 8.12 -2.38 -0.02 0.97 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.83 6.59 -2.39 -0.02 1.82 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.14 4.07 6.55 -2.39 -0.02 4.05 16 35 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 36 H 0.06 2.63 8.14 -2.39 -0.02 2.62 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.16 16 39 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -72.24 321.89 0.86 -71.38 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.00 Total: 11.57 kcal Atomic # 6 Polarization: -58.92 SS G_CDS: 3.22 Total: -55.70 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.29 Total: -79.92 kcal Atomic # 8 Polarization: -69.95 SS G_CDS: -3.82 Total: -73.77 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 80.23 SS G_CDS: -0.27 Total: 79.95 kcal Total: -72.24 0.86 -71.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.141 kcal (2) G-P(sol) polarization free energy of solvation -72.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds