Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 115.56311 * 2 1 4 4 C 1.53004 * 117.49749 * 214.30856 * 2 1 3 5 5 C 1.53002 * 60.00174 * 252.50797 * 4 2 1 6 6 H 1.08997 * 117.49873 * 252.48707 * 5 4 2 7 7 C 1.50702 * 117.49558 * 107.48936 * 5 4 2 8 8 O 1.21282 * 119.99937 * 291.39155 * 7 5 4 9 9 N 1.34770 * 119.99752 * 111.39544 * 7 5 4 10 10 C 1.46506 * 119.99775 * 180.02562 * 9 7 5 11 11 C 1.50701 * 109.47265 * 179.97438 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.72687 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38885 * 119.93009 * 0.54603 * 13 12 11 15 15 O 1.35752 * 120.06514 * 179.75176 * 14 13 12 16 16 C 1.34831 * 116.99583 * 174.44034 * 15 14 13 17 17 H 1.08000 * 119.99655 * 5.05507 * 16 15 14 18 18 C 1.38651 * 119.99789 * 185.05206 * 16 15 14 19 19 N 1.31555 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99800 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46887 * 90.00363 * 20 18 16 22 22 H 1.48502 * 109.47195 * 209.99969 * 20 18 16 23 23 H 1.48495 * 109.47385 * 330.00616 * 20 18 16 24 24 C 1.38875 * 119.85984 * 359.72172 * 14 13 12 25 25 C 1.38098 * 119.93559 * 0.02562 * 24 14 13 26 26 H 1.09010 * 109.46820 * 274.31258 * 1 2 3 27 27 H 1.08995 * 109.47224 * 34.30817 * 1 2 3 28 28 H 1.08998 * 109.46893 * 154.31742 * 1 2 3 29 29 H 1.09006 * 117.49458 * 145.02009 * 4 2 1 30 30 H 1.08997 * 117.51922 * 359.97438 * 4 2 1 31 31 H 0.96994 * 120.00699 * 359.97438 * 9 7 5 32 32 H 1.08992 * 109.47220 * 59.99259 * 10 9 7 33 33 H 1.09005 * 109.46452 * 299.99309 * 10 9 7 34 34 H 1.08001 * 119.95920 * 359.97438 * 12 11 10 35 35 H 1.08005 * 120.03360 * 180.26705 * 13 12 11 36 36 H 0.96999 * 120.00442 * 180.02562 * 19 18 16 37 37 H 1.08003 * 120.03499 * 180.02562 * 24 14 13 38 38 H 1.08001 * 119.96639 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1717 -0.8755 1.2682 7 6 1.3721 -2.1406 1.4609 8 8 0.1639 -2.0534 1.4011 9 7 1.9416 -3.1493 2.1497 10 6 1.1013 -4.1409 2.8257 11 6 1.9770 -5.1540 3.5169 12 6 2.3736 -6.2960 2.8452 13 6 3.1807 -7.2235 3.4740 14 6 3.5847 -7.0141 4.7861 15 8 4.3740 -7.9265 5.4086 16 6 4.8241 -7.6083 6.6391 17 1 4.4881 -6.7011 7.1191 18 6 5.7181 -8.4460 7.2882 19 7 6.1277 -9.5509 6.7034 20 14 6.3422 -8.0049 8.9928 21 1 5.4377 -8.5864 10.0169 22 1 7.7115 -8.5499 9.1750 23 1 6.3735 -6.5277 9.1415 24 6 3.1802 -5.8690 5.4598 25 6 2.3774 -4.9427 4.8238 26 1 -0.3633 0.0773 1.0249 27 1 -0.3633 0.8488 -0.5792 28 1 -0.3633 -0.9261 -0.4454 29 1 3.1715 -0.8752 -1.2683 30 1 1.6115 -1.8590 -1.2680 31 1 2.9079 -3.2193 2.1973 32 1 0.4725 -4.6451 2.0919 33 1 0.4715 -3.6418 3.5622 34 1 2.0551 -6.4606 1.8264 35 1 3.4936 -8.1130 2.9474 36 1 6.7529 -10.1371 7.1577 37 1 3.4931 -5.7031 6.4801 38 1 2.0628 -4.0518 5.3471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067930233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = -21.346877 kcal Electronic energy + Delta-G solvation = -19931.954894 eV Core-core repulsion = 16740.722361 eV Total energy + Delta-G solvation = -3191.232533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14565 -39.13599 -37.23986 -36.44229 -34.37177 -32.39031 -30.33769 -30.13613 -28.58562 -26.18346 -25.14623 -23.36702 -22.07494 -21.25244 -20.63902 -19.87570 -18.09301 -17.29484 -17.03372 -15.93037 -15.50959 -15.09177 -14.64398 -14.39852 -14.29844 -13.80260 -13.70740 -13.42569 -13.21220 -12.81010 -12.75064 -12.67720 -12.35751 -12.09533 -11.69985 -11.66282 -11.40533 -10.97648 -10.81973 -10.70912 -10.50586 -10.43271 -10.26306 -9.58527 -9.44484 -8.94443 -8.92230 -8.30669 -7.34449 -6.54592 -4.13626 2.04982 2.11007 2.50599 3.06508 3.08183 3.13076 3.33431 3.65509 3.89002 4.43042 4.47447 4.65307 4.69651 4.99113 5.00198 5.15150 5.17521 5.23604 5.40598 5.48292 5.61559 5.64367 5.71912 5.78621 5.83948 5.91807 5.96460 6.10307 6.32875 6.35831 6.54759 6.58919 6.78432 6.93817 7.12241 7.25343 7.33250 7.62139 7.70190 7.90042 8.29566 8.90718 9.58723 10.62923 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.036993 B = 0.002929 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.727680 B = 9556.238784 C = 9733.394472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.194 4.194 6 H 0.122 0.878 7 C 0.538 3.462 8 O -0.543 6.543 9 N -0.718 5.718 10 C 0.180 3.820 11 C -0.215 4.215 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.394 4.394 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.237 4.237 25 C -0.051 4.051 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.402 0.598 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.128 0.872 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 14.598 -9.782 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 H 0.127 0.873 4 C -0.189 4.189 5 C -0.215 4.215 6 H 0.140 0.860 7 C 0.324 3.676 8 O -0.422 6.422 9 N -0.369 5.369 10 C 0.057 3.943 11 C -0.216 4.216 12 C -0.073 4.073 13 C -0.214 4.214 14 C 0.106 3.894 15 O -0.076 6.076 16 C -0.470 4.470 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.256 4.256 25 C -0.070 4.070 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.236 0.764 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.987 14.199 -9.809 18.267 hybrid contribution 0.998 0.086 1.069 1.465 sum -4.989 14.285 -8.740 17.474 Atomic orbital electron populations 1.21354 0.91512 1.01308 1.02593 1.22359 0.96598 0.93483 1.01506 0.87303 1.23072 1.03006 1.01876 0.90984 1.22322 1.02145 1.01221 0.95797 0.86041 1.19678 0.88093 0.81322 0.78493 1.90684 1.14557 1.75093 1.61829 1.46326 1.10878 1.27205 1.52518 1.19972 0.91528 0.87618 0.95149 1.19214 1.08333 0.98213 0.95868 1.20527 0.95654 0.92937 0.98202 1.20218 1.05512 1.02161 0.93556 1.19438 0.90059 0.88427 0.91509 1.83980 1.55518 1.37718 1.30356 1.21358 1.26061 1.09239 0.90328 0.88918 1.25319 0.95849 0.95224 1.00060 1.70033 1.30415 1.11043 1.37874 0.85693 0.78424 0.79009 0.80218 1.19784 1.20169 1.19127 1.21158 1.05714 0.96918 1.01823 1.20643 0.95332 0.97421 0.93581 0.91372 0.93467 0.91745 0.87936 0.88262 0.76369 0.91632 0.91634 0.86983 0.86362 0.91859 0.85411 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.43 37.16 0.31 -0.84 16 2 C -0.12 -1.10 6.41 -90.62 -0.58 -1.68 16 3 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.15 -1.28 9.88 -26.73 -0.26 -1.55 16 5 C -0.19 -1.89 6.19 -91.77 -0.57 -2.46 16 6 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 7 C 0.54 6.94 7.59 -10.99 -0.08 6.85 16 8 O -0.54 -8.57 13.10 5.56 0.07 -8.49 16 9 N -0.72 -8.97 5.55 -61.47 -0.34 -9.31 16 10 C 0.18 2.51 5.80 -5.19 -0.03 2.48 16 11 C -0.21 -3.43 5.25 -104.57 -0.55 -3.98 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 13 C -0.20 -3.91 9.99 -39.40 -0.39 -4.31 16 14 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 15 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 16 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 17 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 20 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.24 -4.89 9.17 -39.40 -0.36 -5.25 16 25 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 26 H 0.07 0.82 7.26 -51.92 -0.38 0.44 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.76 7.01 -51.93 -0.36 0.40 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 31 H 0.40 4.50 8.46 -40.82 -0.35 4.16 16 32 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -30.39 325.52 -7.98 -38.37 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.01 Total: 7.48 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.35 Total: -19.23 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.42 Total: -33.16 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.07 Total: -13.28 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.39 -7.98 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.022 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds