Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 115.56311 * 2 1 4 4 C 1.53004 * 117.49749 * 214.30856 * 2 1 3 5 5 C 1.53002 * 60.00174 * 252.50797 * 4 2 1 6 6 H 1.08997 * 117.49873 * 252.48707 * 5 4 2 7 7 C 1.50702 * 117.49558 * 107.48936 * 5 4 2 8 8 O 1.21282 * 119.99937 * 291.39155 * 7 5 4 9 9 N 1.34770 * 119.99752 * 111.39544 * 7 5 4 10 10 C 1.46506 * 119.99775 * 180.02562 * 9 7 5 11 11 C 1.50701 * 109.47265 * 179.97438 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.72687 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38885 * 119.93009 * 0.54603 * 13 12 11 15 15 O 1.35752 * 120.06514 * 179.75176 * 14 13 12 16 16 C 1.34831 * 116.99583 * 174.44034 * 15 14 13 17 17 H 1.08000 * 119.99655 * 5.05507 * 16 15 14 18 18 C 1.38651 * 119.99789 * 185.05206 * 16 15 14 19 19 N 1.31555 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99800 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46887 * 90.00363 * 20 18 16 22 22 H 1.48502 * 109.47195 * 209.99969 * 20 18 16 23 23 H 1.48495 * 109.47385 * 330.00616 * 20 18 16 24 24 C 1.38875 * 119.85984 * 359.72172 * 14 13 12 25 25 C 1.38098 * 119.93559 * 0.02562 * 24 14 13 26 26 H 1.09010 * 109.46820 * 274.31258 * 1 2 3 27 27 H 1.08995 * 109.47224 * 34.30817 * 1 2 3 28 28 H 1.08998 * 109.46893 * 154.31742 * 1 2 3 29 29 H 1.09006 * 117.49458 * 145.02009 * 4 2 1 30 30 H 1.08997 * 117.51922 * 359.97438 * 4 2 1 31 31 H 0.96994 * 120.00699 * 359.97438 * 9 7 5 32 32 H 1.08992 * 109.47220 * 59.99259 * 10 9 7 33 33 H 1.09005 * 109.46452 * 299.99309 * 10 9 7 34 34 H 1.08001 * 119.95920 * 359.97438 * 12 11 10 35 35 H 1.08005 * 120.03360 * 180.26705 * 13 12 11 36 36 H 0.96999 * 120.00442 * 180.02562 * 19 18 16 37 37 H 1.08003 * 120.03499 * 180.02562 * 24 14 13 38 38 H 1.08001 * 119.96639 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1717 -0.8755 1.2682 7 6 1.3721 -2.1406 1.4609 8 8 0.1639 -2.0534 1.4011 9 7 1.9416 -3.1493 2.1497 10 6 1.1013 -4.1409 2.8257 11 6 1.9770 -5.1540 3.5169 12 6 2.3736 -6.2960 2.8452 13 6 3.1807 -7.2235 3.4740 14 6 3.5847 -7.0141 4.7861 15 8 4.3740 -7.9265 5.4086 16 6 4.8241 -7.6083 6.6391 17 1 4.4881 -6.7011 7.1191 18 6 5.7181 -8.4460 7.2882 19 7 6.1277 -9.5509 6.7034 20 14 6.3422 -8.0049 8.9928 21 1 5.4377 -8.5864 10.0169 22 1 7.7115 -8.5499 9.1750 23 1 6.3735 -6.5277 9.1415 24 6 3.1802 -5.8690 5.4598 25 6 2.3774 -4.9427 4.8238 26 1 -0.3633 0.0773 1.0249 27 1 -0.3633 0.8488 -0.5792 28 1 -0.3633 -0.9261 -0.4454 29 1 3.1715 -0.8752 -1.2683 30 1 1.6115 -1.8590 -1.2680 31 1 2.9079 -3.2193 2.1973 32 1 0.4725 -4.6451 2.0919 33 1 0.4715 -3.6418 3.5622 34 1 2.0551 -6.4606 1.8264 35 1 3.4936 -8.1130 2.9474 36 1 6.7529 -10.1371 7.1577 37 1 3.4931 -5.7031 6.4801 38 1 2.0628 -4.0518 5.3471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067930233.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -40.126232 kcal Electronic energy + Delta-G solvation = -19932.769228 eV Core-core repulsion = 16740.722361 eV Total energy + Delta-G solvation = -3192.046867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19046 -40.71419 -38.66703 -37.49519 -35.58781 -34.28391 -31.87042 -31.54920 -29.45074 -27.77058 -26.68127 -24.37777 -23.66172 -22.20816 -21.90197 -20.87032 -19.87611 -18.88492 -18.11081 -17.05131 -16.63456 -16.32362 -16.30722 -15.76909 -15.61420 -15.52876 -15.00799 -14.72440 -14.40234 -14.25695 -13.96041 -13.66975 -13.51817 -13.31937 -13.12038 -13.00685 -12.55920 -12.38042 -12.33607 -12.24486 -12.12137 -11.21530 -11.15874 -11.01603 -10.84440 -10.55138 -10.02962 -9.82625 -9.01901 -8.49076 -6.17484 0.53188 0.56043 1.35680 1.43920 1.52797 1.56185 2.16565 2.28532 2.83591 2.91126 3.16398 3.47235 3.70576 3.83413 3.92571 3.97879 4.01686 4.15840 4.24741 4.43999 4.51068 4.55154 4.72587 4.79136 4.85861 4.92967 5.00756 5.02565 5.08803 5.13264 5.20936 5.24932 5.44616 5.51095 5.60111 5.67763 5.73522 6.00501 6.14326 6.62747 6.95719 7.30439 7.74671 8.73762 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.036993 B = 0.002929 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.727680 B = 9556.238784 C = 9733.394472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 H 0.133 0.867 4 C -0.140 4.140 5 C -0.202 4.202 6 H 0.144 0.856 7 C 0.534 3.466 8 O -0.576 6.576 9 N -0.714 5.714 10 C 0.185 3.815 11 C -0.182 4.182 12 C -0.044 4.044 13 C -0.204 4.204 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.414 4.414 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.243 4.243 25 C -0.046 4.046 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.410 0.590 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.273 0.727 37 H 0.121 0.879 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 17.576 -10.640 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.142 4.142 3 H 0.151 0.849 4 C -0.178 4.178 5 C -0.222 4.222 6 H 0.162 0.838 7 C 0.322 3.678 8 O -0.456 6.456 9 N -0.365 5.365 10 C 0.062 3.938 11 C -0.183 4.183 12 C -0.063 4.063 13 C -0.223 4.223 14 C 0.072 3.928 15 O -0.135 6.135 16 C -0.490 4.490 17 H 0.121 0.879 18 C -0.219 4.219 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.175 1.175 24 C -0.263 4.263 25 C -0.065 4.065 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.246 0.754 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.139 0.861 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.487 17.221 -10.701 21.288 hybrid contribution 0.870 -0.630 1.058 1.508 sum -5.617 16.592 -9.643 19.995 Atomic orbital electron populations 1.21280 0.92922 1.01015 1.01333 1.22491 0.95617 0.94673 1.01441 0.84884 1.23159 1.03736 1.00945 0.89927 1.22377 1.02548 1.00726 0.96595 0.83805 1.20223 0.88023 0.81502 0.78019 1.90684 1.16162 1.75849 1.62903 1.46176 1.11148 1.26862 1.52329 1.19856 0.91160 0.87423 0.95342 1.19501 1.05885 0.97798 0.95155 1.20869 0.93951 0.91931 0.99506 1.20452 1.06092 1.03036 0.92762 1.19987 0.90680 0.89296 0.92874 1.83950 1.58278 1.40087 1.31164 1.21837 1.26524 1.09871 0.90792 0.87901 1.26584 0.95847 0.94946 1.04544 1.70175 1.32363 1.12886 1.40265 0.84593 0.77787 0.79444 0.74454 1.18914 1.19640 1.17529 1.21244 1.06363 0.96923 1.01723 1.20936 0.93997 0.97484 0.94067 0.93439 0.91700 0.93753 0.85347 0.89367 0.75371 0.91139 0.91345 0.83578 0.86634 0.91770 0.86149 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 8.43 71.98 0.61 -1.48 16 2 C -0.12 -1.86 6.41 -10.79 -0.07 -1.93 16 3 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.14 -1.90 9.88 30.60 0.30 -1.60 16 5 C -0.20 -3.28 6.19 -11.54 -0.07 -3.35 16 6 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 7 C 0.53 12.38 7.59 87.66 0.67 13.05 16 8 O -0.58 -17.20 13.10 -3.04 -0.04 -17.24 16 9 N -0.71 -15.45 5.55 -466.78 -2.59 -18.04 16 10 C 0.19 4.53 5.80 85.63 0.50 5.02 16 11 C -0.18 -5.25 5.25 -19.83 -0.10 -5.36 16 12 C -0.04 -1.37 9.69 22.25 0.22 -1.15 16 13 C -0.20 -8.19 9.99 22.39 0.22 -7.97 16 14 C 0.12 5.83 6.65 22.58 0.15 5.98 16 15 O -0.23 -13.37 9.76 -22.78 -0.22 -13.59 16 16 C -0.41 -23.47 9.49 67.92 0.64 -22.82 16 17 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 18 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 19 N -0.92 -55.41 13.67 21.61 0.30 -55.12 16 20 Si 1.02 41.79 29.55 68.60 2.03 43.81 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 24 C -0.24 -10.00 9.17 22.39 0.21 -9.80 16 25 C -0.05 -1.48 9.69 22.25 0.22 -1.27 16 26 H 0.05 1.10 7.26 -2.38 -0.02 1.08 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.04 1.01 7.01 -2.39 -0.02 0.99 16 29 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 31 H 0.41 7.69 8.46 -92.71 -0.78 6.90 16 32 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 33 H 0.07 1.71 8.08 -2.38 -0.02 1.69 16 34 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 38 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -70.54 325.52 3.71 -66.83 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.29 Total: 26.74 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 3.95 Total: -33.39 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -2.29 Total: -73.16 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.26 Total: -30.83 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -70.54 3.71 -66.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930233.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.704 kcal (2) G-P(sol) polarization free energy of solvation -70.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds