Wall clock time and date at job start Mon Mar 30 2020 02:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.52960 * 2 1 4 4 C 1.53047 * 109.49827 * 239.91954 * 2 1 3 5 5 C 1.53037 * 109.53631 * 178.68841 * 4 2 1 6 6 C 1.52759 * 109.38691 * 61.23885 * 5 4 2 7 7 N 1.46922 * 109.01013 * 305.58760 * 6 5 4 8 8 S 1.65597 * 120.63092 * 233.58604 * 7 6 5 9 9 O 1.42100 * 104.27928 * 153.64466 * 8 7 6 10 10 O 1.42100 * 104.27684 * 25.78714 * 8 7 6 11 11 C 1.81403 * 104.44918 * 269.71784 * 8 7 6 12 12 C 1.52996 * 109.47026 * 179.97438 * 11 8 7 13 13 C 1.53002 * 109.46736 * 179.97438 * 12 11 8 14 14 C 1.50706 * 109.47153 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.46924 * 118.73751 * 53.30761 * 7 6 5 23 23 H 1.08997 * 109.47057 * 299.91974 * 1 2 3 24 24 H 1.08998 * 109.46906 * 59.91790 * 1 2 3 25 25 H 1.08994 * 109.47330 * 179.91500 * 1 2 3 26 26 H 1.09004 * 109.45322 * 298.70486 * 4 2 1 27 27 H 1.08999 * 109.46034 * 58.67638 * 4 2 1 28 28 H 1.09004 * 109.49276 * 181.31946 * 5 4 2 29 29 H 1.09001 * 109.49736 * 301.41087 * 5 4 2 30 30 H 1.08996 * 109.50692 * 185.70322 * 6 5 4 31 31 H 1.09003 * 109.42888 * 65.42622 * 6 5 4 32 32 H 1.09007 * 109.47018 * 59.99734 * 11 8 7 33 33 H 1.09001 * 109.46893 * 299.99771 * 11 8 7 34 34 H 1.08999 * 109.46983 * 60.00517 * 12 11 8 35 35 H 1.08993 * 109.47310 * 299.99957 * 12 11 8 36 36 H 1.09004 * 109.47178 * 60.00488 * 13 12 11 37 37 H 1.08993 * 109.47411 * 300.00171 * 13 12 11 38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 39 39 H 1.09000 * 109.58923 * 66.43107 * 22 7 6 40 40 H 1.09002 * 109.58704 * 186.85651 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6951 -1.2659 6 6 4.1054 -1.4217 -0.0331 7 7 3.5046 -0.8293 1.1696 8 16 4.4587 -0.2843 2.4085 9 8 3.6761 0.7213 3.0374 10 8 5.6955 0.0330 1.7849 11 6 4.6466 -1.7206 3.5006 12 6 5.5197 -1.3400 4.6980 13 6 5.6776 -2.5513 5.6193 14 6 6.5381 -2.1767 6.7985 15 1 6.9325 -1.1748 6.8824 16 6 6.8219 -3.1129 7.7700 17 7 6.3371 -4.3315 7.6704 18 14 7.8879 -2.6485 9.2319 19 1 8.0363 -3.8224 10.1292 20 1 9.2264 -2.2197 8.7521 21 1 7.2486 -1.5340 9.9764 22 6 2.0413 -0.7239 1.2496 23 1 -0.3633 0.5126 0.8907 24 1 -0.3633 0.5151 -0.8892 25 1 -0.3633 -1.0276 -0.0015 26 1 1.6966 -1.7573 -1.2352 27 1 1.6584 -0.2244 -2.1389 28 1 3.9334 -1.1898 -2.1671 29 1 3.9159 0.3388 -1.2540 30 1 5.1894 -1.3161 0.0100 31 1 3.8411 -2.4776 -0.0915 32 1 5.1186 -2.5353 2.9514 33 1 3.6657 -2.0400 3.8527 34 1 5.0480 -0.5253 5.2472 35 1 6.5004 -1.0208 4.3456 36 1 6.1491 -3.3664 5.0703 37 1 4.6967 -2.8701 5.9717 38 1 5.7834 -4.5727 6.9114 39 1 1.6051 -1.7217 1.2980 40 1 1.7638 -0.1580 2.1389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:41 Heat of formation + Delta-G solvation = -130.038899 kcal Electronic energy + Delta-G solvation = -19933.033599 eV Core-core repulsion = 16872.531777 eV Total energy + Delta-G solvation = -3060.501822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69340 -38.35694 -37.14531 -36.80526 -34.44310 -34.26331 -32.76225 -29.33924 -27.68144 -25.73288 -25.29191 -23.14536 -22.66698 -21.10426 -19.85406 -19.09360 -18.67333 -17.42573 -17.28278 -16.33017 -15.82944 -15.68005 -15.51847 -15.33683 -15.15340 -15.00170 -14.49091 -13.95573 -13.70484 -13.64605 -13.37346 -13.26982 -13.19426 -13.01891 -12.87375 -12.62123 -12.59780 -12.55035 -11.98723 -11.95443 -11.91076 -11.73963 -11.57752 -11.40744 -11.23458 -10.73065 -10.58218 -9.93199 -8.73512 -6.44732 -0.86677 1.51745 1.59788 1.60138 1.79607 2.53878 2.71626 3.04703 3.11455 3.49642 3.70380 3.75187 3.90267 3.96022 4.11966 4.18687 4.22446 4.41943 4.46478 4.55648 4.64838 4.76008 4.77486 4.82564 4.84333 4.88900 4.93968 5.05510 5.15929 5.22084 5.24419 5.28779 5.33356 5.42432 5.52043 5.64385 5.92593 6.13175 6.52682 7.36538 8.67980 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.037402 B = 0.003670 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.440618 B = 7626.920997 C = 7728.416500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.057 0.943 4 C -0.108 4.108 5 C -0.133 4.133 6 C 0.106 3.894 7 N -0.997 5.997 8 S 2.622 3.378 9 O -0.987 6.987 10 O -0.986 6.986 11 C -0.610 4.610 12 C -0.100 4.100 13 C 0.015 3.985 14 C -0.631 4.631 15 H 0.051 0.949 16 C -0.036 4.036 17 N -0.935 5.935 18 Si 1.116 2.884 19 H -0.281 1.281 20 H -0.269 1.269 21 H -0.269 1.269 22 C 0.111 3.889 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.000 1.000 37 H 0.000 1.000 38 H 0.257 0.743 39 H 0.092 0.908 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.303 5.265 -19.948 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.075 0.925 4 C -0.146 4.146 5 C -0.172 4.172 6 C -0.019 4.019 7 N -0.836 5.836 8 S 2.719 3.281 9 O -0.977 6.977 10 O -0.977 6.977 11 C -0.740 4.740 12 C -0.139 4.139 13 C -0.023 4.023 14 C -0.669 4.669 15 H 0.069 0.931 16 C -0.234 4.234 17 N -0.572 5.572 18 Si 0.937 3.063 19 H -0.206 1.206 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.014 4.014 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.297 5.565 -18.499 21.891 hybrid contribution -0.714 -0.098 -1.086 1.304 sum -11.011 5.468 -19.585 23.124 Atomic orbital electron populations 1.21760 0.93028 1.02900 1.02371 1.21481 0.96920 0.99261 0.95039 0.92480 1.21553 0.94456 1.01499 0.97075 1.21822 0.96845 1.00759 0.97730 1.21650 0.98244 0.98421 0.83553 1.57563 1.16614 1.78661 1.30731 1.04452 0.72981 0.76367 0.74332 1.93512 1.70400 1.55959 1.77878 1.93512 1.46075 1.83420 1.74671 1.30580 1.10212 1.21060 1.12194 1.21188 0.98337 1.00080 0.94310 1.19133 0.95499 0.93617 0.94082 1.22566 1.34834 0.99948 1.09532 0.93062 1.27445 0.98738 0.93010 1.04192 1.70922 1.33587 1.20393 1.32274 0.82951 0.75033 0.75901 0.72417 1.20575 1.19386 1.19414 1.21795 0.77582 1.02273 0.99706 0.92714 0.91501 0.91255 0.90319 0.90661 0.88548 0.93064 0.89754 0.88888 0.83744 0.83819 0.91726 0.91680 0.98131 0.98150 0.93325 0.88957 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.20 71.98 0.66 -1.05 16 2 C -0.11 -1.69 2.87 -10.71 -0.03 -1.72 16 3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.35 5.17 30.62 0.16 -1.20 16 5 C -0.13 -1.97 6.06 30.53 0.19 -1.78 16 6 C 0.11 1.88 6.40 86.22 0.55 2.43 16 7 N -1.00 -21.94 3.23 -513.85 -1.66 -23.60 16 8 S 2.62 78.84 5.45 -56.49 -0.31 78.53 16 9 O -0.99 -35.24 16.59 -127.65 -2.12 -37.36 16 10 O -0.99 -35.03 16.58 -127.65 -2.12 -37.14 16 11 C -0.61 -18.82 6.18 71.98 0.44 -18.38 16 12 C -0.10 -4.20 5.16 30.59 0.16 -4.04 16 13 C 0.01 0.77 4.28 29.85 0.13 0.90 16 14 C -0.63 -36.79 9.11 25.60 0.23 -36.55 16 15 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 16 C -0.04 -2.11 5.46 84.65 0.46 -1.65 16 17 N -0.93 -57.94 13.65 21.45 0.29 -57.65 16 18 Si 1.12 50.67 29.90 68.60 2.05 52.72 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 C 0.11 2.06 5.72 86.36 0.49 2.55 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.68 6.85 -2.39 -0.02 1.67 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.14 3.89 8.14 -2.39 -0.02 3.88 16 33 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 34 H 0.06 2.69 8.14 -2.39 -0.02 2.68 16 35 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.00 0.02 8.01 -2.39 -0.02 0.00 16 37 H 0.00 0.01 8.00 -2.39 -0.02 -0.01 16 38 H 0.26 15.96 7.22 -92.71 -0.67 15.29 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.73 6.86 -2.39 -0.02 1.71 16 Total: -1.00 -75.19 331.02 0.68 -74.52 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.09 Total: 10.47 kcal Atomic # 6 Polarization: -63.93 SS G_CDS: 3.45 Total: -60.49 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.37 Total: -81.25 kcal Atomic # 8 Polarization: -70.27 SS G_CDS: -4.23 Total: -74.51 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Atomic # 16 Polarization: 78.84 SS G_CDS: -0.31 Total: 78.53 kcal Total: -75.19 0.68 -74.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.522 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds