Wall clock time and date at job start Mon Mar 30 2020 02:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.52960 * 2 1 4 4 C 1.53047 * 109.49827 * 239.91954 * 2 1 3 5 5 C 1.53037 * 109.53631 * 178.68841 * 4 2 1 6 6 C 1.52759 * 109.38691 * 61.23885 * 5 4 2 7 7 N 1.46922 * 109.01013 * 305.58760 * 6 5 4 8 8 S 1.65597 * 120.63092 * 233.58604 * 7 6 5 9 9 O 1.42100 * 104.27928 * 153.64466 * 8 7 6 10 10 O 1.42100 * 104.27684 * 25.78714 * 8 7 6 11 11 C 1.81403 * 104.44918 * 269.71784 * 8 7 6 12 12 C 1.52996 * 109.47026 * 179.97438 * 11 8 7 13 13 C 1.53002 * 109.46736 * 179.97438 * 12 11 8 14 14 C 1.50706 * 109.47153 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.46924 * 118.73751 * 53.30761 * 7 6 5 23 23 H 1.08997 * 109.47057 * 299.91974 * 1 2 3 24 24 H 1.08998 * 109.46906 * 59.91790 * 1 2 3 25 25 H 1.08994 * 109.47330 * 179.91500 * 1 2 3 26 26 H 1.09004 * 109.45322 * 298.70486 * 4 2 1 27 27 H 1.08999 * 109.46034 * 58.67638 * 4 2 1 28 28 H 1.09004 * 109.49276 * 181.31946 * 5 4 2 29 29 H 1.09001 * 109.49736 * 301.41087 * 5 4 2 30 30 H 1.08996 * 109.50692 * 185.70322 * 6 5 4 31 31 H 1.09003 * 109.42888 * 65.42622 * 6 5 4 32 32 H 1.09007 * 109.47018 * 59.99734 * 11 8 7 33 33 H 1.09001 * 109.46893 * 299.99771 * 11 8 7 34 34 H 1.08999 * 109.46983 * 60.00517 * 12 11 8 35 35 H 1.08993 * 109.47310 * 299.99957 * 12 11 8 36 36 H 1.09004 * 109.47178 * 60.00488 * 13 12 11 37 37 H 1.08993 * 109.47411 * 300.00171 * 13 12 11 38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 39 39 H 1.09000 * 109.58923 * 66.43107 * 22 7 6 40 40 H 1.09002 * 109.58704 * 186.85651 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6951 -1.2659 6 6 4.1054 -1.4217 -0.0331 7 7 3.5046 -0.8293 1.1696 8 16 4.4587 -0.2843 2.4085 9 8 3.6761 0.7213 3.0374 10 8 5.6955 0.0330 1.7849 11 6 4.6466 -1.7206 3.5006 12 6 5.5197 -1.3400 4.6980 13 6 5.6776 -2.5513 5.6193 14 6 6.5381 -2.1767 6.7985 15 1 6.9325 -1.1748 6.8824 16 6 6.8219 -3.1129 7.7700 17 7 6.3371 -4.3315 7.6704 18 14 7.8879 -2.6485 9.2319 19 1 8.0363 -3.8224 10.1292 20 1 9.2264 -2.2197 8.7521 21 1 7.2486 -1.5340 9.9764 22 6 2.0413 -0.7239 1.2496 23 1 -0.3633 0.5126 0.8907 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3633 -1.0276 -0.0015 26 1 1.6966 -1.7573 -1.2352 27 1 1.6584 -0.2244 -2.1389 28 1 3.9334 -1.1898 -2.1671 29 1 3.9159 0.3388 -1.2540 30 1 5.1894 -1.3161 0.0100 31 1 3.8411 -2.4776 -0.0915 32 1 5.1186 -2.5353 2.9514 33 1 3.6657 -2.0400 3.8527 34 1 5.0480 -0.5253 5.2472 35 1 6.5004 -1.0208 4.3456 36 1 6.1491 -3.3664 5.0703 37 1 4.6967 -2.8701 5.9717 38 1 5.7834 -4.5727 6.9114 39 1 1.6051 -1.7217 1.2980 40 1 1.7638 -0.1580 2.1389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:41 Heat of formation + Delta-G solvation = -106.774973 kcal Electronic energy + Delta-G solvation = -19932.024799 eV Core-core repulsion = 16872.531777 eV Total energy + Delta-G solvation = -3059.493022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.94072 -37.02823 -35.79847 -34.92203 -33.67547 -32.28474 -32.03257 -27.47961 -27.02569 -24.77466 -23.40552 -22.38761 -20.92982 -20.33598 -18.71815 -17.69762 -16.92903 -16.27236 -15.89480 -15.23865 -14.89987 -14.51610 -14.28142 -14.14221 -13.81902 -13.70767 -13.25700 -12.89994 -12.49352 -12.20554 -12.06128 -12.04498 -11.97413 -11.88013 -11.69309 -11.46430 -11.30535 -11.06979 -10.81937 -10.80743 -10.71066 -10.55371 -10.14073 -10.10168 -9.80211 -9.06834 -8.57447 -8.37359 -6.41234 -4.11060 0.37377 2.68937 3.43528 3.45353 3.63954 3.95199 4.22418 4.34880 4.51913 4.56353 4.62552 4.79819 4.86504 5.07670 5.10709 5.14859 5.22227 5.32160 5.36762 5.40710 5.50981 5.53084 5.56019 5.70599 5.77327 5.79910 5.88015 5.89264 6.09299 6.13674 6.16242 6.31241 6.47966 6.71154 7.26048 7.38133 8.12967 8.40818 8.82531 9.61302 10.99504 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.037402 B = 0.003670 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.440618 B = 7626.920997 C = 7728.416500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.116 3.884 7 N -1.004 6.004 8 S 2.599 3.401 9 O -0.959 6.959 10 O -0.959 6.959 11 C -0.612 4.612 12 C -0.099 4.099 13 C 0.017 3.983 14 C -0.607 4.607 15 H 0.052 0.948 16 C 0.016 3.984 17 N -0.912 5.912 18 Si 1.070 2.930 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 C 0.121 3.879 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.268 0.732 39 H 0.067 0.933 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.607 5.447 -18.793 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.171 4.171 6 C -0.009 4.009 7 N -0.841 5.841 8 S 2.697 3.303 9 O -0.949 6.949 10 O -0.950 6.950 11 C -0.743 4.743 12 C -0.138 4.138 13 C -0.021 4.021 14 C -0.646 4.646 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.548 5.548 18 Si 0.898 3.102 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.005 4.005 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.598 5.738 -17.332 20.626 hybrid contribution -0.878 -0.147 -1.360 1.625 sum -10.475 5.591 -18.691 22.144 Atomic orbital electron populations 1.21783 0.94495 1.02033 1.02114 1.21461 0.95721 1.00312 0.95039 0.90610 1.21552 0.95302 1.00719 0.97384 1.21787 0.96058 1.01673 0.97601 1.21357 0.98684 0.96852 0.84026 1.57839 1.16121 1.78680 1.31454 1.05365 0.73565 0.77020 0.74368 1.93553 1.69880 1.54668 1.76843 1.93552 1.44298 1.82961 1.74150 1.30631 1.10150 1.19811 1.13748 1.21356 0.97142 1.02212 0.93088 1.19186 0.96871 0.92038 0.94005 1.22074 1.34429 0.99831 1.08240 0.92998 1.25895 0.98087 0.93521 1.01315 1.70798 1.32434 1.19314 1.32239 0.83534 0.75738 0.75592 0.75382 1.20715 1.21314 1.21311 1.21522 0.78805 1.00778 0.99353 0.92229 0.92417 0.92465 0.91758 0.91843 0.90763 0.91397 0.88764 0.91500 0.85573 0.85583 0.91458 0.91451 0.97046 0.97038 0.92173 0.91429 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.20 37.16 0.34 -0.70 16 2 C -0.11 -0.93 2.87 -90.49 -0.26 -1.19 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.11 -0.86 5.17 -26.69 -0.14 -1.00 16 5 C -0.13 -1.13 6.06 -26.84 -0.16 -1.29 16 6 C 0.12 1.15 6.40 -3.94 -0.03 1.13 16 7 N -1.00 -11.78 3.23 -113.77 -0.37 -12.15 16 8 S 2.60 39.62 5.45 -107.50 -0.59 39.04 16 9 O -0.96 -17.08 16.59 -57.54 -0.95 -18.03 16 10 O -0.96 -17.06 16.58 -57.54 -0.95 -18.01 16 11 C -0.61 -9.67 6.18 37.16 0.23 -9.44 16 12 C -0.10 -2.06 5.16 -26.73 -0.14 -2.20 16 13 C 0.02 0.44 4.28 -27.88 -0.12 0.32 16 14 C -0.61 -17.53 9.11 -34.44 -0.31 -17.85 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 17 N -0.91 -27.96 13.65 55.43 0.76 -27.21 16 18 Si 1.07 25.44 29.90 -169.99 -5.08 20.36 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.12 1.23 5.72 -3.71 -0.02 1.21 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.00 6.85 -51.93 -0.36 0.64 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 33 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 37 H 0.01 0.30 8.00 -51.93 -0.42 -0.12 16 38 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.03 6.86 -51.93 -0.36 0.67 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -34.83 331.02 -9.86 -44.70 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.96 Total: -3.03 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: -0.70 Total: -30.65 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.39 Total: -39.35 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.91 Total: -36.05 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Atomic # 16 Polarization: 39.62 SS G_CDS: -0.59 Total: 39.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.83 -9.86 -44.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.078 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds