Wall clock time and date at job start Mon Mar 30 2020 02:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09011 * 109.99105 * 2 1 4 4 O 1.43744 * 109.87756 * 121.07944 * 2 1 3 5 5 C 1.44386 * 106.97105 * 145.94047 * 4 2 1 6 6 C 1.54994 * 103.49079 * 319.94017 * 5 4 2 7 7 C 1.54094 * 109.88139 * 238.91641 * 2 1 3 8 8 H 1.08997 * 110.48738 * 119.73813 * 7 2 1 9 9 C 1.50701 * 110.48590 * 357.22001 * 7 2 1 10 10 O 1.21272 * 119.99937 * 274.82328 * 9 7 2 11 11 N 1.34778 * 119.99690 * 94.82662 * 9 7 2 12 12 C 1.37135 * 120.00505 * 3.67184 * 11 9 7 13 13 H 1.07999 * 119.99829 * 306.84446 * 12 11 9 14 14 C 1.38893 * 120.00280 * 126.83637 * 12 11 9 15 15 N 1.31419 * 119.99768 * 2.99458 * 14 12 11 16 16 Si 1.86797 * 120.00103 * 182.99061 * 14 12 11 17 17 H 1.48501 * 109.47107 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.47501 * 300.00623 * 16 14 12 19 19 H 1.48510 * 109.47000 * 60.00255 * 16 14 12 20 20 C 1.39796 * 119.99637 * 183.67117 * 11 9 7 21 21 C 1.38957 * 120.07724 * 351.37022 * 20 11 9 22 22 C 1.38089 * 119.91882 * 179.72129 * 21 20 11 23 23 C 1.38306 * 120.07540 * 0.55736 * 22 21 20 24 24 C 1.38303 * 120.15992 * 359.71895 * 23 22 21 25 25 C 1.38090 * 120.07761 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47122 * 185.89041 * 1 2 3 27 27 H 1.09000 * 109.47333 * 305.89362 * 1 2 3 28 28 H 1.09003 * 109.47370 * 65.89042 * 1 2 3 29 29 H 1.09002 * 110.61854 * 78.44093 * 5 4 2 30 30 H 1.09001 * 110.61525 * 201.28271 * 5 4 2 31 31 H 1.08996 * 110.90879 * 278.82581 * 6 5 4 32 32 H 1.09004 * 110.90611 * 155.22290 * 6 5 4 33 33 H 0.97005 * 120.00107 * 174.99962 * 15 14 12 34 34 H 1.07997 * 120.04118 * 0.02562 * 21 20 11 35 35 H 1.08005 * 119.95806 * 180.25750 * 22 21 20 36 36 H 1.07998 * 119.91836 * 179.70122 * 23 22 21 37 37 H 1.08001 * 119.96332 * 179.97438 * 24 23 22 38 38 H 1.07995 * 120.04145 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0187 -0.6978 1.1578 5 6 3.2380 -1.3640 0.7648 6 6 2.9196 -1.8914 -0.6575 7 6 2.0540 -0.7482 -1.2410 8 1 2.6600 -0.0852 -1.8585 9 6 0.9074 -1.3104 -2.0411 10 8 0.4366 -2.3895 -1.7502 11 7 0.4052 -0.6140 -3.0800 12 6 0.9853 0.5703 -3.4563 13 1 1.1392 1.3518 -2.7270 14 6 1.3751 0.7646 -4.7751 15 7 1.1349 -0.1628 -5.6747 16 14 2.2408 2.3441 -5.2702 17 1 2.5487 2.3055 -6.7224 18 1 1.3585 3.5033 -4.9823 19 1 3.5030 2.4793 -4.4994 20 6 -0.7071 -1.0990 -3.7742 21 6 -1.1866 -2.3772 -3.5152 22 6 -2.2891 -2.8509 -4.1986 23 6 -2.9088 -2.0590 -5.1482 24 6 -2.4308 -0.7884 -5.4126 25 6 -1.3319 -0.3063 -4.7292 26 1 -0.3633 -1.0222 0.1055 27 1 -0.3634 0.6025 0.8325 28 1 -0.3634 0.4198 -0.9380 29 1 4.0685 -0.6587 0.7356 30 1 3.4600 -2.1889 1.4418 31 1 2.3541 -2.8219 -0.6098 32 1 3.8333 -2.0223 -1.2373 33 1 1.3410 0.0019 -6.6082 34 1 -0.7007 -2.9977 -2.7767 35 1 -2.6649 -3.8427 -3.9948 36 1 -3.7679 -2.4338 -5.6846 37 1 -2.9169 -0.1729 -6.1551 38 1 -0.9589 0.6858 -4.9365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092345147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:19 Heat of formation + Delta-G solvation = -49.684090 kcal Electronic energy + Delta-G solvation = -22326.472861 eV Core-core repulsion = 19134.011534 eV Total energy + Delta-G solvation = -3192.461327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95024 -40.16416 -38.58846 -36.80254 -33.79039 -33.48493 -32.39236 -31.32740 -30.39670 -27.32538 -26.94423 -24.18755 -23.21783 -23.00715 -22.18952 -20.66790 -19.18064 -18.19504 -17.47664 -17.20340 -16.88523 -16.71078 -16.33693 -15.81522 -15.74534 -15.01960 -14.74497 -14.52840 -14.12672 -13.95282 -13.57834 -13.39996 -13.27571 -13.17980 -13.01432 -12.84432 -12.67181 -12.46578 -12.16278 -12.11118 -11.87371 -11.74528 -11.64375 -11.02468 -10.69333 -10.55000 -9.89484 -9.49282 -8.73120 -8.05407 -6.39365 0.73176 0.86461 1.45353 1.46498 1.55684 1.98062 2.25861 2.74728 2.92037 2.97372 3.39379 3.61280 3.81503 4.01577 4.14720 4.31466 4.32934 4.34903 4.41233 4.51890 4.60496 4.62859 4.72465 4.87463 4.97965 4.98563 4.99612 5.04155 5.15567 5.18657 5.24395 5.40963 5.46245 5.83162 5.90992 5.92270 5.95156 6.09703 6.27404 6.66568 7.01247 7.45675 7.83004 8.67694 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.008896 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.313454 B = 3146.865479 C = 4467.126965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 H 0.095 0.905 4 O -0.391 6.391 5 C 0.053 3.947 6 C -0.143 4.143 7 C -0.130 4.130 8 H 0.113 0.887 9 C 0.499 3.501 10 O -0.585 6.585 11 N -0.396 5.396 12 C -0.376 4.376 13 H 0.104 0.896 14 C 0.016 3.984 15 N -0.876 5.876 16 Si 0.982 3.018 17 H -0.288 1.288 18 H -0.262 1.262 19 H -0.257 1.257 20 C 0.162 3.838 21 C -0.217 4.217 22 C -0.124 4.124 23 C -0.167 4.167 24 C -0.126 4.126 25 C -0.109 4.109 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.272 0.728 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 2.307 5.015 5.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.112 0.888 4 O -0.311 6.311 5 C -0.023 4.023 6 C -0.181 4.181 7 C -0.152 4.152 8 H 0.131 0.869 9 C 0.293 3.707 10 O -0.471 6.471 11 N -0.104 5.104 12 C -0.503 4.503 13 H 0.121 0.879 14 C -0.191 4.191 15 N -0.508 5.508 16 Si 0.805 3.195 17 H -0.213 1.213 18 H -0.187 1.187 19 H -0.181 1.181 20 C 0.065 3.935 21 C -0.237 4.237 22 C -0.142 4.142 23 C -0.186 4.186 24 C -0.145 4.145 25 C -0.130 4.130 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.825 1.748 5.199 5.781 hybrid contribution 0.366 0.546 -1.118 1.297 sum 2.191 2.294 4.082 5.169 Atomic orbital electron populations 1.21993 0.94763 1.02058 1.02369 1.22496 0.94601 0.95792 0.82920 0.88751 1.88820 1.41077 1.68128 1.33027 1.23703 0.87228 0.97170 0.94166 1.23145 0.99743 0.97800 0.97372 1.22641 0.95968 0.99477 0.97065 0.86852 1.20965 0.84369 0.83645 0.81755 1.90190 1.62436 1.23207 1.71268 1.41290 1.22735 1.20176 1.26151 1.19594 1.40809 0.93420 0.96453 0.87877 1.26400 0.95422 1.01090 0.96152 1.70128 1.43598 1.34591 1.02525 0.85149 0.79452 0.77763 0.77137 1.21314 1.18683 1.18127 1.18500 0.87449 0.93107 0.94409 1.22653 1.00069 0.96338 1.04591 1.21180 0.96135 0.99991 0.96942 1.21145 1.02071 0.94934 1.00447 1.21091 0.96549 0.96811 1.00013 1.20762 0.95400 1.00173 0.96632 0.93702 0.90270 0.92269 0.89685 0.87068 0.91326 0.88686 0.91794 0.82882 0.85192 0.84384 0.85143 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 8.41 71.98 0.61 -5.04 16 2 C 0.10 3.38 4.05 30.96 0.13 3.50 16 3 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 4 O -0.39 -12.77 11.19 -148.98 -1.67 -14.44 16 5 C 0.05 1.38 7.72 72.66 0.56 1.94 16 6 C -0.14 -4.57 6.65 31.89 0.21 -4.36 16 7 C -0.13 -4.89 2.84 -10.55 -0.03 -4.92 16 8 H 0.11 4.21 6.89 -2.39 -0.02 4.20 16 9 C 0.50 23.34 4.50 87.66 0.39 23.74 16 10 O -0.59 -29.59 11.47 -3.01 -0.03 -29.62 16 11 N -0.40 -19.65 2.21 -458.90 -1.01 -20.67 16 12 C -0.38 -17.82 6.81 84.02 0.57 -17.25 16 13 H 0.10 4.52 7.68 -2.91 -0.02 4.49 16 14 C 0.02 0.75 4.12 84.91 0.35 1.10 16 15 N -0.88 -45.36 10.87 21.65 0.24 -45.12 16 16 Si 0.98 36.82 29.56 68.60 2.03 38.84 16 17 H -0.29 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 20 C 0.16 8.26 5.70 38.22 0.22 8.48 16 21 C -0.22 -10.67 9.03 22.41 0.20 -10.47 16 22 C -0.12 -5.17 10.04 22.25 0.22 -4.95 16 23 C -0.17 -6.40 10.04 22.30 0.22 -6.17 16 24 C -0.13 -5.18 10.04 22.25 0.22 -4.96 16 25 C -0.11 -5.22 7.53 22.41 0.17 -5.05 16 26 H 0.04 1.84 7.18 -2.39 -0.02 1.83 16 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.06 2.37 6.86 -2.39 -0.02 2.35 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.53 6.92 -2.39 -0.02 2.52 16 32 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.27 13.51 8.32 -92.70 -0.77 12.74 16 34 H 0.15 8.00 4.59 -57.96 -0.27 7.74 16 35 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 37 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.11 5.47 5.90 -2.91 -0.02 5.46 16 Total: -1.00 -60.80 303.32 4.41 -56.39 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: 0.81 Total: 39.03 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 4.05 Total: -24.41 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.78 Total: -65.79 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.70 Total: -44.07 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.84 kcal Total: -60.80 4.41 -56.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092345147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.705 kcal (2) G-P(sol) polarization free energy of solvation -60.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds