Wall clock time and date at job start Mon Mar 30 2020 02:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09011 * 109.99105 * 2 1 4 4 O 1.43744 * 109.87756 * 121.07944 * 2 1 3 5 5 C 1.44386 * 106.97105 * 145.94047 * 4 2 1 6 6 C 1.54994 * 103.49079 * 319.94017 * 5 4 2 7 7 C 1.54094 * 109.88139 * 238.91641 * 2 1 3 8 8 H 1.08997 * 110.48738 * 119.73813 * 7 2 1 9 9 C 1.50701 * 110.48590 * 357.22001 * 7 2 1 10 10 O 1.21272 * 119.99937 * 274.82328 * 9 7 2 11 11 N 1.34778 * 119.99690 * 94.82662 * 9 7 2 12 12 C 1.37135 * 120.00505 * 3.67184 * 11 9 7 13 13 H 1.07999 * 119.99829 * 306.84446 * 12 11 9 14 14 C 1.38893 * 120.00280 * 126.83637 * 12 11 9 15 15 N 1.31419 * 119.99768 * 2.99458 * 14 12 11 16 16 Si 1.86797 * 120.00103 * 182.99061 * 14 12 11 17 17 H 1.48501 * 109.47107 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.47501 * 300.00623 * 16 14 12 19 19 H 1.48510 * 109.47000 * 60.00255 * 16 14 12 20 20 C 1.39796 * 119.99637 * 183.67117 * 11 9 7 21 21 C 1.38957 * 120.07724 * 351.37022 * 20 11 9 22 22 C 1.38089 * 119.91882 * 179.72129 * 21 20 11 23 23 C 1.38306 * 120.07540 * 0.55736 * 22 21 20 24 24 C 1.38303 * 120.15992 * 359.71895 * 23 22 21 25 25 C 1.38090 * 120.07761 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47122 * 185.89041 * 1 2 3 27 27 H 1.09000 * 109.47333 * 305.89362 * 1 2 3 28 28 H 1.09003 * 109.47370 * 65.89042 * 1 2 3 29 29 H 1.09002 * 110.61854 * 78.44093 * 5 4 2 30 30 H 1.09001 * 110.61525 * 201.28271 * 5 4 2 31 31 H 1.08996 * 110.90879 * 278.82581 * 6 5 4 32 32 H 1.09004 * 110.90611 * 155.22290 * 6 5 4 33 33 H 0.97005 * 120.00107 * 174.99962 * 15 14 12 34 34 H 1.07997 * 120.04118 * 0.02562 * 21 20 11 35 35 H 1.08005 * 119.95806 * 180.25750 * 22 21 20 36 36 H 1.07998 * 119.91836 * 179.70122 * 23 22 21 37 37 H 1.08001 * 119.96332 * 179.97438 * 24 23 22 38 38 H 1.07995 * 120.04145 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0187 -0.6978 1.1578 5 6 3.2380 -1.3640 0.7648 6 6 2.9196 -1.8914 -0.6575 7 6 2.0540 -0.7482 -1.2410 8 1 2.6600 -0.0852 -1.8585 9 6 0.9074 -1.3104 -2.0411 10 8 0.4366 -2.3895 -1.7502 11 7 0.4052 -0.6140 -3.0800 12 6 0.9853 0.5703 -3.4563 13 1 1.1392 1.3518 -2.7270 14 6 1.3751 0.7646 -4.7751 15 7 1.1349 -0.1628 -5.6747 16 14 2.2408 2.3441 -5.2702 17 1 2.5487 2.3055 -6.7224 18 1 1.3585 3.5033 -4.9823 19 1 3.5030 2.4793 -4.4994 20 6 -0.7071 -1.0990 -3.7742 21 6 -1.1866 -2.3772 -3.5152 22 6 -2.2891 -2.8509 -4.1986 23 6 -2.9088 -2.0590 -5.1482 24 6 -2.4308 -0.7884 -5.4126 25 6 -1.3319 -0.3063 -4.7292 26 1 -0.3633 -1.0222 0.1055 27 1 -0.3634 0.6025 0.8325 28 1 -0.3634 0.4198 -0.9380 29 1 4.0685 -0.6587 0.7356 30 1 3.4600 -2.1889 1.4418 31 1 2.3541 -2.8219 -0.6098 32 1 3.8333 -2.0223 -1.2373 33 1 1.3410 0.0019 -6.6082 34 1 -0.7007 -2.9977 -2.7767 35 1 -2.6649 -3.8427 -3.9948 36 1 -3.7679 -2.4338 -5.6846 37 1 -2.9169 -0.1729 -6.1551 38 1 -0.9589 0.6858 -4.9365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092345147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:19 Heat of formation + Delta-G solvation = -34.970627 kcal Electronic energy + Delta-G solvation = -22325.834837 eV Core-core repulsion = 19134.011534 eV Total energy + Delta-G solvation = -3191.823303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32629 -38.66016 -36.93187 -35.03192 -32.09568 -31.92854 -31.04581 -29.59943 -28.70510 -25.86196 -25.19705 -22.60213 -21.78070 -21.42217 -20.54114 -18.97773 -17.49877 -16.62347 -15.92926 -15.51235 -15.36553 -15.21724 -14.86623 -14.21080 -14.15786 -13.38809 -13.07902 -12.87813 -12.61935 -12.27149 -12.05949 -11.85801 -11.68276 -11.54578 -11.42647 -11.33574 -11.06567 -10.83429 -10.81099 -10.54064 -10.50140 -10.27420 -9.98854 -9.40547 -9.27260 -8.79192 -8.14897 -7.74972 -6.94375 -6.27395 -4.55584 2.44964 2.61965 3.01051 3.07664 3.09427 3.65944 3.91334 4.18161 4.41685 4.74207 4.96040 5.14257 5.27457 5.39384 5.44084 5.59005 5.79404 5.87475 5.90536 5.93649 5.99712 6.11408 6.20372 6.22458 6.33467 6.39593 6.55429 6.68091 6.74900 6.78168 6.94240 7.17027 7.21755 7.23789 7.54392 7.65700 7.69310 7.80890 8.05096 8.44738 8.80579 9.22243 9.59370 10.45420 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.008896 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.313454 B = 3146.865479 C = 4467.126965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 H 0.071 0.929 4 O -0.377 6.377 5 C 0.050 3.950 6 C -0.143 4.143 7 C -0.129 4.129 8 H 0.113 0.887 9 C 0.509 3.491 10 O -0.561 6.561 11 N -0.384 5.384 12 C -0.370 4.370 13 H 0.093 0.907 14 C 0.054 3.946 15 N -0.839 5.839 16 Si 0.917 3.083 17 H -0.281 1.281 18 H -0.269 1.269 19 H -0.268 1.268 20 C 0.189 3.811 21 C -0.188 4.188 22 C -0.123 4.123 23 C -0.173 4.173 24 C -0.125 4.125 25 C -0.091 4.091 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.275 0.725 34 H 0.170 0.830 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 1.324 4.761 5.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.089 0.911 4 O -0.296 6.296 5 C -0.027 4.027 6 C -0.181 4.181 7 C -0.150 4.150 8 H 0.131 0.869 9 C 0.301 3.699 10 O -0.445 6.445 11 N -0.091 5.091 12 C -0.497 4.497 13 H 0.111 0.889 14 C -0.157 4.157 15 N -0.470 5.470 16 Si 0.743 3.257 17 H -0.206 1.206 18 H -0.194 1.194 19 H -0.193 1.193 20 C 0.093 3.907 21 C -0.208 4.208 22 C -0.141 4.141 23 C -0.192 4.192 24 C -0.144 4.144 25 C -0.111 4.111 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.187 0.813 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.381 0.762 4.922 5.169 hybrid contribution 0.580 0.931 -1.041 1.512 sum 1.962 1.694 3.881 4.667 Atomic orbital electron populations 1.22099 0.93708 1.03537 1.02522 1.22499 0.95384 0.94878 0.83505 0.91081 1.88842 1.39637 1.67819 1.33316 1.23486 0.87643 0.96023 0.95550 1.23131 0.99869 0.99678 0.95439 1.22575 0.97135 0.98463 0.96870 0.86853 1.20311 0.83745 0.83875 0.81965 1.90208 1.61433 1.22146 1.70754 1.41041 1.22547 1.19781 1.25776 1.19255 1.41256 0.93237 0.95970 0.88928 1.25633 0.95290 0.98293 0.96446 1.69981 1.42012 1.32551 1.02453 0.86145 0.80209 0.81364 0.78012 1.20615 1.19423 1.19332 1.18154 0.86635 0.92426 0.93529 1.22619 0.98404 0.96246 1.03531 1.20827 0.97190 0.98651 0.97472 1.20741 1.01528 0.95722 1.01233 1.20708 0.97485 0.95964 1.00259 1.20743 0.94076 1.00566 0.95762 0.91060 0.92531 0.90365 0.92533 0.89321 0.88936 0.90439 0.91410 0.81331 0.87918 0.88355 0.87969 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.41 37.16 0.31 -2.61 16 2 C 0.10 1.66 4.05 -26.16 -0.11 1.56 16 3 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 4 O -0.38 -6.50 11.19 -35.23 -0.39 -6.90 16 5 C 0.05 0.71 7.72 38.21 0.29 1.00 16 6 C -0.14 -2.35 6.65 -24.72 -0.16 -2.52 16 7 C -0.13 -2.44 2.84 -90.25 -0.26 -2.69 16 8 H 0.11 2.14 6.89 -51.93 -0.36 1.79 16 9 C 0.51 11.53 4.50 -10.98 -0.05 11.48 16 10 O -0.56 -13.52 11.47 5.56 0.06 -13.46 16 11 N -0.38 -9.25 2.21 -58.98 -0.13 -9.38 16 12 C -0.37 -8.67 6.81 -14.94 -0.10 -8.77 16 13 H 0.09 2.03 7.68 -52.49 -0.40 1.63 16 14 C 0.05 1.26 4.12 -17.49 -0.07 1.19 16 15 N -0.84 -21.30 10.87 55.49 0.60 -20.70 16 16 Si 0.92 18.13 29.56 -169.99 -5.02 13.10 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 C 0.19 4.68 5.70 -83.69 -0.48 4.20 16 21 C -0.19 -4.50 9.03 -39.37 -0.36 -4.86 16 22 C -0.12 -2.60 10.04 -39.61 -0.40 -2.99 16 23 C -0.17 -3.49 10.04 -39.53 -0.40 -3.88 16 24 C -0.13 -2.64 10.04 -39.61 -0.40 -3.04 16 25 C -0.09 -2.14 7.53 -39.37 -0.30 -2.44 16 26 H 0.07 1.42 7.18 -51.93 -0.37 1.05 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.53 6.86 -51.93 -0.36 1.17 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.68 6.92 -51.93 -0.36 1.32 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.28 6.69 8.32 -40.82 -0.34 6.35 16 34 H 0.17 4.19 4.59 -55.96 -0.26 3.93 16 35 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 36 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.12 3.00 5.90 -52.49 -0.31 2.69 16 LS Contribution 303.32 15.07 4.57 4.57 Total: -1.00 -27.38 303.32 -7.71 -35.08 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -4.93 Total: 12.05 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.46 Total: -14.38 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.47 Total: -30.08 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.33 Total: -20.36 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.38 -7.71 -35.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092345147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.112 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds